Wall clock time and date at job start Tue Mar 31 2020 23:21:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52997 * 109.47482 * 2 1
4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2
6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 3
7 7 O 1.42911 * 109.46954 * 179.97438 * 6 5 4
8 8 C 1.42899 * 113.99857 * 179.97438 * 7 6 5
9 9 C 1.50700 * 109.47140 * 179.97438 * 8 7 6
10 10 O 1.21291 * 119.99595 * 0.02562 * 9 8 7
11 11 N 1.34768 * 120.00478 * 179.97438 * 9 8 7
12 12 C 1.46496 * 120.00443 * 180.02562 * 11 9 8
13 13 H 1.09002 * 112.88499 * 23.65604 * 12 11 9
14 14 C 1.53947 * 113.66345 * 252.18804 * 12 11 9
15 15 C 1.53944 * 87.29861 * 220.79196 * 14 12 11
16 16 H 1.09005 * 113.66630 * 270.26137 * 15 14 12
17 17 N 1.46502 * 113.74940 * 139.21428 * 15 14 12
18 18 C 1.36935 * 120.00008 * 107.77515 * 17 15 14
19 19 H 1.08005 * 120.00213 * 0.02562 * 18 17 15
20 20 C 1.38817 * 119.99882 * 180.02562 * 18 17 15
21 21 N 1.31614 * 120.00139 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99856 * 179.97438 * 20 18 17
23 23 H 1.48504 * 109.47220 * 59.99729 * 22 20 18
24 24 H 1.48496 * 109.46751 * 179.97438 * 22 20 18
25 25 H 1.48501 * 109.47131 * 299.99906 * 22 20 18
26 26 C 1.52908 * 113.66421 * 154.99920 * 12 11 9
27 27 C 1.52907 * 121.13819 * 13.65552 * 26 12 11
28 28 C 1.53948 * 86.78163 * 209.37949 * 27 26 12
29 29 C 1.52910 * 121.13888 * 265.09053 * 26 12 11
30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3
31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3
33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3
34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3
35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1
36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1
37 37 H 1.09001 * 109.47194 * 299.99650 * 4 3 2
38 38 H 1.08992 * 109.47399 * 59.99823 * 4 3 2
39 39 H 1.09001 * 109.47109 * 299.99380 * 5 4 3
40 40 H 1.09002 * 109.47508 * 59.99571 * 5 4 3
41 41 H 1.08992 * 109.47098 * 299.99158 * 6 5 4
42 42 H 1.09001 * 109.47583 * 60.00267 * 6 5 4
43 43 H 1.08995 * 109.47393 * 299.99836 * 8 7 6
44 44 H 1.08996 * 109.47037 * 60.00106 * 8 7 6
45 45 H 0.97001 * 119.99985 * 0.02562 * 11 9 8
46 46 H 1.09004 * 113.58391 * 335.39642 * 14 12 11
47 47 H 1.09000 * 113.58062 * 106.18713 * 14 12 11
48 48 H 0.96999 * 120.00366 * 287.77447 * 17 15 14
49 49 H 0.97001 * 119.99905 * 180.02562 * 21 20 18
50 50 H 1.09003 * 113.65913 * 323.84845 * 27 26 12
51 51 H 1.08996 * 113.66421 * 94.90698 * 27 26 12
52 52 H 1.09004 * 113.57760 * 270.12585 * 28 27 26
53 53 H 1.08999 * 113.58141 * 139.33359 * 28 27 26
54 54 H 1.09003 * 113.66001 * 265.09008 * 29 26 12
55 55 H 1.08991 * 113.66307 * 36.14242 * 29 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5700 1.4423 -0.0006
5 6 4.0801 2.8848 0.0000
6 6 5.6101 2.8847 -0.0013
7 8 6.0865 4.2321 -0.0013
8 6 7.5110 4.3448 -0.0019
9 6 7.8997 5.8008 -0.0025
10 8 7.0412 6.6576 -0.0019
11 7 9.2011 6.1509 -0.0025
12 6 9.5789 7.5663 -0.0025
13 1 8.7996 8.2131 0.4005
14 6 10.1549 8.0521 -1.3450
15 6 11.1889 8.8496 -0.5296
16 1 10.8623 9.8582 -0.2759
17 7 12.5403 8.8134 -1.0940
18 6 13.0606 9.9274 -1.6970
19 1 12.4747 10.8328 -1.7561
20 6 14.3409 9.8929 -2.2322
21 7 15.0551 8.7897 -2.1597
22 14 15.0503 11.4123 -3.0554
23 1 15.1006 12.5279 -2.0764
24 1 16.4227 11.1175 -3.5400
25 1 14.1919 11.7997 -4.2035
26 6 10.9636 7.8319 0.5893
27 6 11.9523 6.6908 0.8310
28 6 12.5116 7.5366 1.9893
29 6 11.1344 8.2210 2.0581
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8932 -0.5139 0.8899
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9563 -0.8900
37 1 3.9337 0.9284 0.8891
38 1 3.9329 0.9286 -0.8908
39 1 3.7164 3.3992 -0.8896
40 1 3.7171 3.3982 0.8904
41 1 5.9741 2.3704 0.8880
42 1 5.9727 2.3716 -0.8920
43 1 7.9142 3.8612 0.8878
44 1 7.9134 3.8614 -0.8921
45 1 9.8877 5.4657 -0.0026
46 1 10.5938 7.2550 -1.9452
47 1 9.4683 8.6805 -1.9122
48 1 13.0667 8.0004 -1.0406
49 1 15.9499 8.7658 -2.5333
50 1 11.4795 5.7636 1.1548
51 1 12.6597 6.5447 0.0147
52 1 13.3173 8.2071 1.6902
53 1 12.7535 6.9534 2.8779
54 1 11.1884 9.2973 2.2221
55 1 10.4317 7.7240 2.7269
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001203659981.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:21:33
Heat of formation + Delta-G solvation = -73.160767 kcal
Electronic energy + Delta-G solvation = -28920.076282 eV
Core-core repulsion = 24957.086107 eV
Total energy + Delta-G solvation = -3962.990175 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.90738 -40.32118 -38.72912 -37.01780 -36.26204 -35.71570 -34.09226 -33.68970
-31.85257 -29.85504 -28.25623 -26.78517 -26.18958 -25.48851 -24.63981 -23.68624
-22.17190 -21.85299 -21.79475 -21.45083 -19.64144 -18.85751 -18.15414 -17.79143
-17.53100 -17.03474 -16.65809 -16.38413 -16.30194 -16.10777 -15.71107 -15.59996
-14.91450 -14.76968 -14.68840 -14.35840 -14.02791 -13.89712 -13.72411 -13.55636
-13.36436 -13.17674 -13.09947 -12.87367 -12.78071 -12.70721 -12.46509 -12.33934
-12.25721 -12.18876 -12.06553 -11.85502 -11.77394 -11.69364 -11.46599 -11.35078
-11.34478 -11.21778 -10.98525 -10.76308 -10.69401 -10.64493 -9.89014 -8.94516
-7.93500 -5.20157 1.48196 1.49718 1.55740 1.58177 1.84067 2.57114
2.97431 3.37420 3.49790 3.62014 3.72487 3.79738 3.94213 3.95951
3.96876 4.02641 4.11503 4.13312 4.19114 4.21767 4.28937 4.32499
4.39413 4.48017 4.54203 4.56397 4.63374 4.66778 4.74886 4.79516
4.81801 4.86701 4.88605 4.93064 5.02960 5.08358 5.09635 5.10111
5.14720 5.21792 5.22119 5.24986 5.34532 5.37595 5.47738 5.50549
5.52056 5.52871 5.64345 5.70628 6.12851 6.28930 6.60301 7.25487
7.36722 8.12358 8.37772 9.29066
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.024568 B = 0.001559 C = 0.001520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1139.416228 B =17959.597849 C =18414.858644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.124 4.124
3 C -0.121 4.121
4 C -0.109 4.109
5 C -0.118 4.118
6 C 0.056 3.944
7 O -0.400 6.400
8 C 0.047 3.953
9 C 0.508 3.492
10 O -0.577 6.577
11 N -0.698 5.698
12 C 0.151 3.849
13 H 0.101 0.899
14 C -0.169 4.169
15 C 0.173 3.827
16 H 0.073 0.927
17 N -0.714 5.714
18 C -0.246 4.246
19 H 0.072 0.928
20 C -0.068 4.068
21 N -0.965 5.965
22 Si 0.966 3.034
23 H -0.280 1.280
24 H -0.295 1.295
25 H -0.282 1.282
26 C -0.111 4.111
27 C -0.109 4.109
28 C -0.130 4.130
29 C -0.117 4.117
30 H 0.051 0.949
31 H 0.058 0.942
32 H 0.052 0.948
33 H 0.063 0.937
34 H 0.065 0.935
35 H 0.059 0.941
36 H 0.057 0.943
37 H 0.073 0.927
38 H 0.070 0.930
39 H 0.058 0.942
40 H 0.061 0.939
41 H 0.068 0.932
42 H 0.064 0.936
43 H 0.113 0.887
44 H 0.105 0.895
45 H 0.414 0.586
46 H 0.073 0.927
47 H 0.052 0.948
48 H 0.379 0.621
49 H 0.251 0.749
50 H 0.109 0.891
51 H 0.053 0.947
52 H 0.054 0.946
53 H 0.083 0.917
54 H 0.058 0.942
55 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.859 -20.073 8.832 30.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.162 4.162
3 C -0.158 4.158
4 C -0.147 4.147
5 C -0.156 4.156
6 C -0.020 4.020
7 O -0.320 6.320
8 C -0.032 4.032
9 C 0.295 3.705
10 O -0.456 6.456
11 N -0.350 5.350
12 C 0.045 3.955
13 H 0.119 0.881
14 C -0.212 4.212
15 C 0.062 3.938
16 H 0.091 0.909
17 N -0.353 5.353
18 C -0.378 4.378
19 H 0.090 0.910
20 C -0.260 4.260
21 N -0.615 5.615
22 Si 0.796 3.204
23 H -0.206 1.206
24 H -0.221 1.221
25 H -0.208 1.208
26 C -0.113 4.113
27 C -0.146 4.146
28 C -0.168 4.168
29 C -0.155 4.155
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.072 0.928
33 H 0.082 0.918
34 H 0.083 0.917
35 H 0.078 0.922
36 H 0.076 0.924
37 H 0.091 0.909
38 H 0.089 0.911
39 H 0.077 0.923
40 H 0.080 0.920
41 H 0.086 0.914
42 H 0.082 0.918
43 H 0.130 0.870
44 H 0.123 0.877
45 H 0.252 0.748
46 H 0.092 0.908
47 H 0.071 0.929
48 H 0.214 0.786
49 H 0.059 0.941
50 H 0.127 0.873
51 H 0.071 0.929
52 H 0.072 0.928
53 H 0.102 0.898
54 H 0.077 0.923
55 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -21.551 -19.133 8.761 30.121
hybrid contribution 1.297 0.480 -0.861 1.629
sum -20.254 -18.653 7.900 28.645
Atomic orbital electron populations
1.21796 0.95875 1.01869 1.01745 1.21527 0.95940 0.96401 1.02286
1.21609 0.95068 0.97207 1.01962 1.21466 0.95621 0.94610 1.02999
1.21524 0.93333 0.98235 1.02529 1.22786 0.95399 0.82045 1.01741
1.87972 1.19709 1.28498 1.95790 1.22313 0.83411 0.92157 1.05298
1.20982 0.82479 0.91781 0.75222 1.90701 1.50775 1.53552 1.50591
1.45698 1.06800 1.08346 1.74172 1.21884 0.95050 0.82202 0.96381
0.88069 1.24124 0.99201 1.00626 0.97207 1.21304 0.84909 0.95746
0.91809 0.90877 1.42397 1.13034 1.12721 1.67126 1.19629 0.97467
0.92410 1.28271 0.91025 1.25425 0.97637 0.99840 1.03145 1.69778
1.11269 1.27932 1.52507 0.85319 0.77009 0.79556 0.78512 1.20606
1.22149 1.20812 1.23384 0.93862 0.98532 0.95571 1.22472 0.97051
0.96684 0.98402 1.22641 0.96557 0.98928 0.98638 1.22712 0.97394
1.00533 0.94840 0.92946 0.92314 0.92838 0.91802 0.91667 0.92216
0.92394 0.90881 0.91096 0.92335 0.92048 0.91363 0.91766 0.86983
0.87714 0.74813 0.90845 0.92903 0.78607 0.94062 0.87261 0.92853
0.92750 0.89837 0.92304 0.88418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.36 9.91 71.98 0.71 -0.65 16
2 C -0.12 -1.09 5.93 30.59 0.18 -0.91 16
3 C -0.12 -1.25 5.21 30.59 0.16 -1.09 16
4 C -0.11 -1.08 5.21 30.59 0.16 -0.92 16
5 C -0.12 -1.72 5.58 30.59 0.17 -1.54 16
6 C 0.06 0.81 5.94 71.98 0.43 1.24 16
7 O -0.40 -9.18 9.88 -129.94 -1.28 -10.46 16
8 C 0.05 0.83 6.42 71.24 0.46 1.29 16
9 C 0.51 13.43 7.91 87.66 0.69 14.12 16
10 O -0.58 -21.43 16.10 15.98 0.26 -21.18 16
11 N -0.70 -16.38 5.25 -441.17 -2.32 -18.70 16
12 C 0.15 4.44 4.12 45.28 0.19 4.62 16
13 H 0.10 3.26 7.46 -2.39 -0.02 3.24 16
14 C -0.17 -5.98 7.68 31.23 0.24 -5.74 16
15 C 0.17 6.74 4.36 45.28 0.20 6.93 16
16 H 0.07 2.93 8.10 -2.38 -0.02 2.91 16
17 N -0.71 -34.62 5.33 -321.54 -1.71 -36.33 16
18 C -0.25 -13.45 9.97 84.03 0.84 -12.61 16
19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16
20 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16
21 N -0.96 -57.43 13.06 21.65 0.28 -57.15 16
22 Si 0.97 45.83 29.55 68.60 2.03 47.86 16
23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16
25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
26 C -0.11 -3.34 1.06 -52.31 -0.06 -3.40 16
27 C -0.11 -2.96 6.78 30.88 0.21 -2.76 16
28 C -0.13 -3.69 8.08 31.23 0.25 -3.44 16
29 C -0.12 -3.16 7.84 30.88 0.24 -2.92 16
30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16
44 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16
45 H 0.41 7.27 7.03 -92.71 -0.65 6.62 16
46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16
47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
48 H 0.38 19.34 5.92 -92.71 -0.55 18.79 16
49 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
50 H 0.11 2.13 7.03 -2.39 -0.02 2.12 16
51 H 0.05 1.78 6.42 -2.39 -0.02 1.76 16
52 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
53 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
54 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
55 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
Total: -1.00 -71.44 437.09 2.44 -68.99
By element:
Atomic # 1 Polarization: 38.45 SS G_CDS: -0.35 Total: 38.10 kcal
Atomic # 6 Polarization: -16.68 SS G_CDS: 5.54 Total: -11.14 kcal
Atomic # 7 Polarization: -108.43 SS G_CDS: -3.75 Total: -112.17 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: -1.03 Total: -31.64 kcal
Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal
Total: -71.44 2.44 -68.99 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001203659981.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal
(2) G-P(sol) polarization free energy of solvation -71.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.605 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds