Wall clock time and date at job start Tue Mar 31 2020 23:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.42902 * 114.00186 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47205 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99971 * 180.02562 * 9 8 7 12 12 C 1.47153 * 121.21729 * 359.71142 * 11 9 8 13 13 C 1.53298 * 107.73517 * 122.71442 * 12 11 9 14 14 C 1.53096 * 110.51266 * 57.54947 * 13 12 11 15 15 H 1.08995 * 113.06321 * 70.88833 * 14 13 12 16 16 C 1.56028 * 106.38769 * 195.32008 * 14 13 12 17 17 C 1.54501 * 102.61056 * 78.36408 * 16 14 13 18 18 N 1.46657 * 107.02760 * 22.26828 * 17 16 14 19 19 C 1.36939 * 125.63924 * 182.08897 * 18 17 16 20 20 H 1.07994 * 119.99855 * 180.55677 * 19 18 17 21 21 C 1.38809 * 119.99727 * 0.56647 * 19 18 17 22 22 N 1.31622 * 120.00490 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99777 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47267 * 60.00030 * 23 21 19 25 25 H 1.48502 * 109.47193 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47089 * 299.99339 * 23 21 19 27 27 C 1.46464 * 108.29817 * 2.57175 * 18 17 16 28 28 H 1.08994 * 108.42641 * 88.74821 * 27 18 17 29 29 C 1.46761 * 121.21745 * 180.02562 * 11 9 8 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 32 32 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 35 35 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 36 36 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 37 37 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 39 39 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 40 40 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 41 41 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 42 42 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 43 43 H 1.09001 * 109.46918 * 299.99649 * 8 7 6 44 44 H 1.09000 * 109.47330 * 59.99777 * 8 7 6 45 45 H 1.08998 * 109.76473 * 242.35781 * 12 11 9 46 46 H 1.09001 * 109.75768 * 3.11877 * 12 11 9 47 47 H 1.09001 * 109.38354 * 297.22343 * 13 12 11 48 48 H 1.09005 * 109.19410 * 177.75357 * 13 12 11 49 49 H 1.08994 * 110.77886 * 196.64706 * 16 14 13 50 50 H 1.09007 * 110.78080 * 319.89866 * 16 14 13 51 51 H 1.09001 * 109.90332 * 142.23488 * 17 16 14 52 52 H 1.09000 * 109.90696 * 263.29454 * 17 16 14 53 53 H 0.96992 * 120.00324 * 180.02562 * 22 21 19 54 54 H 1.08997 * 109.23037 * 352.82663 * 29 11 9 55 55 H 1.09004 * 109.22854 * 112.23560 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 8 6.0864 4.2321 0.0013 8 6 7.5109 4.3449 0.0019 9 6 7.8995 5.8009 0.0012 10 8 7.0411 6.6577 0.0008 11 7 9.2010 6.1510 0.0010 12 6 10.2644 5.1339 0.0079 13 6 11.1490 5.3748 -1.2207 14 6 11.7196 6.7953 -1.2007 15 1 12.4767 6.9405 -0.4302 16 6 12.2569 7.0742 -2.6388 17 6 10.9657 7.3921 -3.4255 18 7 9.9600 7.8174 -2.4465 19 6 8.6623 8.1508 -2.7293 20 1 7.9994 8.4614 -1.9353 21 6 8.1989 8.0894 -4.0363 22 7 9.0070 7.7112 -5.0040 23 14 6.4285 8.5436 -4.4219 24 1 6.1794 9.9509 -4.0188 25 1 6.1859 8.3965 -5.8796 26 1 5.5128 7.6449 -3.6741 27 6 10.5857 7.8344 -1.1224 28 1 11.0294 8.8172 -0.9636 29 6 9.6095 7.5606 0.0009 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9562 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 3.7171 3.3990 -0.8887 40 1 3.7163 3.3985 0.8912 41 1 5.9733 2.3707 0.8911 42 1 5.9734 2.3713 -0.8889 43 1 7.9133 3.8616 0.8922 44 1 7.9141 3.8612 -0.8878 45 1 10.8585 5.2279 0.9169 46 1 9.8227 4.1387 -0.0432 47 1 10.5565 5.2381 -2.1254 48 1 11.9698 4.6576 -1.2176 49 1 12.9314 7.9303 -2.6403 50 1 12.7529 6.1922 -3.0441 51 1 11.1565 8.1877 -4.1458 52 1 10.6173 6.4986 -3.9436 53 1 8.6833 7.6686 -5.9173 54 1 8.7287 8.1897 -0.1275 55 1 10.0836 7.7971 0.9536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224000743.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:01 Heat of formation + Delta-G solvation = -94.030847 kcal Electronic energy + Delta-G solvation = -30837.152625 eV Core-core repulsion = 26873.257455 eV Total energy + Delta-G solvation = -3963.895169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.40668 -39.86372 -38.69295 -37.05002 -36.53601 -34.65694 -33.76979 -32.84681 -31.30526 -30.04664 -29.59917 -28.10759 -26.49288 -25.16857 -24.58739 -23.86866 -22.19909 -21.88114 -21.72901 -21.17920 -19.68858 -18.50391 -18.29325 -17.55539 -17.48250 -16.91090 -16.69251 -16.46319 -16.06656 -15.85985 -15.64421 -15.34274 -15.00883 -14.85203 -14.46440 -14.26369 -14.09194 -14.04428 -13.77104 -13.68987 -13.43475 -13.19026 -13.09105 -12.95874 -12.79874 -12.66583 -12.54592 -12.48963 -12.31783 -12.23576 -12.07519 -11.80797 -11.73049 -11.67886 -11.49124 -11.38654 -11.38119 -11.25653 -11.12239 -10.68990 -10.67133 -10.61142 -9.48628 -8.80707 -7.84915 -5.14688 1.32910 1.36529 1.44891 1.64929 1.90106 2.46480 2.87203 3.33036 3.50298 3.69125 3.88546 3.92288 3.92402 3.95080 4.06397 4.11069 4.14006 4.16054 4.26956 4.31280 4.35271 4.43247 4.48696 4.51150 4.52848 4.59439 4.63010 4.69129 4.75409 4.78270 4.84655 4.87582 4.90221 4.92669 5.03926 5.05264 5.06795 5.16418 5.18410 5.18789 5.21627 5.33817 5.34740 5.44671 5.49920 5.53694 5.67740 5.70202 5.74882 5.84254 6.13864 6.24257 6.57256 7.16311 7.31574 7.84791 8.45118 9.24510 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002769 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.564767 B =10108.849950 C =11584.225377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.120 4.120 6 C 0.056 3.944 7 O -0.405 6.405 8 C 0.056 3.944 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.595 5.595 12 C 0.106 3.894 13 C -0.120 4.120 14 C -0.083 4.083 15 H 0.125 0.875 16 C -0.130 4.130 17 C 0.186 3.814 18 N -0.604 5.604 19 C -0.203 4.203 20 H 0.062 0.938 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.298 1.298 27 C 0.141 3.859 28 H 0.027 0.973 29 C 0.119 3.881 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.032 0.968 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.082 0.918 51 H -0.006 1.006 52 H 0.009 0.991 53 H 0.243 0.757 54 H 0.047 0.953 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -18.188 15.164 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.144 4.144 5 C -0.157 4.157 6 C -0.020 4.020 7 O -0.324 6.324 8 C -0.023 4.023 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.328 5.328 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.103 4.103 15 H 0.143 0.857 16 C -0.168 4.168 17 C 0.061 3.939 18 N -0.329 5.329 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.782 3.218 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.225 1.225 27 C 0.034 3.966 28 H 0.044 0.956 29 C -0.005 4.005 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.105 0.895 45 H 0.128 0.872 46 H 0.119 0.881 47 H 0.051 0.949 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.012 0.988 52 H 0.027 0.973 53 H 0.052 0.948 54 H 0.065 0.935 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.055 -17.568 14.975 23.084 hybrid contribution -1.281 0.844 -1.244 1.975 sum -1.336 -16.725 13.731 21.680 Atomic orbital electron populations 1.21799 0.95792 1.01979 1.01698 1.21520 0.96002 0.96075 1.02422 1.21617 0.94985 0.97498 1.01844 1.21457 0.95697 0.94120 1.03152 1.21541 0.93333 0.98631 1.02227 1.22802 0.95487 0.82008 1.01689 1.87992 1.19978 1.28751 1.95708 1.22271 0.83115 0.92651 1.04255 1.20858 0.82478 0.91601 0.75786 1.90668 1.50688 1.53644 1.51142 1.47922 1.05063 1.07854 1.72004 1.22177 0.88581 0.91120 0.99650 1.21891 0.99687 0.96628 0.97628 1.22431 0.96218 0.94383 0.97233 0.85716 1.23042 0.96306 1.01463 0.96034 1.20833 0.86987 0.95771 0.90285 1.44286 1.07418 1.78332 1.02874 1.19017 0.86931 1.35220 0.92084 0.91987 1.25252 1.00450 1.03605 0.96149 1.70134 1.34558 1.55927 0.99211 0.85552 0.81974 0.78009 0.76308 1.20810 1.21167 1.22508 1.21068 0.92850 0.97191 0.85517 0.95591 1.21251 0.98398 0.82267 0.98599 0.92027 0.92728 0.93200 0.91883 0.91243 0.92022 0.92908 0.91326 0.90201 0.93331 0.91752 0.90478 0.92494 0.86298 0.89540 0.87250 0.88116 0.94863 0.87684 0.91549 0.89906 0.98762 0.97286 0.94798 0.93481 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.40 16 3 C -0.12 -1.92 5.21 30.59 0.16 -1.76 16 4 C -0.11 -1.69 5.21 30.59 0.16 -1.53 16 5 C -0.12 -2.69 5.58 30.59 0.17 -2.52 16 6 C 0.06 1.29 5.94 71.98 0.43 1.72 16 7 O -0.40 -13.86 9.88 -129.94 -1.28 -15.15 16 8 C 0.06 1.64 4.78 71.24 0.34 1.98 16 9 C 0.50 19.90 7.79 87.66 0.68 20.58 16 10 O -0.58 -30.07 15.96 15.99 0.26 -29.81 16 11 N -0.59 -19.84 2.96 -822.11 -2.43 -22.27 16 12 C 0.11 2.26 6.39 86.35 0.55 2.81 16 13 C -0.12 -3.06 5.05 30.73 0.16 -2.90 16 14 C -0.08 -2.34 3.68 -9.37 -0.03 -2.37 16 15 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.13 -4.33 6.32 32.15 0.20 -4.13 16 17 C 0.19 9.13 4.59 86.86 0.40 9.53 16 18 N -0.60 -30.89 3.13 -676.00 -2.12 -33.01 16 19 C -0.20 -12.12 9.69 84.03 0.81 -11.31 16 20 H 0.06 3.90 6.53 -2.91 -0.02 3.88 16 21 C -0.06 -3.83 5.49 84.86 0.47 -3.36 16 22 N -0.95 -59.77 10.31 21.65 0.22 -59.54 16 23 Si 0.95 51.97 29.55 68.60 2.03 54.00 16 24 H -0.28 -14.99 7.11 99.48 0.71 -14.28 16 25 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 26 H -0.30 -16.88 7.11 99.48 0.71 -16.17 16 27 C 0.14 5.41 3.00 44.79 0.13 5.55 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 C 0.12 4.34 5.67 85.78 0.49 4.82 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.12 2.25 7.90 -2.39 -0.02 2.23 16 44 H 0.09 2.32 7.80 -2.39 -0.02 2.30 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.65 6.02 -2.39 -0.01 1.63 16 47 H 0.03 1.19 6.84 -2.39 -0.02 1.17 16 48 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.08 2.38 7.98 -2.38 -0.02 2.36 16 51 H -0.01 -0.33 7.59 -2.39 -0.02 -0.35 16 52 H 0.01 0.50 6.96 -2.39 -0.02 0.48 16 53 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 54 H 0.05 2.19 5.57 -2.39 -0.01 2.17 16 55 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -85.45 419.55 3.51 -81.94 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.83 Total: 9.37 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.01 Total: 14.47 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.33 Total: -114.82 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.03 Total: -44.96 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.03 Total: 54.00 kcal Total: -85.45 3.51 -81.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224000743.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.093 kcal (2) G-P(sol) polarization free energy of solvation -85.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds