Wall clock time and date at job start Tue Mar 31 2020 23:05:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46982 * 2 1
4 4 C 1.52997 * 109.47482 * 304.63706 * 3 2 1
5 5 C 1.53001 * 109.47400 * 294.46730 * 4 3 2
6 6 C 1.53000 * 109.47195 * 64.64109 * 3 2 1
7 7 N 1.46501 * 109.47017 * 64.99660 * 6 3 2
8 8 C 1.46510 * 119.99989 * 270.00111 * 7 6 3
9 9 C 1.53000 * 109.46788 * 265.15936 * 8 7 6
10 10 C 1.34775 * 120.00369 * 90.00150 * 7 6 3
11 11 O 1.21348 * 119.99844 * 5.03023 * 10 7 6
12 12 C 1.49453 * 120.00323 * 185.02946 * 10 7 6
13 13 O 1.21348 * 119.99636 * 275.21643 * 12 10 7
14 14 N 1.34769 * 119.99730 * 95.21401 * 12 10 7
15 15 C 1.46926 * 120.63416 * 354.68291 * 14 12 10
16 16 C 1.53199 * 108.77400 * 126.66737 * 15 14 12
17 17 C 1.53041 * 109.31431 * 54.63815 * 16 15 14
18 18 C 1.53041 * 109.53366 * 298.63121 * 17 16 15
19 19 H 1.08994 * 109.50094 * 301.41553 * 18 17 16
20 20 C 1.50698 * 109.52288 * 181.33169 * 18 17 16
21 21 H 1.08006 * 120.00076 * 0.14981 * 20 18 17
22 22 C 1.37876 * 120.00385 * 180.14546 * 20 18 17
23 23 N 1.31514 * 120.00238 * 180.02562 * 22 20 18
24 24 Si 1.86801 * 119.99834 * 0.02562 * 22 20 18
25 25 H 1.48507 * 109.47115 * 89.99724 * 24 22 20
26 26 H 1.48493 * 109.47424 * 209.99685 * 24 22 20
27 27 H 1.48504 * 109.47004 * 330.00443 * 24 22 20
28 28 C 1.46934 * 120.62878 * 174.96266 * 14 12 10
29 29 H 1.09004 * 109.47107 * 305.10699 * 1 2 3
30 30 H 1.09003 * 109.47319 * 65.10440 * 1 2 3
31 31 H 1.08996 * 109.47554 * 185.10859 * 1 2 3
32 32 H 1.09001 * 109.46656 * 240.00215 * 2 1 3
33 33 H 1.08993 * 109.47071 * 120.00929 * 2 1 3
34 34 H 1.09006 * 109.47001 * 184.63892 * 3 2 1
35 35 H 1.08996 * 109.46915 * 54.46843 * 4 3 2
36 36 H 1.09000 * 109.47125 * 174.46713 * 4 3 2
37 37 H 1.09001 * 109.46717 * 305.21164 * 5 4 3
38 38 H 1.09003 * 109.46868 * 65.20544 * 5 4 3
39 39 H 1.08997 * 109.47120 * 185.20515 * 5 4 3
40 40 H 1.08999 * 109.46862 * 304.99929 * 6 3 2
41 41 H 1.08996 * 109.47267 * 184.99191 * 6 3 2
42 42 H 1.08995 * 109.46823 * 25.15965 * 8 7 6
43 43 H 1.08993 * 109.46782 * 145.15886 * 8 7 6
44 44 H 1.09001 * 109.47242 * 60.00455 * 9 8 7
45 45 H 1.09006 * 109.46616 * 179.97438 * 9 8 7
46 46 H 1.08995 * 109.47462 * 299.99638 * 9 8 7
47 47 H 1.08998 * 109.58836 * 246.45176 * 15 14 12
48 48 H 1.09001 * 109.58817 * 6.88146 * 15 14 12
49 49 H 1.08994 * 109.49609 * 294.67945 * 16 15 14
50 50 H 1.09007 * 109.49539 * 174.58997 * 16 15 14
51 51 H 1.08999 * 109.45736 * 178.61761 * 17 16 15
52 52 H 1.09000 * 109.45083 * 58.64706 * 17 16 15
53 53 H 0.96999 * 119.99944 * 180.02562 * 23 22 20
54 54 H 1.09002 * 109.58376 * 353.12141 * 28 14 12
55 55 H 1.08994 * 109.58502 * 113.54489 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4370 2.1967 -1.1868
5 6 1.9600 1.5947 -2.4926
6 6 1.6275 2.1293 1.3035
7 7 2.3003 1.4803 2.4315
8 6 1.6637 0.3498 3.1122
9 6 0.8928 0.8578 4.3323
10 6 3.5048 1.9230 2.8431
11 8 3.9909 2.9148 2.3404
12 6 4.2420 1.1927 3.9186
13 8 4.0037 1.4282 5.0849
14 7 5.1712 0.2724 3.5931
15 6 5.3891 -0.1079 2.1908
16 6 6.8770 0.0513 1.8622
17 6 7.7060 -0.7516 2.8673
18 6 7.4626 -0.2119 4.2785
19 1 7.7323 0.8435 4.3159
20 6 8.3039 -0.9813 5.2640
21 1 8.9502 -1.7747 4.9187
22 6 8.2486 -0.6723 6.6066
23 7 8.9832 -1.3434 7.4666
24 14 7.1304 0.6996 7.2041
25 1 5.7938 0.1415 7.5316
26 1 7.7171 1.3235 8.4171
27 1 6.9912 1.7243 6.1382
28 6 5.9814 -0.3741 4.6345
29 1 -0.3633 0.5910 0.8407
30 1 -0.3634 0.4326 -0.9322
31 1 -0.3634 -1.0235 0.0915
32 1 1.8932 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8898
34 1 3.1268 1.4436 -0.0831
35 1 0.3507 2.1120 -1.1571
36 1 1.7211 3.2475 -1.1317
37 1 3.0499 1.5952 -2.4819
38 1 1.5981 0.5713 -2.5914
39 1 1.6045 2.1887 -3.3345
40 1 0.5478 2.0500 1.4300
41 1 1.9128 3.1805 1.2664
42 1 0.9751 -0.1454 2.4277
43 1 2.4278 -0.3576 3.4339
44 1 0.1285 1.5653 4.0105
45 1 0.4188 0.0168 4.8385
46 1 1.5813 1.3530 5.0168
47 1 5.0914 -1.1460 2.0432
48 1 4.8002 0.5393 1.5409
49 1 7.1522 1.1042 1.9223
50 1 7.0687 -0.3183 0.8548
51 1 8.7638 -0.6599 2.6209
52 1 7.4127 -1.8005 2.8240
53 1 8.9440 -1.1263 8.4112
54 1 5.7832 0.0975 5.5970
55 1 5.7320 -1.4338 4.6862
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001261608492.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:05:48
Heat of formation + Delta-G solvation = -103.981507 kcal
Electronic energy + Delta-G solvation = -32537.905177 eV
Core-core repulsion = 28573.578515 eV
Total energy + Delta-G solvation = -3964.326662 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-42.27772 -40.42403 -38.84415 -38.49447 -36.57492 -35.40469 -33.75881 -32.38429
-32.01866 -31.96626 -29.63981 -27.65366 -26.99782 -25.68391 -25.02401 -24.07743
-23.69993 -23.09775 -21.08193 -20.11394 -19.71117 -19.08808 -18.84981 -18.17218
-17.72887 -16.91777 -16.55636 -16.34658 -16.07232 -15.89643 -15.57981 -15.47622
-15.20037 -14.93490 -14.90761 -14.61081 -14.37721 -14.17561 -13.98479 -13.87728
-13.80241 -13.48121 -13.23662 -13.16006 -13.01936 -12.80887 -12.72375 -12.61325
-12.39806 -12.30453 -12.19819 -12.05931 -11.99925 -11.88252 -11.66774 -11.50928
-11.31299 -11.24285 -11.22346 -11.11423 -10.85347 -10.66046 -9.91674 -9.83644
-8.41582 -6.42850 0.85491 0.99366 1.18862 1.25549 1.34963 1.38231
2.16384 2.21256 2.94554 2.99618 3.75898 3.81218 3.86275 3.90215
3.99004 4.01734 4.02575 4.18238 4.28338 4.33512 4.38481 4.39489
4.44593 4.50903 4.56524 4.59032 4.61436 4.68431 4.71595 4.75184
4.80296 4.83306 4.87821 4.93762 4.98543 5.00187 5.10216 5.13800
5.16236 5.21123 5.25654 5.34552 5.35745 5.40138 5.41800 5.47209
5.48713 5.57238 5.62315 5.69342 5.90127 6.06540 6.23005 6.59141
6.62621 6.68346 7.22685 8.74414
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.016548 B = 0.003621 C = 0.003285
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.659578 B = 7730.488460 C = 8520.889329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.123 4.123
3 C -0.099 4.099
4 C -0.116 4.116
5 C -0.150 4.150
6 C 0.111 3.889
7 N -0.579 5.579
8 C 0.094 3.906
9 C -0.175 4.175
10 C 0.526 3.474
11 O -0.545 6.545
12 C 0.499 3.501
13 O -0.561 6.561
14 N -0.587 5.587
15 C 0.105 3.895
16 C -0.129 4.129
17 C -0.095 4.095
18 C 0.001 3.999
19 H 0.007 0.993
20 C -0.507 4.507
21 H 0.057 0.943
22 C 0.035 3.965
23 N -0.933 5.933
24 Si 0.927 3.073
25 H -0.272 1.272
26 H -0.292 1.292
27 H -0.278 1.278
28 C 0.109 3.891
29 H 0.060 0.940
30 H 0.065 0.935
31 H 0.060 0.940
32 H 0.070 0.930
33 H 0.061 0.939
34 H 0.054 0.946
35 H 0.083 0.917
36 H 0.054 0.946
37 H 0.044 0.956
38 H 0.063 0.937
39 H 0.058 0.942
40 H 0.113 0.887
41 H 0.069 0.931
42 H 0.131 0.869
43 H 0.066 0.934
44 H 0.074 0.926
45 H 0.086 0.914
46 H 0.031 0.969
47 H 0.108 0.892
48 H 0.086 0.914
49 H 0.047 0.953
50 H 0.112 0.888
51 H 0.059 0.941
52 H 0.072 0.928
53 H 0.268 0.732
54 H 0.049 0.951
55 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.401 1.049 -21.321 30.943
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.160 4.160
3 C -0.118 4.118
4 C -0.154 4.154
5 C -0.207 4.207
6 C -0.010 4.010
7 N -0.312 5.312
8 C -0.028 4.028
9 C -0.233 4.233
10 C 0.308 3.692
11 O -0.422 6.422
12 C 0.282 3.718
13 O -0.439 6.439
14 N -0.320 5.320
15 C -0.016 4.016
16 C -0.167 4.167
17 C -0.132 4.132
18 C -0.019 4.019
19 H 0.025 0.975
20 C -0.546 4.546
21 H 0.076 0.924
22 C -0.165 4.165
23 N -0.573 5.573
24 Si 0.757 3.243
25 H -0.199 1.199
26 H -0.220 1.220
27 H -0.204 1.204
28 C -0.013 4.013
29 H 0.079 0.921
30 H 0.084 0.916
31 H 0.079 0.921
32 H 0.089 0.911
33 H 0.080 0.920
34 H 0.073 0.927
35 H 0.102 0.898
36 H 0.072 0.928
37 H 0.063 0.937
38 H 0.082 0.918
39 H 0.077 0.923
40 H 0.131 0.869
41 H 0.087 0.913
42 H 0.149 0.851
43 H 0.084 0.916
44 H 0.093 0.907
45 H 0.105 0.895
46 H 0.050 0.950
47 H 0.126 0.874
48 H 0.104 0.896
49 H 0.066 0.934
50 H 0.130 0.870
51 H 0.078 0.922
52 H 0.090 0.910
53 H 0.077 0.923
54 H 0.067 0.933
55 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -22.235 1.661 -20.802 30.494
hybrid contribution 0.287 0.940 1.404 1.714
sum -21.948 2.600 -19.398 29.407
Atomic orbital electron populations
1.21928 0.94690 1.02247 1.02539 1.21649 0.97059 0.94861 1.02471
1.21541 1.00051 0.96537 0.93701 1.21530 1.01522 0.98818 0.93491
1.21763 1.00701 1.01445 0.96804 1.21950 0.98283 0.96945 0.83813
1.48073 1.16998 1.33611 1.32484 1.22057 0.98101 0.87103 0.95517
1.22248 1.00539 1.02890 0.97588 1.20004 0.83113 0.84709 0.81393
1.90763 1.68904 1.26271 1.56278 1.20770 0.81525 0.80062 0.89469
1.90752 1.67276 1.65426 1.20483 1.48511 1.35091 1.38116 1.10253
1.22108 0.98052 1.02666 0.78732 1.21944 0.93589 1.00350 1.00772
1.21369 0.99762 0.99630 0.92469 1.19460 0.90535 0.95934 0.95924
0.97465 1.21248 1.23873 1.18254 0.91194 0.92434 1.25532 0.96239
0.97198 0.97492 1.69962 1.41766 1.42336 1.03252 0.86241 0.79220
0.81281 0.77599 1.19869 1.21961 1.20373 1.22331 0.92098 0.97276
0.89557 0.92147 0.91633 0.92129 0.91126 0.92011 0.92728 0.89824
0.92753 0.93666 0.91764 0.92311 0.86922 0.91276 0.85145 0.91560
0.90688 0.89483 0.94955 0.87429 0.89605 0.93410 0.87003 0.92223
0.90974 0.92257 0.93277 0.89640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.06 8.52 71.98 0.61 -0.44 16
2 C -0.12 -1.22 4.84 30.59 0.15 -1.07 16
3 C -0.10 -1.33 2.36 -10.80 -0.03 -1.36 16
4 C -0.12 -1.25 5.09 30.59 0.16 -1.10 16
5 C -0.15 -1.54 9.55 71.98 0.69 -0.85 16
6 C 0.11 1.82 4.78 86.38 0.41 2.23 16
7 N -0.58 -12.80 2.30 -823.39 -1.90 -14.69 16
8 C 0.09 1.67 4.83 86.38 0.42 2.09 16
9 C -0.17 -3.40 10.21 71.98 0.73 -2.66 16
10 C 0.53 17.13 5.42 87.27 0.47 17.60 16
11 O -0.54 -20.77 16.65 -3.24 -0.05 -20.83 16
12 C 0.50 19.44 5.68 87.27 0.50 19.94 16
13 O -0.56 -26.17 15.31 -3.24 -0.05 -26.21 16
14 N -0.59 -21.49 2.97 -820.46 -2.44 -23.93 16
15 C 0.11 2.79 6.36 86.36 0.55 3.34 16
16 C -0.13 -3.58 6.08 30.67 0.19 -3.39 16
17 C -0.09 -3.36 5.11 30.62 0.16 -3.20 16
18 C 0.00 0.05 1.84 -11.46 -0.02 0.03 16
19 H 0.01 0.37 7.21 -2.39 -0.02 0.35 16
20 C -0.51 -28.27 9.15 25.60 0.23 -28.04 16
21 H 0.06 3.41 7.99 -2.91 -0.02 3.39 16
22 C 0.03 2.04 5.45 84.65 0.46 2.50 16
23 N -0.93 -58.03 13.96 21.45 0.30 -57.73 16
24 Si 0.93 49.85 24.32 68.60 1.67 51.52 16
25 H -0.27 -14.51 6.92 99.48 0.69 -13.83 16
26 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16
27 H -0.28 -15.40 6.53 99.48 0.65 -14.75 16
28 C 0.11 4.77 5.09 86.36 0.44 5.21 16
29 H 0.06 0.36 5.78 -2.38 -0.01 0.35 16
30 H 0.06 0.39 6.53 -2.39 -0.02 0.37 16
31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16
32 H 0.07 0.67 6.93 -2.39 -0.02 0.65 16
33 H 0.06 0.68 5.58 -2.39 -0.01 0.67 16
34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16
35 H 0.08 0.65 6.15 -2.39 -0.01 0.64 16
36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16
38 H 0.06 0.56 6.95 -2.39 -0.02 0.54 16
39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
40 H 0.11 1.20 6.16 -2.39 -0.01 1.19 16
41 H 0.07 1.43 7.36 -2.39 -0.02 1.41 16
42 H 0.13 1.36 5.16 -2.39 -0.01 1.35 16
43 H 0.07 1.39 6.97 -2.39 -0.02 1.38 16
44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
45 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16
46 H 0.03 0.91 6.88 -2.39 -0.02 0.89 16
47 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16
48 H 0.09 2.07 6.32 -2.39 -0.02 2.05 16
49 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
50 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16
51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
52 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
53 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16
54 H 0.05 2.49 2.35 -2.39 -0.01 2.48 16
55 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16
Total: -1.00 -76.71 404.91 4.44 -72.27
By element:
Atomic # 1 Polarization: 7.98 SS G_CDS: 0.79 Total: 8.77 kcal
Atomic # 6 Polarization: 4.71 SS G_CDS: 6.12 Total: 10.83 kcal
Atomic # 7 Polarization: -92.31 SS G_CDS: -4.04 Total: -96.35 kcal
Atomic # 8 Polarization: -46.94 SS G_CDS: -0.10 Total: -47.04 kcal
Atomic # 14 Polarization: 49.85 SS G_CDS: 1.67 Total: 51.52 kcal
Total: -76.71 4.44 -72.27 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261608492.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.711 kcal
(2) G-P(sol) polarization free energy of solvation -76.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds