Wall clock time and date at job start Tue Mar 31 2020 22:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46819 * 2 1 4 4 C 1.52993 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47165 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47214 * 305.00210 * 6 5 4 8 8 C 1.53000 * 109.47056 * 64.99863 * 6 5 4 9 9 C 1.53004 * 109.47241 * 185.51453 * 8 6 5 10 10 C 1.50690 * 109.47333 * 184.99963 * 6 5 4 11 11 O 1.21287 * 120.00103 * 275.16236 * 10 6 5 12 12 N 1.34776 * 120.00272 * 95.16029 * 10 6 5 13 13 C 1.46503 * 120.00257 * 175.13622 * 12 10 6 14 14 H 1.09002 * 110.96703 * 322.29886 * 13 12 10 15 15 C 1.55008 * 111.11036 * 86.44659 * 13 12 10 16 16 O 1.43911 * 105.17908 * 81.95952 * 15 13 12 17 17 C 1.42400 * 109.55569 * 24.29624 * 16 15 13 18 18 C 1.52699 * 116.14141 * 129.84689 * 17 16 15 19 19 N 1.47208 * 87.79766 * 90.69950 * 18 17 16 20 20 C 1.36939 * 135.97548 * 206.45672 * 19 18 17 21 21 H 1.08007 * 119.99454 * 6.50469 * 20 19 18 22 22 C 1.38805 * 120.00453 * 186.50986 * 20 19 18 23 23 N 1.31622 * 119.99647 * 6.29007 * 22 20 19 24 24 Si 1.86798 * 120.00372 * 186.29362 * 22 20 19 25 25 H 1.48497 * 109.47573 * 84.98680 * 24 22 20 26 26 H 1.48499 * 109.47228 * 204.99138 * 24 22 20 27 27 H 1.48503 * 109.46898 * 324.98941 * 24 22 20 28 28 C 1.47203 * 88.05509 * 26.70956 * 19 18 17 29 29 C 1.53658 * 108.53281 * 358.08318 * 17 16 15 30 30 H 1.09004 * 109.47363 * 299.99696 * 1 2 3 31 31 H 1.08999 * 109.47240 * 60.00486 * 1 2 3 32 32 H 1.09000 * 109.46673 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47108 * 239.99962 * 2 1 3 34 34 H 1.08999 * 109.47240 * 119.99514 * 2 1 3 35 35 H 1.09003 * 109.46909 * 59.99474 * 3 2 1 36 36 H 1.08999 * 109.46818 * 299.99772 * 3 2 1 37 37 H 1.08996 * 109.47722 * 59.99534 * 4 3 2 38 38 H 1.09007 * 109.47248 * 299.99334 * 4 3 2 39 39 H 1.08998 * 109.47312 * 59.99834 * 5 4 3 40 40 H 1.08999 * 109.46818 * 299.99520 * 5 4 3 41 41 H 1.09000 * 109.47471 * 305.51535 * 8 6 5 42 42 H 1.09003 * 109.47269 * 65.51176 * 8 6 5 43 43 H 1.09000 * 109.46861 * 184.37037 * 9 8 6 44 44 H 1.08989 * 109.47148 * 304.37249 * 9 8 6 45 45 H 1.08998 * 109.46761 * 64.37307 * 9 8 6 46 46 H 0.97005 * 119.99868 * 355.12575 * 12 10 6 47 47 H 1.08997 * 110.30382 * 323.03674 * 15 13 12 48 48 H 1.09003 * 110.38569 * 200.92628 * 15 13 12 49 49 H 1.09007 * 113.49945 * 335.96872 * 18 17 16 50 50 H 1.09000 * 113.49872 * 205.43241 * 18 17 16 51 51 H 0.97004 * 119.99835 * 180.02562 * 23 22 20 52 52 H 1.09006 * 113.50016 * 88.01879 * 28 19 18 53 53 H 1.08991 * 113.50524 * 218.55815 * 28 19 18 54 54 H 1.08994 * 110.92892 * 97.30640 * 29 17 16 55 55 H 1.09002 * 110.92669 * 220.96619 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 5.6098 2.8853 -0.0013 7 1 5.9732 2.2962 0.8408 8 6 6.1198 2.2751 -1.3084 9 6 7.6436 2.1486 -1.2518 10 6 6.1121 4.3007 0.1219 11 8 6.2251 4.9924 -0.8680 12 7 6.4357 4.7980 1.3320 13 6 7.0239 6.1354 1.4410 14 1 7.7133 6.3264 0.6185 15 6 5.9237 7.2251 1.5118 16 8 5.5039 7.2477 2.8881 17 6 6.5516 6.7503 3.7143 18 6 6.9284 7.6139 4.9159 19 7 5.9389 6.8559 5.6991 20 6 5.1659 7.0944 6.8040 21 1 5.1397 8.0814 7.2418 22 6 4.4162 6.0677 7.3613 23 7 4.5421 4.8391 6.9063 24 14 3.2284 6.4297 8.7569 25 1 1.9298 6.8826 8.1969 26 1 3.0187 5.1986 9.5603 27 1 3.7927 7.4959 9.6230 28 6 6.1492 5.7269 4.7782 29 6 7.7246 6.3295 2.8153 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9287 0.8892 39 1 3.7168 3.3993 0.8886 40 1 3.7161 3.3987 -0.8913 41 1 5.6782 1.2880 -1.4452 42 1 5.8393 2.9175 -2.1431 43 1 8.0139 1.7867 -2.2109 44 1 8.0814 3.1235 -1.0376 45 1 7.9208 1.4454 -0.4665 46 1 6.2790 4.2706 2.1309 47 1 5.0869 6.9602 0.8655 48 1 6.3306 8.1946 1.2245 49 1 6.6714 8.6661 4.7927 50 1 7.9546 7.4663 5.2525 51 1 4.0179 4.1217 7.2955 52 1 6.9643 5.0679 5.0774 53 1 5.2343 5.1853 4.5385 54 1 8.4760 7.1172 2.7616 55 1 8.1659 5.3954 3.1629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273728971.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:54 Heat of formation + Delta-G solvation = -76.977303 kcal Electronic energy + Delta-G solvation = -30766.583044 eV Core-core repulsion = 26803.427372 eV Total energy + Delta-G solvation = -3963.155672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.76945 -40.67895 -38.09118 -37.51703 -35.61600 -35.39669 -34.18949 -32.54258 -31.85452 -30.06254 -29.20337 -27.36799 -26.54365 -25.77662 -24.15070 -23.64512 -22.74229 -22.00948 -21.73164 -20.76219 -20.56668 -18.73980 -18.31685 -17.71808 -17.03916 -16.68709 -16.56962 -16.30418 -15.91700 -15.81293 -15.45544 -15.14904 -14.97344 -14.91290 -14.65477 -14.57401 -14.16014 -14.10796 -13.85355 -13.58416 -13.55127 -13.20846 -13.02659 -12.87657 -12.82919 -12.68514 -12.56490 -12.52894 -12.28849 -12.25488 -12.15269 -11.96424 -11.79312 -11.67858 -11.58013 -11.54885 -11.42958 -11.36705 -11.22451 -10.90905 -10.62169 -10.39867 -9.94456 -8.92670 -7.93442 -5.23253 1.43319 1.46772 1.53733 1.61576 2.17936 2.46308 2.79217 3.29090 3.34360 3.59019 3.63336 3.65601 3.73794 3.79140 3.90262 4.03847 4.09149 4.14142 4.26842 4.35299 4.37300 4.38456 4.52797 4.62769 4.65458 4.67196 4.71057 4.74823 4.75388 4.75952 4.84605 4.90058 4.91024 4.91557 4.96742 5.02575 5.05946 5.09622 5.16695 5.17495 5.20543 5.21302 5.26109 5.31837 5.38646 5.39291 5.47907 5.48295 5.53113 5.54198 5.91450 6.32607 6.52485 6.90808 7.22351 7.58825 8.60382 9.25754 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007902 B = 0.003373 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3542.592545 B = 8300.206354 C =11060.807009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.111 4.111 5 C -0.105 4.105 6 C -0.102 4.102 7 H 0.105 0.895 8 C -0.105 4.105 9 C -0.152 4.152 10 C 0.522 3.478 11 O -0.575 6.575 12 N -0.714 5.714 13 C 0.120 3.880 14 H 0.118 0.882 15 C 0.036 3.964 16 O -0.371 6.371 17 C 0.075 3.925 18 C 0.107 3.893 19 N -0.639 5.639 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.064 4.064 23 N -0.950 5.950 24 Si 0.977 3.023 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.268 1.268 28 C 0.162 3.838 29 C -0.128 4.128 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.408 0.592 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.069 0.931 51 H 0.249 0.751 52 H 0.042 0.958 53 H 0.025 0.975 54 H 0.122 0.878 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -9.003 -18.118 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.123 4.123 7 H 0.123 0.877 8 C -0.142 4.142 9 C -0.209 4.209 10 C 0.310 3.690 11 O -0.454 6.454 12 N -0.365 5.365 13 C 0.014 3.986 14 H 0.135 0.865 15 C -0.041 4.041 16 O -0.291 6.291 17 C 0.034 3.966 18 C -0.018 4.018 19 N -0.365 5.365 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.193 1.193 28 C 0.036 3.964 29 C -0.166 4.166 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.243 0.757 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.058 0.942 52 H 0.059 0.941 53 H 0.044 0.956 54 H 0.140 0.860 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.000 -8.487 -18.457 20.705 hybrid contribution -0.880 0.114 1.488 1.732 sum 3.120 -8.372 -16.969 19.178 Atomic orbital electron populations 1.21803 0.96018 1.01904 1.01587 1.21519 0.95841 0.96295 1.02359 1.21631 0.95600 0.97295 1.01559 1.21605 0.95153 0.94893 1.03197 1.21475 0.92218 0.98815 1.01855 1.21452 0.97160 0.91693 1.02043 0.87680 1.21468 0.96342 1.01483 0.94942 1.21787 0.95424 1.01091 1.02620 1.21111 0.75725 0.89945 0.82237 1.90647 1.54828 1.61931 1.38030 1.46105 1.63537 1.17601 1.09256 1.22522 0.94452 0.82394 0.99221 0.86453 1.24004 0.98106 0.99345 0.82690 1.88411 1.38946 1.84667 1.17032 1.23112 0.87421 0.95710 0.90366 1.22936 0.93506 0.96359 0.89007 1.45852 1.44682 1.14494 1.31507 1.19265 1.18376 0.95263 1.03013 0.90278 1.25590 1.02730 0.95063 1.02321 1.69989 1.44315 0.99671 1.45865 0.85126 0.78819 0.76911 0.78676 1.21566 1.21603 1.19333 1.22298 0.97291 0.90889 0.85946 1.23189 0.96892 1.04974 0.91580 0.93528 0.92611 0.92084 0.91068 0.92107 0.93349 0.92060 0.90003 0.91340 0.93048 0.92056 0.88785 0.92347 0.91649 0.94583 0.91565 0.75650 0.91160 0.89591 0.93757 0.91328 0.94213 0.94051 0.95603 0.85970 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -1.84 5.93 30.60 0.18 -1.66 16 3 C -0.12 -2.13 5.21 30.59 0.16 -1.97 16 4 C -0.11 -1.79 4.98 30.59 0.15 -1.64 16 5 C -0.11 -2.14 4.66 30.60 0.14 -2.00 16 6 C -0.10 -2.01 2.18 -11.54 -0.03 -2.04 16 7 H 0.11 1.76 8.13 -2.39 -0.02 1.74 16 8 C -0.10 -1.80 5.04 30.60 0.15 -1.65 16 9 C -0.15 -2.50 9.80 71.98 0.71 -1.80 16 10 C 0.52 13.35 5.80 87.65 0.51 13.86 16 11 O -0.57 -18.09 15.84 -3.05 -0.05 -18.14 16 12 N -0.71 -17.89 5.24 -435.26 -2.28 -20.17 16 13 C 0.12 2.96 3.33 46.53 0.16 3.11 16 14 H 0.12 2.61 7.82 -2.39 -0.02 2.60 16 15 C 0.04 1.07 7.49 72.67 0.54 1.61 16 16 O -0.37 -14.73 11.18 -148.98 -1.67 -16.39 16 17 C 0.07 2.72 1.75 -10.67 -0.02 2.70 16 18 C 0.11 4.35 8.20 83.38 0.68 5.03 16 19 N -0.64 -33.86 3.77 -739.08 -2.79 -36.65 16 20 C -0.23 -13.48 10.73 84.03 0.90 -12.58 16 21 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 22 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.95 -57.74 11.81 21.65 0.26 -57.48 16 24 Si 0.98 46.79 29.56 68.60 2.03 48.82 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 C 0.16 7.50 6.71 83.48 0.56 8.06 16 29 C -0.13 -3.09 5.97 31.67 0.19 -2.90 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.06 6.45 -2.39 -0.02 1.05 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.21 6.32 -2.39 -0.02 1.19 16 42 H 0.06 1.21 7.66 -2.39 -0.02 1.20 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.03 0.73 7.17 -2.39 -0.02 0.71 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.41 10.11 8.62 -92.70 -0.80 9.32 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 51 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 52 H 0.04 1.87 7.95 -2.38 -0.02 1.85 16 53 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 54 H 0.12 2.28 8.13 -2.39 -0.02 2.26 16 55 H 0.10 2.28 7.81 -2.39 -0.02 2.26 16 Total: -1.00 -74.01 431.97 1.72 -72.30 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.04 Total: 26.45 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.17 Total: 1.27 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.81 Total: -114.30 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.71 Total: -34.54 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.01 1.72 -72.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273728971.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.680 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds