Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 C 1.52999 * 109.46838 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47377 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47472 * 183.79558 * 5 4 3 7 7 H 1.09005 * 109.46715 * 56.18331 * 6 5 4 8 8 C 1.53001 * 109.47156 * 296.19096 * 6 5 4 9 9 C 1.53006 * 109.46971 * 294.61324 * 8 6 5 10 10 C 1.50696 * 109.47219 * 176.18470 * 6 5 4 11 11 O 1.21283 * 119.99938 * 21.40429 * 10 6 5 12 12 N 1.34775 * 119.99795 * 201.39756 * 10 6 5 13 13 C 1.47130 * 121.05916 * 4.82778 * 12 10 6 14 14 C 1.53217 * 108.72827 * 127.77027 * 13 12 10 15 15 O 1.43107 * 109.34967 * 54.13019 * 14 13 12 16 16 C 1.42491 * 113.97441 * 300.04301 * 15 14 13 17 17 C 1.53471 * 113.76962 * 286.79397 * 16 15 14 18 18 N 1.47677 * 85.96748 * 268.71625 * 17 16 15 19 19 C 1.36934 * 134.45127 * 155.74285 * 18 17 16 20 20 H 1.08002 * 119.99494 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00159 * 359.95444 * 19 18 17 22 22 N 1.31612 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99812 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47191 * 89.99603 * 23 21 19 25 25 H 1.48502 * 109.46975 * 209.99832 * 23 21 19 26 26 H 1.48497 * 109.47069 * 329.99707 * 23 21 19 27 27 C 1.47672 * 91.08831 * 335.70669 * 18 17 16 28 28 C 1.47344 * 121.05172 * 184.54056 * 12 10 6 29 29 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46515 * 300.00310 * 1 2 3 31 31 H 1.08997 * 109.46693 * 59.99659 * 1 2 3 32 32 H 1.08993 * 109.46743 * 239.99629 * 2 1 3 33 33 H 1.09003 * 109.46645 * 119.99894 * 2 1 3 34 34 H 1.08997 * 109.47227 * 59.99966 * 3 2 1 35 35 H 1.09001 * 109.46976 * 299.99870 * 3 2 1 36 36 H 1.09009 * 109.47146 * 59.99623 * 4 3 2 37 37 H 1.09003 * 109.47517 * 300.00527 * 4 3 2 38 38 H 1.09006 * 109.46795 * 63.79787 * 5 4 3 39 39 H 1.08996 * 109.47146 * 303.79984 * 5 4 3 40 40 H 1.08996 * 109.47667 * 54.61369 * 8 6 5 41 41 H 1.09007 * 109.47153 * 174.62030 * 8 6 5 42 42 H 1.09001 * 109.46694 * 296.70909 * 9 8 6 43 43 H 1.08999 * 109.46826 * 56.70587 * 9 8 6 44 44 H 1.08994 * 109.47039 * 176.70723 * 9 8 6 45 45 H 1.09004 * 109.59360 * 247.54292 * 13 12 10 46 46 H 1.08998 * 109.59331 * 7.99268 * 13 12 10 47 47 H 1.09000 * 109.49355 * 174.08673 * 14 13 12 48 48 H 1.09004 * 109.49516 * 294.14267 * 14 13 12 49 49 H 1.08997 * 113.78898 * 22.97877 * 17 16 15 50 50 H 1.08997 * 113.79143 * 154.45174 * 17 16 15 51 51 H 0.96995 * 120.00252 * 179.97438 * 22 21 19 52 52 H 1.08996 * 113.79514 * 270.02786 * 27 18 17 53 53 H 1.09008 * 113.89528 * 138.57081 * 27 18 17 54 54 H 1.08997 * 109.75003 * 348.03884 * 28 12 10 55 55 H 1.09003 * 109.74752 * 108.75895 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6072 2.8859 -0.0948 7 1 5.9164 2.3326 -0.9817 8 6 6.1960 2.2219 1.1515 9 6 5.8747 3.0721 2.3823 10 6 6.1037 4.3055 -0.1899 11 8 5.4059 5.2192 0.1966 12 7 7.3232 4.5599 -0.7042 13 6 8.1457 3.4822 -1.2759 14 6 8.5879 3.8949 -2.6836 15 8 9.2335 5.1706 -2.6230 16 6 8.4065 6.2145 -2.1162 17 6 7.3215 6.6762 -3.0984 18 7 8.3111 7.6695 -3.5623 19 6 8.4993 8.3634 -4.7277 20 1 9.3252 9.0536 -4.8177 21 6 7.6291 8.1795 -5.7934 22 7 6.6232 7.3378 -5.6840 23 14 7.8865 9.1257 -7.3833 24 1 8.7657 8.3429 -8.2885 25 1 6.5750 9.3532 -8.0418 26 1 8.5233 10.4333 -7.0836 27 6 9.0155 7.6150 -2.2656 28 6 7.8724 5.9271 -0.7174 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9338 0.9284 -0.8891 37 1 3.9331 0.9287 0.8908 38 1 3.7731 3.3793 0.9217 39 1 3.6627 3.4175 -0.8544 40 1 5.7634 1.2289 1.2729 41 1 7.2771 2.1364 1.0412 42 1 6.3562 4.0454 2.2873 43 1 4.7957 3.2066 2.4594 44 1 6.2431 2.5702 3.2769 45 1 9.0233 3.3208 -0.6497 46 1 7.5595 2.5650 -1.3309 47 1 9.2831 3.1540 -3.0783 48 1 7.7160 3.9587 -3.3347 49 1 7.0620 5.9302 -3.8495 50 1 6.4496 7.1168 -2.6151 51 1 6.0149 7.2096 -6.4285 52 1 8.6474 8.3348 -1.5346 53 1 10.1020 7.6149 -2.3530 54 1 7.0874 6.6417 -0.4701 55 1 8.6837 6.0051 0.0064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484777967.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = -63.881650 kcal Electronic energy + Delta-G solvation = -31294.103341 eV Core-core repulsion = 27331.515539 eV Total energy + Delta-G solvation = -3962.587802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.89036 -40.49940 -37.88557 -37.60988 -35.82985 -35.58943 -34.30704 -32.21320 -31.57464 -29.68764 -29.21171 -27.79006 -26.89880 -25.83414 -24.63348 -24.09382 -23.36410 -22.03701 -21.46315 -20.39346 -19.50987 -18.84821 -18.21285 -17.58764 -17.09079 -17.03605 -16.80589 -16.34222 -15.93832 -15.78114 -15.65869 -15.35826 -15.02559 -14.91014 -14.63356 -14.40529 -14.23834 -14.23235 -13.76833 -13.68085 -13.60202 -13.30678 -13.02724 -12.91059 -12.83543 -12.79405 -12.73873 -12.54567 -12.24940 -12.07276 -12.00880 -11.96872 -11.83511 -11.73489 -11.63179 -11.47838 -11.41497 -11.33031 -11.18403 -10.99422 -10.81245 -10.53703 -9.51415 -8.97894 -7.93545 -5.28478 1.41438 1.44892 1.53201 1.63956 1.90227 2.43334 2.63498 3.23708 3.31594 3.43512 3.61780 3.70698 3.78038 3.87674 3.96317 4.04893 4.12766 4.17952 4.22607 4.30918 4.35013 4.42094 4.46819 4.55489 4.59712 4.60804 4.62447 4.67722 4.73277 4.78559 4.78888 4.82637 4.87266 4.94544 4.95469 5.00106 5.04876 5.09670 5.13868 5.17106 5.20434 5.24321 5.25577 5.30361 5.35329 5.36436 5.43646 5.49432 5.52546 5.60807 5.85424 6.32248 6.40682 6.85373 7.17503 7.55429 8.48712 9.23021 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.002802 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.979905 B = 9988.949065 C =11382.808692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.101 4.101 6 C -0.103 4.103 7 H 0.112 0.888 8 C -0.105 4.105 9 C -0.155 4.155 10 C 0.516 3.484 11 O -0.584 6.584 12 N -0.615 5.615 13 C 0.078 3.922 14 C 0.037 3.963 15 O -0.361 6.361 16 C 0.080 3.920 17 C 0.153 3.847 18 N -0.635 5.635 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.072 4.072 22 N -0.957 5.957 23 Si 0.984 3.016 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.134 3.866 28 C 0.108 3.892 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.126 0.874 47 H 0.135 0.865 48 H 0.029 0.971 49 H 0.039 0.961 50 H 0.005 0.995 51 H 0.247 0.753 52 H 0.069 0.931 53 H 0.068 0.932 54 H 0.078 0.922 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -19.900 16.438 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.123 4.123 7 H 0.130 0.870 8 C -0.143 4.143 9 C -0.212 4.212 10 C 0.307 3.693 11 O -0.463 6.463 12 N -0.348 5.348 13 C -0.044 4.044 14 C -0.039 4.039 15 O -0.280 6.280 16 C 0.038 3.962 17 C 0.027 3.973 18 N -0.362 5.362 19 C -0.361 4.361 20 H 0.105 0.895 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.811 3.189 24 H -0.209 1.209 25 H -0.221 1.221 26 H -0.191 1.191 27 C 0.009 3.991 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.144 0.856 47 H 0.153 0.847 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.056 0.944 52 H 0.086 0.914 53 H 0.086 0.914 54 H 0.096 0.904 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.093 -19.282 16.272 25.317 hybrid contribution -0.697 1.272 -1.302 1.949 sum -2.790 -18.011 14.969 23.585 Atomic orbital electron populations 1.21808 0.96107 1.01894 1.01551 1.21513 0.95748 0.96120 1.02482 1.21625 0.95719 0.97318 1.01414 1.21607 0.95099 0.94647 1.03337 1.21426 0.92572 0.98219 1.01700 1.21511 0.97401 0.90887 1.02541 0.86995 1.21546 1.01687 0.99823 0.91217 1.21829 1.01591 0.99100 0.98667 1.21384 0.79748 0.92637 0.75568 1.90664 1.56277 1.48646 1.50752 1.48319 1.17691 1.08772 1.59975 1.22696 0.96935 0.90593 0.94142 1.23197 0.98747 0.85447 0.96545 1.87881 1.37646 1.17314 1.85121 1.23050 0.92383 0.89059 0.91687 1.22490 0.91024 0.90783 0.92992 1.46205 1.30743 1.49553 1.09651 1.19442 1.09621 1.17762 0.89232 0.89504 1.25710 0.97470 1.01343 1.01895 1.70039 1.18273 1.40341 1.31918 0.85002 0.76490 0.78427 0.78947 1.20946 1.22150 1.19119 1.22713 0.97935 0.91318 0.87183 1.21868 0.99072 0.84797 0.95908 0.92042 0.92864 0.93395 0.91779 0.91114 0.92477 0.93376 0.91025 0.89787 0.92009 0.94397 0.87780 0.89993 0.95390 0.92937 0.90878 0.87748 0.85599 0.84727 0.95235 0.94246 0.97698 0.94416 0.91375 0.91380 0.90377 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.52 5.93 30.60 0.18 -1.34 16 3 C -0.12 -1.93 5.21 30.59 0.16 -1.77 16 4 C -0.11 -1.57 4.85 30.59 0.15 -1.43 16 5 C -0.10 -2.15 3.96 30.59 0.12 -2.03 16 6 C -0.10 -2.01 1.71 -11.54 -0.02 -2.02 16 7 H 0.11 1.74 6.26 -2.38 -0.01 1.72 16 8 C -0.11 -1.43 5.53 30.60 0.17 -1.26 16 9 C -0.15 -2.73 9.28 71.98 0.67 -2.06 16 10 C 0.52 15.23 5.53 87.66 0.48 15.72 16 11 O -0.58 -22.58 15.31 -3.04 -0.05 -22.62 16 12 N -0.61 -17.33 3.03 -818.68 -2.48 -19.81 16 13 C 0.08 1.57 6.10 86.33 0.53 2.10 16 14 C 0.04 1.05 6.88 72.05 0.50 1.55 16 15 O -0.36 -13.64 10.52 -148.98 -1.57 -15.20 16 16 C 0.08 3.19 1.21 -10.63 -0.01 3.18 16 17 C 0.15 7.98 6.64 86.31 0.57 8.55 16 18 N -0.64 -34.94 3.70 -729.24 -2.70 -37.63 16 19 C -0.23 -13.75 10.70 84.03 0.90 -12.86 16 20 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.96 -60.86 11.39 21.65 0.25 -60.61 16 23 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.13 5.68 8.33 86.30 0.72 6.40 16 28 C 0.11 3.54 5.76 86.04 0.50 4.04 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.90 6.60 -2.39 -0.02 0.89 16 38 H 0.06 1.48 6.22 -2.38 -0.01 1.47 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.90 6.36 -2.39 -0.02 0.89 16 41 H 0.08 0.90 7.78 -2.38 -0.02 0.88 16 42 H 0.03 0.64 7.04 -2.39 -0.02 0.63 16 43 H 0.05 1.02 6.35 -2.39 -0.02 1.00 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.13 1.67 5.52 -2.39 -0.01 1.66 16 47 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.03 1.01 7.20 -2.39 -0.02 0.99 16 49 H 0.04 2.31 6.31 -2.39 -0.02 2.29 16 50 H 0.01 0.30 7.92 -2.39 -0.02 0.28 16 51 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 52 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 53 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 54 H 0.08 2.96 6.86 -2.39 -0.02 2.94 16 55 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -80.05 416.52 3.11 -76.94 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.84 Total: 17.61 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.79 Total: 11.67 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -4.94 Total: -118.06 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.61 Total: -37.83 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -80.05 3.11 -76.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484777967.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.057 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds