Wall clock time and date at job start Tue Mar 31 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46707 * 2 1 4 4 C 1.52998 * 109.47438 * 65.00135 * 3 2 1 5 5 C 1.53000 * 109.47119 * 185.35929 * 4 3 2 6 6 C 1.53007 * 109.46847 * 185.00143 * 3 2 1 7 7 H 1.08997 * 109.46913 * 186.52172 * 6 3 2 8 8 C 1.53003 * 109.46852 * 306.52110 * 6 3 2 9 9 C 1.50699 * 109.47094 * 66.52208 * 6 3 2 10 10 O 1.21283 * 120.00215 * 359.46165 * 9 6 3 11 11 N 1.34777 * 120.00052 * 179.46796 * 9 6 3 12 12 C 1.46493 * 120.00354 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.47496 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.52332 * 307.79940 * 13 12 11 15 15 C 1.55054 * 110.58565 * 185.00206 * 13 12 11 16 16 C 1.55034 * 102.13046 * 204.93604 * 15 13 12 17 17 C 1.53330 * 103.78100 * 20.86195 * 16 15 13 18 18 C 1.52652 * 115.55858 * 133.64632 * 17 16 15 19 19 N 1.47226 * 87.78368 * 90.04147 * 18 17 16 20 20 C 1.36929 * 135.96857 * 206.41321 * 19 18 17 21 21 H 1.08000 * 120.00302 * 8.93736 * 20 19 18 22 22 C 1.38813 * 119.99894 * 188.93299 * 20 19 18 23 23 N 1.31621 * 119.99923 * 194.74133 * 22 20 19 24 24 Si 1.86802 * 120.00228 * 14.74078 * 22 20 19 25 25 H 1.48504 * 109.47115 * 270.00266 * 24 22 20 26 26 H 1.48497 * 109.47257 * 150.00175 * 24 22 20 27 27 H 1.48506 * 109.46824 * 29.99854 * 24 22 20 28 28 C 1.47228 * 88.06171 * 26.66767 * 19 18 17 29 29 O 1.42832 * 108.33126 * 1.60497 * 17 16 15 30 30 H 1.09001 * 109.47020 * 60.00226 * 1 2 3 31 31 H 1.09000 * 109.46502 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46941 * 299.99995 * 1 2 3 33 33 H 1.08997 * 109.47365 * 240.00307 * 2 1 3 34 34 H 1.09001 * 109.47397 * 119.99385 * 2 1 3 35 35 H 1.09005 * 109.47010 * 304.99487 * 3 2 1 36 36 H 1.09000 * 109.46901 * 305.35664 * 4 3 2 37 37 H 1.09001 * 109.47348 * 65.35202 * 4 3 2 38 38 H 1.08992 * 109.47320 * 60.75969 * 5 4 3 39 39 H 1.09004 * 109.47022 * 180.76604 * 5 4 3 40 40 H 1.08999 * 109.46665 * 300.76110 * 5 4 3 41 41 H 1.08997 * 109.47311 * 60.00306 * 8 6 3 42 42 H 1.08999 * 109.46878 * 180.02562 * 8 6 3 43 43 H 1.09002 * 109.46554 * 299.99895 * 8 6 3 44 44 H 0.97005 * 119.99282 * 359.97438 * 11 9 6 45 45 H 1.09002 * 109.46766 * 59.99870 * 12 11 9 46 46 H 1.08999 * 109.47145 * 300.00108 * 12 11 9 47 47 H 1.09000 * 110.86988 * 86.78001 * 15 13 12 48 48 H 1.09000 * 111.05004 * 323.17530 * 15 13 12 49 49 H 1.08993 * 110.56399 * 262.29337 * 16 15 13 50 50 H 1.08996 * 110.69146 * 139.49446 * 16 15 13 51 51 H 1.09007 * 113.50077 * 335.31764 * 18 17 16 52 52 H 1.09000 * 113.56162 * 204.78127 * 18 17 16 53 53 H 0.96999 * 120.00260 * 354.92052 * 23 22 20 54 54 H 1.09001 * 113.49719 * 88.06034 * 28 19 18 55 55 H 1.08997 * 113.49620 * 218.60225 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0272 3.6045 1.2522 6 6 3.5648 1.4444 -0.1258 7 1 3.9377 2.4621 -0.0097 8 6 4.1673 0.5533 0.9622 9 6 3.9577 0.9171 -1.4817 10 8 3.1027 0.5645 -2.2663 11 7 5.2592 0.8373 -1.8226 12 6 5.6412 0.3242 -3.1404 13 6 7.1655 0.3392 -3.2715 14 1 7.5604 1.3252 -3.0269 15 6 7.5939 -0.0804 -4.7014 16 6 9.0260 -0.6255 -4.4656 17 6 9.0482 -0.9588 -2.9692 18 6 9.6402 -2.3181 -2.6059 19 7 10.9509 -1.6556 -2.5020 20 6 12.2594 -2.0355 -2.6370 21 1 12.5003 -3.0162 -3.0198 22 6 13.2765 -1.1601 -2.2818 23 7 14.5117 -1.3935 -2.6717 24 14 12.8920 0.3493 -1.2506 25 1 12.5614 1.4883 -2.1443 26 1 14.0743 0.6972 -0.4222 27 1 11.7345 0.0624 -0.3656 28 6 10.2386 -0.4072 -2.1830 29 8 7.7583 -0.6732 -2.4261 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6053 1.9816 -0.8419 36 1 0.5571 2.0415 1.4432 37 1 2.1456 1.6462 2.1420 38 1 1.5063 4.0880 0.4259 39 1 1.7511 4.0888 2.1889 40 1 3.1035 3.6896 1.1027 41 1 3.7945 -0.4644 0.8462 42 1 5.2536 0.5549 0.8729 43 1 3.8831 0.9348 1.9430 44 1 5.9430 1.1196 -1.1951 45 1 5.2040 0.9532 -3.9159 46 1 5.2765 -0.6969 -3.2524 47 1 7.6112 0.7804 -5.3698 48 1 6.9410 -0.8606 -5.0926 49 1 9.7690 0.1369 -4.6990 50 1 9.1994 -1.5224 -5.0602 51 1 9.5844 -3.0467 -3.4148 52 1 9.2761 -2.7125 -1.6572 53 1 14.7246 -2.2137 -3.1437 54 1 10.0364 -0.2819 -1.1192 55 1 10.6879 0.4771 -2.6348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484783143.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:02 Heat of formation + Delta-G solvation = -67.913732 kcal Electronic energy + Delta-G solvation = -30628.904192 eV Core-core repulsion = 26666.141546 eV Total energy + Delta-G solvation = -3962.762646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.67886 -41.14290 -38.64752 -37.97602 -35.69437 -34.49673 -33.28528 -32.84391 -32.44364 -30.70990 -28.74330 -27.21902 -27.14474 -25.76244 -24.47855 -23.50516 -23.17245 -22.36144 -21.61040 -20.76413 -19.73510 -19.48499 -18.15917 -17.80027 -17.41244 -17.11654 -16.43493 -16.21797 -16.07674 -15.72269 -15.44771 -15.36178 -15.21564 -15.05880 -14.85201 -14.54999 -14.20672 -14.03283 -13.72829 -13.53915 -13.37851 -13.22635 -13.17283 -12.97413 -12.72752 -12.69372 -12.61183 -12.49659 -12.43206 -12.25258 -12.17089 -12.05590 -11.86752 -11.76254 -11.46162 -11.38144 -11.34789 -11.26621 -11.06800 -10.89744 -10.53197 -10.37749 -10.03665 -9.29426 -8.64908 -5.50729 1.37854 1.50554 1.65598 1.69916 2.22485 2.51445 2.57626 3.05984 3.16153 3.41246 3.59535 3.63035 3.69746 3.83712 3.86111 3.92560 4.10612 4.19317 4.33696 4.36414 4.42975 4.45597 4.46055 4.49932 4.53494 4.61819 4.62652 4.64687 4.68988 4.71992 4.82022 4.82999 4.84209 4.92558 4.94633 4.98679 4.99580 5.06585 5.10334 5.14043 5.14576 5.18098 5.23507 5.27124 5.32918 5.34998 5.46125 5.50519 5.60202 5.64738 5.92058 6.01976 6.58061 6.66415 7.28639 7.29665 8.23116 8.86505 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002342 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.969199 B =11950.570240 C =12656.221805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.156 4.156 6 C -0.104 4.104 7 H 0.116 0.884 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.576 6.576 11 N -0.721 5.721 12 C 0.135 3.865 13 C 0.062 3.938 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.116 4.116 17 C 0.087 3.913 18 C 0.121 3.879 19 N -0.644 5.644 20 C -0.290 4.290 21 H 0.051 0.949 22 C -0.081 4.081 23 N -0.965 5.965 24 Si 1.100 2.900 25 H -0.272 1.272 26 H -0.301 1.301 27 H -0.257 1.257 28 C 0.086 3.914 29 O -0.362 6.362 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.412 0.588 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.054 0.946 52 H 0.046 0.954 53 H 0.247 0.753 54 H 0.055 0.945 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.801 10.798 5.570 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.081 4.081 4 C -0.156 4.156 5 C -0.213 4.213 6 C -0.125 4.125 7 H 0.134 0.866 8 C -0.204 4.204 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.373 5.373 12 C 0.011 3.989 13 C 0.005 3.995 14 H 0.110 0.890 15 C -0.172 4.172 16 C -0.153 4.153 17 C 0.046 3.954 18 C -0.004 4.004 19 N -0.374 5.374 20 C -0.417 4.417 21 H 0.069 0.931 22 C -0.273 4.273 23 N -0.610 5.610 24 Si 0.924 3.076 25 H -0.198 1.198 26 H -0.229 1.229 27 H -0.182 1.182 28 C -0.039 4.039 29 O -0.280 6.280 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.248 0.752 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.072 0.928 52 H 0.064 0.936 53 H 0.057 0.943 54 H 0.073 0.927 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.624 11.703 5.803 31.464 hybrid contribution 0.587 -2.026 -0.750 2.239 sum -28.037 9.677 5.053 30.087 Atomic orbital electron populations 1.21774 0.95580 1.01433 1.01744 1.21679 0.96315 0.96663 1.01589 1.20928 0.92327 0.96374 0.98477 1.21669 1.01776 0.95755 0.96449 1.21853 1.01779 0.95823 1.01862 1.21442 0.97877 1.02145 0.90993 0.86576 1.21889 1.00884 0.99213 0.98377 1.21197 0.81858 0.77157 0.89719 1.90656 1.50559 1.50417 1.53991 1.46002 1.07858 1.65526 1.17874 1.21316 0.91919 1.00023 0.85669 1.23577 0.92557 0.92895 0.90516 0.88973 1.23135 0.94732 1.02955 0.96368 1.22390 0.98260 1.02277 0.92409 1.23127 0.82283 0.96100 0.93899 1.22569 0.84050 0.94673 0.99120 1.45914 1.00396 1.08192 1.82940 1.19922 0.80795 1.01940 1.39091 0.93136 1.27097 0.92044 1.06672 1.01510 1.71012 1.20437 1.26536 1.42970 0.83340 0.75155 0.72957 0.76116 1.19821 1.22918 1.18199 1.23298 0.91167 0.90807 0.98621 1.88758 1.28909 1.58280 1.52044 0.93705 0.93061 0.91437 0.93168 0.91565 0.92272 0.91237 0.90778 0.93241 0.92028 0.92131 0.92826 0.91702 0.89488 0.75179 0.89028 0.92122 0.87358 0.89315 0.90661 0.90517 0.92782 0.93612 0.94332 0.92747 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 71.98 0.70 -1.55 16 2 C -0.13 -2.16 4.49 30.60 0.14 -2.03 16 3 C -0.06 -0.93 1.27 -10.79 -0.01 -0.94 16 4 C -0.12 -1.26 5.16 30.59 0.16 -1.10 16 5 C -0.16 -1.46 9.70 71.98 0.70 -0.77 16 6 C -0.10 -1.47 2.39 -11.54 -0.03 -1.50 16 7 H 0.12 1.24 6.28 -2.39 -0.02 1.22 16 8 C -0.15 -1.82 8.35 71.98 0.60 -1.22 16 9 C 0.51 10.49 6.84 87.66 0.60 11.09 16 10 O -0.58 -16.03 14.06 -3.04 -0.04 -16.07 16 11 N -0.72 -13.04 5.45 -463.07 -2.52 -15.57 16 12 C 0.13 2.58 5.41 86.38 0.47 3.04 16 13 C 0.06 1.25 3.38 31.30 0.11 1.35 16 14 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 15 C -0.13 -2.56 6.60 31.99 0.21 -2.35 16 16 C -0.12 -3.21 6.46 31.40 0.20 -3.01 16 17 C 0.09 2.86 1.66 -10.81 -0.02 2.85 16 18 C 0.12 4.80 8.20 83.40 0.68 5.49 16 19 N -0.64 -31.23 3.58 -738.99 -2.64 -33.87 16 20 C -0.29 -16.88 11.03 84.04 0.93 -15.95 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.96 -61.99 13.70 21.65 0.30 -61.69 16 24 Si 1.10 52.54 25.53 68.60 1.75 54.29 16 25 H -0.27 -11.95 6.98 99.48 0.69 -11.25 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 27 H -0.26 -11.15 5.62 99.48 0.56 -10.59 16 28 C 0.09 3.45 5.11 83.50 0.43 3.87 16 29 O -0.36 -10.13 11.02 -148.98 -1.64 -11.78 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.81 6.45 -2.39 -0.02 0.79 16 33 H 0.05 1.18 6.00 -2.39 -0.01 1.16 16 34 H 0.07 1.02 6.64 -2.39 -0.02 1.00 16 35 H 0.06 1.11 7.91 -2.38 -0.02 1.09 16 36 H 0.07 0.71 6.33 -2.39 -0.02 0.70 16 37 H 0.07 0.67 6.39 -2.39 -0.02 0.66 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.06 0.51 6.41 -2.39 -0.02 0.50 16 41 H 0.05 0.81 6.44 -2.39 -0.02 0.79 16 42 H 0.06 0.78 7.60 -2.39 -0.02 0.76 16 43 H 0.09 0.79 6.51 -2.39 -0.02 0.78 16 44 H 0.41 6.13 7.93 -92.70 -0.73 5.40 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.57 8.06 -2.39 -0.02 1.55 16 49 H 0.07 2.20 7.82 -2.39 -0.02 2.18 16 50 H 0.08 2.21 7.81 -2.39 -0.02 2.20 16 51 H 0.05 2.07 7.91 -2.38 -0.02 2.05 16 52 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 54 H 0.05 2.16 6.94 -2.39 -0.02 2.15 16 55 H 0.05 2.13 6.16 -2.39 -0.01 2.11 16 Total: -1.00 -73.34 409.95 1.46 -71.88 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.06 Total: 19.87 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 6.32 Total: -7.06 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.87 Total: -111.13 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.68 Total: -27.85 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 1.75 Total: 54.29 kcal Total: -73.34 1.46 -71.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484783143.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds