Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47491 * 2 1 4 4 C 1.53002 * 109.47145 * 239.99773 * 2 1 3 5 5 C 1.53000 * 109.46931 * 119.99963 * 2 1 3 6 6 C 1.52997 * 109.47144 * 60.00070 * 5 2 1 7 7 H 1.09007 * 115.54993 * 29.32736 * 6 5 2 8 8 C 1.53077 * 117.51434 * 243.60818 * 6 5 2 9 9 C 1.52997 * 117.50156 * 174.99935 * 6 5 2 10 10 H 1.09001 * 117.49964 * 359.97438 * 9 6 5 11 11 C 1.50700 * 117.50173 * 214.99948 * 9 6 5 12 12 O 1.21286 * 119.99994 * 0.09239 * 11 9 6 13 13 N 1.34772 * 120.00261 * 180.08349 * 11 9 6 14 14 C 1.46501 * 120.00316 * 175.34864 * 13 11 9 15 15 C 1.53005 * 109.54417 * 62.02427 * 14 13 11 16 16 N 1.46502 * 109.46801 * 58.55170 * 15 14 13 17 17 C 1.36937 * 119.99784 * 174.83999 * 16 15 14 18 18 H 1.07995 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99687 * 180.27727 * 17 16 15 20 20 N 1.31618 * 120.00188 * 359.71948 * 19 17 16 21 21 Si 1.86801 * 119.99641 * 179.72406 * 19 17 16 22 22 H 1.48491 * 109.47516 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47296 * 120.00007 * 21 19 17 24 24 H 1.48508 * 109.46869 * 239.99536 * 21 19 17 25 25 C 1.53178 * 109.61986 * 182.25104 * 14 13 11 26 26 C 1.53086 * 109.16332 * 62.92638 * 25 14 13 27 27 O 1.42909 * 109.41429 * 57.61414 * 26 25 14 28 28 C 1.42896 * 114.09352 * 298.83804 * 27 26 25 29 29 C 1.53096 * 109.41697 * 61.16007 * 28 27 26 30 30 H 1.09000 * 109.47331 * 300.00120 * 1 2 3 31 31 H 1.09003 * 109.46891 * 59.99403 * 1 2 3 32 32 H 1.09003 * 109.47587 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47490 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47225 * 300.00118 * 3 2 1 35 35 H 1.09009 * 109.46983 * 59.99851 * 3 2 1 36 36 H 1.08999 * 109.47441 * 300.00190 * 4 2 1 37 37 H 1.09003 * 109.46554 * 60.00617 * 4 2 1 38 38 H 1.09000 * 109.46757 * 180.02562 * 4 2 1 39 39 H 1.08995 * 109.47705 * 299.99867 * 5 2 1 40 40 H 1.08999 * 109.47010 * 179.97438 * 5 2 1 41 41 H 1.09002 * 117.51286 * 145.04256 * 8 6 5 42 42 H 1.08993 * 117.49209 * 0.02562 * 8 6 5 43 43 H 0.97003 * 120.00050 * 355.35043 * 13 11 9 44 44 H 1.09005 * 109.47067 * 298.55581 * 15 14 13 45 45 H 1.08995 * 109.47152 * 178.55256 * 15 14 13 46 46 H 0.97003 * 120.00085 * 354.83582 * 16 15 14 47 47 H 0.97003 * 120.00120 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.52307 * 182.83819 * 25 14 13 49 49 H 1.09004 * 109.51765 * 303.02400 * 25 14 13 50 50 H 1.08999 * 109.48538 * 297.62916 * 26 25 14 51 51 H 1.09002 * 109.48282 * 177.59287 * 26 25 14 52 52 H 1.09001 * 109.48112 * 301.17490 * 28 27 26 53 53 H 1.09008 * 109.47821 * 181.14036 * 28 27 26 54 54 H 1.08994 * 109.51841 * 182.48123 * 29 28 27 55 55 H 1.09001 * 109.52217 * 62.29535 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2492 7 1 1.3623 -2.6031 0.2658 8 6 0.5857 -2.5799 2.3799 9 6 2.0283 -3.0893 2.3609 10 1 2.7198 -2.6707 3.0921 11 6 2.2499 -4.5386 2.0126 12 8 2.0354 -4.9310 0.8852 13 7 2.6866 -5.3987 2.9538 14 6 2.8048 -6.8257 2.6439 15 6 3.8233 -7.0226 1.5191 16 7 5.1181 -6.4753 1.9316 17 6 6.2151 -6.6315 1.1269 18 1 6.1257 -7.1583 0.1885 19 6 7.4432 -6.1180 1.5205 20 7 7.5522 -5.4763 2.6645 21 14 8.9412 -6.3376 0.4263 22 1 8.5563 -7.0894 -0.7950 23 1 9.4726 -5.0056 0.0413 24 1 9.9860 -7.0931 1.1634 25 6 3.2653 -7.5865 3.8911 26 6 2.2028 -7.4488 4.9845 27 8 0.9535 -7.9435 4.4980 28 6 0.4502 -7.2395 3.3609 29 6 1.4423 -7.3687 2.2021 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 1.6766 -0.2075 2.1392 40 1 3.1299 -0.7217 1.2490 41 1 -0.2031 -3.2931 2.1404 42 1 0.3277 -1.8258 3.1233 43 1 2.9227 -5.0730 3.8365 44 1 3.4794 -6.5059 0.6230 45 1 3.9293 -8.0864 1.3071 46 1 5.1984 -6.0024 2.7747 47 1 8.4105 -5.1178 2.9396 48 1 3.4012 -8.6398 3.6458 49 1 4.2082 -7.1693 4.2448 50 1 2.0964 -6.3990 5.2579 51 1 2.5053 -8.0236 5.8599 52 1 0.3209 -6.1869 3.6131 53 1 -0.5099 -7.6635 3.0665 54 1 1.0813 -6.7958 1.3480 55 1 1.5414 -8.4176 1.9227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502626012.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -86.579483 kcal Electronic energy + Delta-G solvation = -31682.567591 eV Core-core repulsion = 27718.995538 eV Total energy + Delta-G solvation = -3963.572054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.83101 -40.17695 -38.92278 -37.33920 -36.32818 -35.45453 -33.19981 -32.27472 -32.01663 -28.67158 -28.19949 -28.12567 -28.04724 -25.65694 -25.11816 -24.49211 -23.03992 -22.21060 -21.11886 -20.35738 -19.60245 -19.29355 -18.37067 -17.20156 -17.02930 -16.87715 -16.36277 -16.24255 -16.08746 -15.55829 -15.48236 -15.39088 -15.18076 -15.05011 -14.85640 -14.27489 -14.11432 -14.02293 -13.80517 -13.60727 -13.26960 -13.16140 -13.09985 -13.07344 -12.84243 -12.82346 -12.60109 -12.55516 -12.36091 -12.32373 -12.11222 -11.98222 -11.87330 -11.63786 -11.61944 -11.37127 -11.32084 -11.10638 -10.98211 -10.84148 -10.65088 -10.41346 -9.88915 -8.97350 -7.98434 -5.24548 1.42401 1.43043 1.53000 1.62903 2.20551 2.52351 2.91901 2.95318 3.34293 3.52658 3.63179 3.76040 3.78737 3.84725 3.91583 3.99089 4.04309 4.08690 4.15539 4.23460 4.27643 4.34311 4.44669 4.48404 4.65370 4.70260 4.73683 4.75310 4.78018 4.79768 4.82187 4.84953 4.88189 4.92319 4.96099 4.99756 5.06164 5.07020 5.10581 5.12757 5.16028 5.16213 5.20806 5.27176 5.37309 5.44234 5.46419 5.56700 5.58192 5.67687 6.23563 6.24414 6.66572 7.31952 7.38811 8.05285 8.34496 9.24683 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007317 B = 0.004279 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.895203 B = 6542.455921 C = 9539.218058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.119 4.119 7 H 0.096 0.904 8 C -0.119 4.119 9 C -0.205 4.205 10 H 0.129 0.871 11 C 0.544 3.456 12 O -0.572 6.572 13 N -0.703 5.703 14 C 0.182 3.818 15 C 0.145 3.855 16 N -0.728 5.728 17 C -0.245 4.245 18 H 0.062 0.938 19 C -0.066 4.066 20 N -0.962 5.962 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.288 1.288 25 C -0.147 4.147 26 C 0.067 3.933 27 O -0.392 6.392 28 C 0.073 3.927 29 C -0.157 4.157 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.406 0.594 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.113 0.887 52 H 0.055 0.945 53 H 0.109 0.891 54 H 0.077 0.923 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 9.261 3.970 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.113 4.113 6 C -0.137 4.137 7 H 0.114 0.886 8 C -0.156 4.156 9 C -0.226 4.226 10 H 0.147 0.853 11 C 0.332 3.668 12 O -0.452 6.452 13 N -0.354 5.354 14 C 0.095 3.905 15 C 0.017 3.983 16 N -0.371 5.371 17 C -0.377 4.377 18 H 0.080 0.920 19 C -0.259 4.259 20 N -0.612 5.612 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.214 1.214 25 C -0.185 4.185 26 C -0.010 4.010 27 O -0.311 6.311 28 C -0.003 4.003 29 C -0.196 4.196 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.242 0.758 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.211 0.789 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.131 0.869 52 H 0.073 0.927 53 H 0.127 0.873 54 H 0.096 0.904 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.969 8.736 3.110 21.114 hybrid contribution 1.965 0.055 -0.440 2.015 sum -17.004 8.791 2.669 19.327 Atomic orbital electron populations 1.21832 0.93478 1.01820 1.02145 1.20490 0.96518 0.95370 0.94055 1.21855 1.00633 0.94726 1.02461 1.21961 1.00305 1.00108 0.97973 1.21267 0.99649 0.91629 0.98734 1.22429 1.02061 0.94952 0.94288 0.88613 1.23168 0.89274 1.02437 1.00725 1.22333 1.02312 0.91404 1.06529 0.85284 1.20049 0.75249 0.87462 0.84031 1.90606 1.53255 1.79407 1.21954 1.45834 1.66928 1.06899 1.15766 1.20389 0.94492 0.80678 0.94915 1.21112 0.85553 0.95485 0.96153 1.42250 1.04208 1.67199 1.23427 1.19559 0.88703 1.28767 1.00708 0.92019 1.25389 1.00093 1.01428 0.98943 1.69774 1.24577 1.43708 1.23176 0.85173 0.79926 0.76972 0.78302 1.19905 1.21979 1.21446 1.22329 0.99967 1.01131 0.95054 1.22663 0.82350 1.00292 0.95666 1.87896 1.37325 1.59162 1.46687 1.22522 0.96475 0.96901 0.84436 1.22461 0.94828 1.01954 1.00366 0.91514 0.92547 0.93015 0.93437 0.92063 0.91522 0.93618 0.91947 0.94071 0.89636 0.93047 0.88699 0.85161 0.75794 0.96506 0.96494 0.78928 0.93939 0.90386 0.90876 0.91810 0.86891 0.92697 0.87330 0.90397 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.23 71.98 0.59 -1.51 16 2 C -0.06 -1.18 0.80 -52.18 -0.04 -1.22 16 3 C -0.14 -2.21 8.47 71.98 0.61 -1.60 16 4 C -0.15 -3.28 8.23 71.98 0.59 -2.68 16 5 C -0.08 -1.52 4.55 30.59 0.14 -1.38 16 6 C -0.12 -2.81 3.77 -10.77 -0.04 -2.85 16 7 H 0.10 2.80 5.58 -2.38 -0.01 2.78 16 8 C -0.12 -2.18 9.88 30.62 0.30 -1.88 16 9 C -0.20 -5.21 5.91 -11.54 -0.07 -5.27 16 10 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 11 C 0.54 18.06 7.02 87.66 0.62 18.67 16 12 O -0.57 -23.33 12.51 -3.05 -0.04 -23.37 16 13 N -0.70 -21.55 3.75 -422.37 -1.58 -23.14 16 14 C 0.18 6.04 0.32 3.72 0.00 6.05 16 15 C 0.14 6.45 4.98 86.38 0.43 6.88 16 16 N -0.73 -38.01 5.15 -343.44 -1.77 -39.78 16 17 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 18 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.96 -58.27 13.06 21.65 0.28 -57.99 16 21 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 22 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 C -0.15 -4.38 4.76 30.68 0.15 -4.23 16 26 C 0.07 1.53 6.67 72.01 0.48 2.01 16 27 O -0.39 -9.83 10.77 -148.98 -1.60 -11.43 16 28 C 0.07 1.72 6.68 72.01 0.48 2.21 16 29 C -0.16 -4.62 4.74 30.69 0.15 -4.48 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.89 7.20 -2.39 -0.02 0.87 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.04 1.16 6.14 -2.39 -0.01 1.15 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.35 7.88 -2.39 -0.02 1.33 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.13 1.63 8.03 -2.39 -0.02 1.61 16 43 H 0.41 10.67 7.61 -92.71 -0.71 9.97 16 44 H 0.02 0.86 6.21 -2.38 -0.01 0.85 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.38 20.02 6.54 -92.71 -0.61 19.41 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.47 7.18 -2.39 -0.02 2.45 16 50 H 0.06 1.27 7.15 -2.39 -0.02 1.25 16 51 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.05 1.22 7.75 -2.39 -0.02 1.21 16 53 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 54 H 0.08 2.58 6.13 -2.39 -0.01 2.56 16 55 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.03 418.29 2.56 -68.47 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -0.44 Total: 45.92 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.69 Total: -8.21 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -3.07 Total: -120.91 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.64 Total: -34.80 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -71.03 2.56 -68.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502626012.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.111 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds