Wall clock time and date at job start Tue Mar 31 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 C 1.53003 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46937 * 59.99970 * 4 3 2 6 6 C 1.52999 * 109.46920 * 300.00473 * 4 3 2 7 7 C 1.50696 * 109.47329 * 180.02562 * 4 3 2 8 8 O 1.21284 * 120.00033 * 0.97765 * 7 4 3 9 9 N 1.34777 * 120.00081 * 180.97851 * 7 4 3 10 10 C 1.47153 * 120.98767 * 354.40155 * 9 7 4 11 11 C 1.53299 * 108.37322 * 129.38173 * 10 9 7 12 12 O 1.42964 * 109.22733 * 52.35238 * 11 10 9 13 13 C 1.42894 * 114.20702 * 297.50481 * 12 11 10 14 14 C 1.52983 * 109.56020 * 302.52295 * 13 12 11 15 15 C 1.53194 * 109.35152 * 300.96066 * 14 13 12 16 16 N 1.46927 * 108.77534 * 305.42992 * 15 14 13 17 17 C 1.36935 * 120.64360 * 233.64764 * 16 15 14 18 18 H 1.07998 * 119.99672 * 27.69397 * 17 16 15 19 19 C 1.38809 * 120.00202 * 207.69560 * 17 16 15 20 20 N 1.31615 * 120.00258 * 29.99797 * 19 17 16 21 21 Si 1.86805 * 119.99633 * 210.00088 * 19 17 16 22 22 H 1.48504 * 109.46854 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47226 * 299.99481 * 21 19 17 24 24 H 1.48495 * 109.47388 * 59.99844 * 21 19 17 25 25 C 1.46935 * 118.71668 * 53.92487 * 16 15 14 26 26 C 1.52998 * 109.54778 * 182.22490 * 13 12 11 27 27 C 1.47156 * 120.98741 * 174.37524 * 9 7 4 28 28 H 1.09003 * 109.47579 * 299.99959 * 1 2 3 29 29 H 1.09005 * 109.47436 * 59.99890 * 1 2 3 30 30 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47076 * 240.00507 * 2 1 3 32 32 H 1.08996 * 109.47428 * 120.00054 * 2 1 3 33 33 H 1.09010 * 109.47108 * 60.00326 * 3 2 1 34 34 H 1.08995 * 109.47629 * 300.00217 * 3 2 1 35 35 H 1.09000 * 109.47022 * 167.76177 * 5 4 3 36 36 H 1.09001 * 109.46970 * 287.76708 * 5 4 3 37 37 H 1.09002 * 109.47161 * 47.76739 * 5 4 3 38 38 H 1.09001 * 109.46985 * 308.94329 * 6 4 3 39 39 H 1.08994 * 109.47590 * 68.94790 * 6 4 3 40 40 H 1.09006 * 109.47113 * 188.94559 * 6 4 3 41 41 H 1.09003 * 109.68551 * 249.10390 * 10 9 7 42 42 H 1.09008 * 109.68022 * 9.66180 * 10 9 7 43 43 H 1.08998 * 109.51157 * 172.27777 * 11 10 9 44 44 H 1.09007 * 109.51213 * 292.37565 * 11 10 9 45 45 H 1.08997 * 109.48999 * 180.99788 * 14 13 12 46 46 H 1.09000 * 109.51112 * 60.93810 * 14 13 12 47 47 H 1.08993 * 109.58999 * 185.63786 * 15 14 13 48 48 H 1.09002 * 109.70232 * 65.28800 * 15 14 13 49 49 H 0.96997 * 119.99761 * 2.34309 * 20 19 17 50 50 H 1.09000 * 109.58722 * 65.84824 * 25 16 15 51 51 H 1.08995 * 109.58814 * 186.28272 * 25 16 15 52 52 H 1.08994 * 109.49646 * 178.99877 * 26 13 12 53 53 H 1.08996 * 109.49345 * 299.05478 * 26 13 12 54 54 H 1.09001 * 109.67485 * 110.76574 * 27 9 7 55 55 H 1.08996 * 109.67571 * 350.22802 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7211 -1.2483 6 6 4.0794 0.7214 1.2502 7 6 4.0723 2.8634 0.0013 8 8 3.2842 3.7851 0.0191 9 7 5.3972 3.1097 -0.0180 10 6 6.3733 2.0132 0.0832 11 6 7.3870 2.1619 -1.0571 12 8 7.9199 3.4884 -1.0432 13 6 6.9489 4.5123 -1.2684 14 6 6.2514 4.2710 -2.6084 15 6 7.2940 4.2723 -3.7308 16 7 8.0586 5.5252 -3.6647 17 6 8.1740 6.3314 -4.7655 18 1 7.4002 6.3305 -5.5189 19 6 9.2855 7.1496 -4.9131 20 7 10.4434 6.7848 -4.4049 21 14 9.1377 8.7687 -5.8331 22 1 10.4569 9.4504 -5.8503 23 1 8.6969 8.5076 -7.2270 24 1 8.1420 9.6354 -5.1531 25 6 8.7021 5.8934 -2.3961 26 6 7.6394 5.8775 -1.2868 27 6 5.9107 4.4833 -0.1415 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.1485 0.9059 -1.3635 36 1 3.9059 -0.3499 -1.1460 37 1 3.5507 1.0936 -2.1251 38 1 3.5911 1.1348 2.1327 39 1 3.8526 -0.3419 1.1739 40 1 5.1576 0.8578 1.3341 41 1 6.8886 2.0677 1.0421 42 1 5.8599 1.0555 -0.0044 43 1 8.1954 1.4434 -0.9215 44 1 6.8921 1.9775 -2.0106 45 1 5.5236 5.0624 -2.7872 46 1 5.7427 3.3073 -2.5856 47 1 6.7922 4.2009 -4.6957 48 1 7.9689 3.4254 -3.6065 49 1 10.5283 5.9287 -3.9568 50 1 9.4882 5.1752 -2.1632 51 1 9.1299 6.8924 -2.4798 52 1 6.9007 6.6562 -1.4762 53 1 8.1175 6.0563 -0.3237 54 1 6.3775 4.7862 0.7957 55 1 5.0913 5.1613 -0.3799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503711745.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:06 Heat of formation + Delta-G solvation = -74.230883 kcal Electronic energy + Delta-G solvation = -32636.307760 eV Core-core repulsion = 28673.271182 eV Total energy + Delta-G solvation = -3963.036578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.28128 -40.56647 -38.06451 -37.74983 -35.99258 -34.86871 -33.59531 -32.74956 -31.56719 -30.17448 -28.43899 -28.34827 -27.52473 -26.02108 -24.83609 -24.29452 -23.88729 -22.59967 -21.18132 -20.46660 -19.81830 -19.43289 -17.80447 -17.48936 -17.02776 -16.83268 -16.34747 -16.23513 -16.09155 -15.88095 -15.48110 -15.34394 -15.23028 -15.13145 -15.03302 -14.82193 -14.12301 -13.87693 -13.75642 -13.60187 -13.54115 -13.31617 -13.18112 -13.09473 -12.92371 -12.65159 -12.61486 -12.52453 -12.33133 -12.13164 -12.01974 -11.98542 -11.95289 -11.87926 -11.83320 -11.68322 -11.37138 -11.31166 -11.26533 -10.91732 -10.52973 -10.40419 -9.58957 -8.91627 -8.33838 -5.37789 1.51677 1.56527 1.64029 1.79822 1.83482 2.62671 2.71419 3.17826 3.29209 3.45343 3.63482 3.64003 3.70266 3.79046 3.83404 3.91741 4.08505 4.11985 4.19790 4.25886 4.26970 4.28687 4.38950 4.47862 4.51030 4.56479 4.56815 4.61412 4.67358 4.74790 4.76012 4.77236 4.81386 4.84399 4.91569 4.91828 4.94912 4.99678 5.02668 5.09239 5.11315 5.14491 5.19636 5.22599 5.25435 5.35077 5.43274 5.43773 5.50270 5.83658 6.24425 6.30112 6.36819 7.04662 7.05060 7.77508 8.23830 8.95573 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.002877 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.989638 B = 9730.016392 C =10137.954674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.075 4.075 5 C -0.156 4.156 6 C -0.156 4.156 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.607 5.607 10 C 0.056 3.944 11 C 0.032 3.968 12 O -0.379 6.379 13 C 0.129 3.871 14 C -0.136 4.136 15 C 0.156 3.844 16 N -0.614 5.614 17 C -0.366 4.366 18 H 0.045 0.955 19 C -0.070 4.070 20 N -0.932 5.932 21 Si 1.112 2.888 22 H -0.289 1.289 23 H -0.276 1.276 24 H -0.281 1.281 25 C 0.170 3.830 26 C -0.114 4.114 27 C 0.098 3.902 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.144 0.856 43 H 0.129 0.871 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.018 0.982 49 H 0.254 0.746 50 H 0.010 0.990 51 H 0.041 0.959 52 H 0.068 0.932 53 H 0.081 0.919 54 H 0.082 0.918 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 -18.849 13.655 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.129 4.129 4 C -0.078 4.078 5 C -0.213 4.213 6 C -0.213 4.213 7 C 0.308 3.692 8 O -0.465 6.465 9 N -0.340 5.340 10 C -0.065 4.065 11 C -0.045 4.045 12 O -0.298 6.298 13 C 0.089 3.911 14 C -0.176 4.176 15 C 0.031 3.969 16 N -0.339 5.339 17 C -0.495 4.495 18 H 0.063 0.937 19 C -0.267 4.267 20 N -0.572 5.572 21 Si 0.936 3.064 22 H -0.215 1.215 23 H -0.202 1.202 24 H -0.208 1.208 25 C 0.044 3.956 26 C -0.154 4.154 27 C -0.026 4.026 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.161 0.839 43 H 0.147 0.853 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.028 0.972 51 H 0.060 0.940 52 H 0.086 0.914 53 H 0.099 0.901 54 H 0.100 0.900 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.346 -16.980 13.188 25.306 hybrid contribution -0.950 -0.799 0.092 1.245 sum -14.296 -17.779 13.280 26.397 Atomic orbital electron populations 1.21789 0.95953 1.02132 1.01381 1.21613 0.95814 0.94773 1.03425 1.21421 0.91844 0.98189 1.01454 1.20812 0.97375 0.89856 0.99743 1.22284 1.01841 1.02282 0.94892 1.22336 1.02558 1.01991 0.94424 1.21422 0.81155 0.92531 0.74119 1.90663 1.55873 1.48231 1.51759 1.48144 1.05841 1.07595 1.72406 1.23300 0.90849 0.91970 1.00398 1.23297 0.98711 0.84700 0.97819 1.88026 1.34386 1.14964 1.92390 1.21440 0.88189 0.88851 0.92668 1.22305 0.98096 1.01287 0.95880 1.20800 0.92317 0.87821 0.95988 1.44330 1.61042 1.21239 1.07290 1.20107 1.04413 1.22123 1.02889 0.93743 1.27154 0.90483 1.06987 1.02081 1.70916 1.23292 1.23707 1.39307 0.82898 0.75473 0.72659 0.75346 1.21504 1.20193 1.20764 1.20685 0.92857 0.97463 0.84561 1.21989 0.99233 0.94377 0.99753 1.22138 0.97043 0.84519 0.98872 0.93199 0.93599 0.91415 0.90627 0.90089 0.93015 0.93687 0.90897 0.87941 0.93144 0.92586 0.88238 0.89991 0.88924 0.83871 0.85349 0.92776 0.93074 0.90822 0.93992 0.96372 0.93649 0.97151 0.94010 0.91371 0.90080 0.89972 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.37 5.26 30.59 0.16 -1.21 16 3 C -0.09 -1.65 3.51 30.59 0.11 -1.54 16 4 C -0.07 -1.25 0.52 -52.93 -0.03 -1.27 16 5 C -0.16 -2.06 7.36 71.98 0.53 -1.53 16 6 C -0.16 -1.66 7.47 71.98 0.54 -1.12 16 7 C 0.52 13.34 6.49 87.66 0.57 13.91 16 8 O -0.59 -20.49 15.48 -3.04 -0.05 -20.54 16 9 N -0.61 -14.49 2.51 -817.40 -2.05 -16.54 16 10 C 0.06 0.92 4.07 86.35 0.35 1.27 16 11 C 0.03 0.67 6.37 72.08 0.46 1.13 16 12 O -0.38 -11.95 9.00 -148.98 -1.34 -13.29 16 13 C 0.13 4.28 0.68 -10.72 -0.01 4.27 16 14 C -0.14 -4.93 4.33 30.65 0.13 -4.80 16 15 C 0.16 6.84 6.28 86.36 0.54 7.38 16 16 N -0.61 -32.02 2.83 -698.23 -1.98 -34.00 16 17 C -0.37 -21.22 9.44 84.03 0.79 -20.43 16 18 H 0.04 2.61 7.98 -2.91 -0.02 2.59 16 19 C -0.07 -4.05 4.53 84.86 0.38 -3.67 16 20 N -0.93 -57.79 12.58 21.65 0.27 -57.52 16 21 Si 1.11 52.12 30.01 68.60 2.06 54.18 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.17 8.30 4.58 86.51 0.40 8.70 16 26 C -0.11 -4.38 5.12 30.81 0.16 -4.22 16 27 C 0.10 2.84 5.27 86.34 0.46 3.30 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.73 6.72 -2.39 -0.02 0.71 16 32 H 0.08 0.68 6.64 -2.39 -0.02 0.67 16 33 H 0.05 1.09 8.09 -2.38 -0.02 1.07 16 34 H 0.04 1.02 8.11 -2.39 -0.02 1.00 16 35 H 0.07 0.94 4.23 -2.39 -0.01 0.93 16 36 H 0.10 0.75 6.99 -2.39 -0.02 0.74 16 37 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 38 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 39 H 0.10 0.55 6.81 -2.39 -0.02 0.53 16 40 H 0.08 0.73 4.61 -2.38 -0.01 0.72 16 41 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 42 H 0.14 1.50 2.93 -2.38 -0.01 1.50 16 43 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.22 5.70 -2.38 -0.01 1.21 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 2.33 6.16 -2.39 -0.01 2.32 16 47 H 0.04 1.87 7.93 -2.39 -0.02 1.85 16 48 H 0.02 0.80 7.83 -2.39 -0.02 0.78 16 49 H 0.25 16.15 7.01 -92.71 -0.65 15.50 16 50 H 0.01 0.54 7.64 -2.39 -0.02 0.52 16 51 H 0.04 2.29 6.43 -2.39 -0.02 2.27 16 52 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 53 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 54 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 55 H 0.08 2.60 7.12 -2.39 -0.02 2.59 16 Total: -1.00 -75.27 393.30 4.15 -71.11 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.99 Total: 17.59 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.25 Total: -0.99 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.76 Total: -108.06 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.39 Total: -33.83 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.06 Total: 54.18 kcal Total: -75.27 4.15 -71.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503711745.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.117 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds