Wall clock time and date at job start Tue Mar 31 2020 23:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.53005 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47036 * 179.97438 * 5 4 3 7 7 O 1.42893 * 109.47091 * 179.97438 * 6 5 4 8 8 C 1.42897 * 113.99977 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47228 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99955 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99814 * 179.97438 * 9 8 7 12 12 C 1.47387 * 125.73633 * 180.02562 * 11 9 8 13 13 C 1.55420 * 106.73653 * 179.06413 * 12 11 9 14 14 H 1.08999 * 112.76049 * 146.41033 * 13 12 11 15 15 C 1.52900 * 106.56525 * 270.28640 * 13 12 11 16 16 C 1.51888 * 111.49521 * 169.08746 * 15 13 12 17 17 N 1.44343 * 113.47746 * 321.32684 * 16 15 13 18 18 C 1.36940 * 116.42059 * 187.48055 * 17 16 15 19 19 H 1.07999 * 119.99673 * 153.65971 * 18 17 16 20 20 C 1.38809 * 119.99891 * 333.65154 * 18 17 16 21 21 N 1.31613 * 120.00440 * 335.45095 * 20 18 17 22 22 Si 1.86801 * 119.99771 * 155.44859 * 20 18 17 23 23 H 1.48508 * 109.47263 * 94.84849 * 22 20 18 24 24 H 1.48503 * 109.47424 * 214.84767 * 22 20 18 25 25 H 1.48498 * 109.47159 * 334.84907 * 22 20 18 26 26 C 1.43975 * 127.15181 * 7.49995 * 17 16 15 27 27 C 1.49778 * 116.29840 * 2.84937 * 26 17 16 28 28 H 1.09004 * 109.25314 * 141.40848 * 27 26 17 29 29 C 1.47927 * 125.74262 * 359.69899 * 11 9 8 30 30 H 1.08993 * 109.47216 * 60.00003 * 1 2 3 31 31 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46824 * 300.00294 * 1 2 3 33 33 H 1.08995 * 109.47068 * 239.99600 * 2 1 3 34 34 H 1.09007 * 109.47037 * 119.99947 * 2 1 3 35 35 H 1.09004 * 109.47554 * 60.00153 * 3 2 1 36 36 H 1.08993 * 109.47116 * 300.00058 * 3 2 1 37 37 H 1.08995 * 109.47068 * 59.99600 * 4 3 2 38 38 H 1.09007 * 109.47037 * 299.99947 * 4 3 2 39 39 H 1.08994 * 109.47052 * 60.00113 * 5 4 3 40 40 H 1.09000 * 109.46797 * 299.99814 * 5 4 3 41 41 H 1.09007 * 109.47037 * 299.99947 * 6 5 4 42 42 H 1.09004 * 109.46824 * 59.99706 * 6 5 4 43 43 H 1.09004 * 109.47525 * 300.00098 * 8 7 6 44 44 H 1.09006 * 109.46891 * 60.00308 * 8 7 6 45 45 H 1.09004 * 110.00485 * 298.37715 * 12 11 9 46 46 H 1.08994 * 110.00620 * 59.74229 * 12 11 9 47 47 H 1.09007 * 109.04356 * 290.43902 * 15 13 12 48 48 H 1.08996 * 109.04738 * 49.31452 * 15 13 12 49 49 H 1.09001 * 108.95391 * 199.97525 * 16 15 13 50 50 H 1.08998 * 108.01382 * 82.00906 * 16 15 13 51 51 H 0.97006 * 120.00135 * 179.97438 * 21 20 18 52 52 H 1.09007 * 108.11612 * 241.07739 * 26 17 16 53 53 H 1.09003 * 108.11623 * 124.62860 * 26 17 16 54 54 H 1.09006 * 110.56650 * 274.14045 * 29 11 9 55 55 H 1.09001 * 110.56589 * 37.00008 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6101 2.8850 -0.0013 7 8 6.0864 4.2322 -0.0025 8 6 7.5109 4.3450 -0.0020 9 6 7.8995 5.8011 -0.0040 10 8 7.0411 6.6578 -0.0052 11 7 9.2010 6.1512 -0.0034 12 6 9.7216 7.5301 -0.0046 13 6 11.2719 7.4232 0.0210 14 1 11.7591 8.2257 -0.5329 15 6 11.6827 7.3961 1.4935 16 6 13.1471 7.0272 1.6561 17 7 13.5891 6.0083 0.7342 18 6 14.8520 5.5160 0.9298 19 1 15.0994 4.5177 0.6002 20 6 15.8140 6.3002 1.5513 21 7 15.7131 7.6122 1.5221 22 14 17.2518 5.4934 2.4295 23 1 18.4144 5.4167 1.5086 24 1 17.6178 6.2982 3.6227 25 1 16.8664 4.1240 2.8553 26 6 12.8486 5.4529 -0.3685 27 6 11.4938 6.0399 -0.6207 28 1 11.3282 6.1129 -1.6956 29 6 10.3473 5.2162 0.0054 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9338 0.9285 0.8892 39 1 3.7171 3.3990 0.8887 40 1 3.7163 3.3985 -0.8913 41 1 5.9734 2.3715 0.8890 42 1 5.9734 2.3707 -0.8911 43 1 7.9134 3.8624 0.8886 44 1 7.9140 3.8606 -0.8914 45 1 9.3985 8.0498 -0.9067 46 1 9.3698 8.0622 0.8791 47 1 11.4989 8.3770 1.9322 48 1 11.0792 6.6550 2.0176 49 1 13.3125 6.6748 2.6743 50 1 13.7412 7.9269 1.4960 51 1 16.3852 8.1601 1.9568 52 1 12.7272 4.3842 -0.1913 53 1 13.4446 5.5751 -1.2729 54 1 10.5952 4.9239 1.0259 55 1 10.1303 4.3385 -0.6034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566053263.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:25 Heat of formation + Delta-G solvation = -94.546571 kcal Electronic energy + Delta-G solvation = -29384.295060 eV Core-core repulsion = 25420.377527 eV Total energy + Delta-G solvation = -3963.917533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.60324 -39.97463 -38.72579 -37.27524 -36.98997 -34.30491 -33.73033 -33.15201 -32.03688 -30.28640 -29.20890 -27.97033 -27.02423 -25.07112 -24.56970 -23.65020 -23.00102 -22.13912 -21.84766 -20.44606 -19.39677 -18.92737 -18.19487 -17.69121 -17.36081 -17.04189 -16.87343 -16.51137 -16.28763 -15.81249 -15.66809 -15.36949 -15.07863 -14.88093 -14.68189 -14.53001 -14.25155 -14.07436 -13.91828 -13.82508 -13.52145 -13.38532 -13.31802 -12.94485 -12.82033 -12.77772 -12.50195 -12.47934 -12.22320 -12.21478 -12.02653 -11.79959 -11.77869 -11.70102 -11.47464 -11.46180 -11.35288 -11.28475 -11.20606 -10.90350 -10.68243 -10.48884 -9.75029 -8.63373 -7.65770 -5.34814 1.47140 1.49050 1.50652 1.59744 1.61747 2.53817 2.78494 3.25479 3.35256 3.47262 3.73711 3.78327 3.82788 3.94843 3.96142 4.09190 4.12924 4.16306 4.17621 4.24183 4.34764 4.38278 4.47040 4.47074 4.53390 4.56144 4.62447 4.64258 4.65254 4.75734 4.81313 4.88055 4.92076 4.93196 4.97884 5.05956 5.07824 5.08564 5.09558 5.20631 5.21325 5.25012 5.30218 5.35121 5.37372 5.45335 5.47486 5.52623 5.72838 5.97984 6.09267 6.42096 6.47303 7.05011 7.25331 8.09240 8.27164 9.15548 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.001684 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.808871 B =16625.693744 C =17540.371017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.117 4.117 6 C 0.055 3.945 7 O -0.399 6.399 8 C 0.053 3.947 9 C 0.524 3.476 10 O -0.577 6.577 11 N -0.614 5.614 12 C 0.117 3.883 13 C -0.078 4.078 14 H 0.094 0.906 15 C -0.111 4.111 16 C 0.165 3.835 17 N -0.597 5.597 18 C -0.281 4.281 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.173 3.827 27 C -0.095 4.095 28 H 0.097 0.903 29 C 0.111 3.889 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.054 0.946 49 H -0.010 1.010 50 H 0.045 0.955 51 H 0.248 0.752 52 H 0.029 0.971 53 H 0.011 0.989 54 H 0.073 0.927 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.371 -13.665 -4.532 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.020 4.020 7 O -0.318 6.318 8 C -0.026 4.026 9 C 0.313 3.687 10 O -0.456 6.456 11 N -0.348 5.348 12 C -0.005 4.005 13 C -0.097 4.097 14 H 0.112 0.888 15 C -0.149 4.149 16 C 0.040 3.960 17 N -0.321 5.321 18 C -0.411 4.411 19 H 0.084 0.916 20 C -0.241 4.241 21 N -0.563 5.563 22 Si 0.785 3.215 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.048 3.952 27 C -0.114 4.114 28 H 0.115 0.885 29 C -0.011 4.011 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.008 0.992 50 H 0.062 0.938 51 H 0.058 0.942 52 H 0.046 0.954 53 H 0.029 0.971 54 H 0.091 0.909 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.043 -12.963 -4.489 27.682 hybrid contribution 1.386 0.050 0.708 1.557 sum -22.658 -12.913 -3.781 26.352 Atomic orbital electron populations 1.21796 0.95823 1.01870 1.01767 1.21533 0.95981 0.96423 1.02268 1.21605 0.94972 0.97199 1.02008 1.21474 0.95696 0.94609 1.02991 1.21516 0.93091 0.98264 1.02617 1.22806 0.95544 0.81930 1.01755 1.87951 1.19448 1.28644 1.95774 1.22246 0.83412 0.91925 1.05002 1.20553 0.80538 0.91820 0.75772 1.90691 1.49811 1.53613 1.51509 1.48685 1.04882 1.08793 1.72480 1.22285 0.93073 0.83250 1.01886 1.21977 0.92909 0.98192 0.96587 0.88780 1.21576 0.96210 1.01192 0.95918 1.19984 0.92701 0.93401 0.89905 1.42899 1.13287 1.45350 1.30564 1.19449 0.88651 0.96795 1.36236 0.91557 1.25650 1.00039 0.95255 1.03140 1.70170 1.35996 1.04195 1.45930 0.85435 0.79723 0.78199 0.78140 1.21237 1.22074 1.19636 1.19353 0.90507 0.95979 0.89380 1.21561 0.93850 0.94823 1.01149 0.88519 1.22637 0.83585 0.92885 1.01971 0.92819 0.92333 0.92896 0.91719 0.91820 0.92298 0.92182 0.90944 0.91113 0.92180 0.91970 0.91765 0.91439 0.88011 0.87309 0.91126 0.91783 0.91275 0.92712 0.99183 0.93796 0.94218 0.95353 0.97069 0.90923 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.15 5.93 30.60 0.18 -0.97 16 3 C -0.12 -1.28 5.21 30.60 0.16 -1.12 16 4 C -0.11 -1.15 5.21 30.60 0.16 -0.99 16 5 C -0.12 -1.75 5.58 30.60 0.17 -1.58 16 6 C 0.06 0.86 5.94 71.98 0.43 1.29 16 7 O -0.40 -9.59 9.88 -129.94 -1.28 -10.87 16 8 C 0.05 1.06 5.43 71.24 0.39 1.45 16 9 C 0.52 14.86 7.93 87.66 0.70 15.55 16 10 O -0.58 -21.84 16.83 16.02 0.27 -21.57 16 11 N -0.61 -15.96 3.34 -808.32 -2.70 -18.66 16 12 C 0.12 3.24 6.25 87.04 0.54 3.78 16 13 C -0.08 -2.35 3.60 -9.62 -0.03 -2.38 16 14 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 15 C -0.11 -3.88 4.83 30.19 0.15 -3.73 16 16 C 0.17 7.68 5.07 86.42 0.44 8.12 16 17 N -0.60 -28.17 3.23 -721.85 -2.33 -30.51 16 18 C -0.28 -14.91 9.27 84.03 0.78 -14.13 16 19 H 0.07 3.44 7.94 -2.91 -0.02 3.41 16 20 C -0.04 -2.39 4.94 84.86 0.42 -1.97 16 21 N -0.92 -52.77 10.87 21.65 0.24 -52.53 16 22 Si 0.96 43.83 29.62 68.60 2.03 45.86 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.17 6.41 5.75 85.81 0.49 6.90 16 27 C -0.09 -2.66 2.85 -10.97 -0.03 -2.70 16 28 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 29 C 0.11 2.53 5.48 86.59 0.47 3.01 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.51 7.87 -2.38 -0.02 1.49 16 45 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 47 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.05 1.83 6.68 -2.39 -0.02 1.81 16 49 H -0.01 -0.51 8.09 -2.39 -0.02 -0.53 16 50 H 0.04 2.39 5.80 -2.39 -0.01 2.38 16 51 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 52 H 0.03 0.99 7.81 -2.38 -0.02 0.97 16 53 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 54 H 0.07 1.80 7.22 -2.38 -0.02 1.79 16 55 H 0.11 1.77 7.51 -2.39 -0.02 1.75 16 Total: -1.00 -69.88 424.00 3.16 -66.72 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.82 Total: 11.72 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.12 Total: 9.85 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.80 Total: -101.70 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.01 Total: -32.44 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.88 3.16 -66.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566053263.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.830 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds