Wall clock time and date at job start Tue Mar 31 2020 23:20:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.47074 * 2 1
4 4 C 1.52997 * 109.46767 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.47095 * 180.02562 * 4 3 2
6 6 C 1.53001 * 109.47401 * 179.97438 * 5 4 3
7 7 O 1.42894 * 109.47055 * 179.97438 * 6 5 4
8 8 C 1.42903 * 113.99853 * 180.02562 * 7 6 5
9 9 C 1.50706 * 109.47008 * 180.02562 * 8 7 6
10 10 O 1.21275 * 120.00007 * 359.97438 * 9 8 7
11 11 N 1.34778 * 119.99883 * 179.97438 * 9 8 7
12 12 C 1.46594 * 119.68017 * 0.02562 * 11 9 8
13 13 C 1.53959 * 110.57051 * 227.80271 * 12 11 9
14 14 C 1.51802 * 107.28266 * 308.73079 * 13 12 11
15 15 H 1.09005 * 109.29655 * 306.56595 * 14 13 12
16 16 C 1.55675 * 107.48713 * 65.11854 * 14 13 12
17 17 H 1.09000 * 112.48485 * 50.68553 * 16 14 13
18 18 C 1.53746 * 100.09808 * 168.92575 * 16 14 13
19 19 C 1.55284 * 101.84406 * 320.73925 * 18 16 14
20 20 N 1.45471 * 117.17164 * 181.63911 * 14 13 12
21 21 C 1.36928 * 126.40535 * 31.13583 * 20 14 13
22 22 H 1.08005 * 120.00354 * 352.77616 * 21 20 14
23 23 C 1.38808 * 120.00325 * 172.76834 * 21 20 14
24 24 N 1.31619 * 119.99606 * 5.80831 * 23 21 20
25 25 Si 1.86796 * 120.00520 * 185.80839 * 23 21 20
26 26 H 1.48495 * 109.47358 * 94.98809 * 25 23 21
27 27 H 1.48506 * 109.47418 * 214.99013 * 25 23 21
28 28 H 1.48506 * 109.46851 * 334.98745 * 25 23 21
29 29 C 1.47715 * 119.68052 * 180.02562 * 11 9 8
30 30 H 1.09004 * 109.47134 * 300.00283 * 1 2 3
31 31 H 1.08997 * 109.47241 * 59.99473 * 1 2 3
32 32 H 1.09000 * 109.47216 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.46758 * 240.00094 * 2 1 3
34 34 H 1.09002 * 109.46823 * 120.00383 * 2 1 3
35 35 H 1.08997 * 109.46866 * 60.00234 * 3 2 1
36 36 H 1.08998 * 109.46999 * 300.00276 * 3 2 1
37 37 H 1.08997 * 109.47377 * 60.00374 * 4 3 2
38 38 H 1.08998 * 109.47445 * 299.99830 * 4 3 2
39 39 H 1.09004 * 109.47338 * 59.99509 * 5 4 3
40 40 H 1.08998 * 109.46706 * 300.00124 * 5 4 3
41 41 H 1.09003 * 109.46758 * 59.99935 * 6 5 4
42 42 H 1.08997 * 109.47241 * 300.00368 * 6 5 4
43 43 H 1.08991 * 109.47213 * 59.99938 * 8 7 6
44 44 H 1.09001 * 109.46847 * 299.99656 * 8 7 6
45 45 H 1.08999 * 109.25787 * 348.08342 * 12 11 9
46 46 H 1.08998 * 109.25860 * 107.55753 * 12 11 9
47 47 H 1.09001 * 109.88216 * 68.41128 * 13 12 11
48 48 H 1.09010 * 109.88072 * 189.48679 * 13 12 11
49 49 H 1.09006 * 110.95354 * 202.60249 * 18 16 14
50 50 H 1.08998 * 110.98997 * 78.89378 * 18 16 14
51 51 H 1.09000 * 109.92646 * 263.12869 * 19 18 16
52 52 H 1.08999 * 110.08567 * 141.92343 * 19 18 16
53 53 H 0.97004 * 120.00025 * 179.97438 * 24 23 21
54 54 H 1.08994 * 110.07131 * 8.75064 * 29 11 9
55 55 H 1.09002 * 110.15662 * 247.22497 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0800 2.8849 0.0000
6 6 5.6101 2.8849 0.0000
7 8 6.0864 4.2322 0.0000
8 6 7.5109 4.3450 -0.0006
9 6 7.8995 5.8011 0.0001
10 8 7.0411 6.6578 0.0005
11 7 9.2010 6.1512 0.0002
12 6 10.2328 5.1099 -0.0009
13 6 11.3015 5.4061 1.0671
14 6 11.7639 6.8367 0.8577
15 1 12.0749 6.9667 -0.1789
16 6 10.5518 7.7680 1.1527
17 1 10.0802 7.5478 2.1104
18 6 11.2603 9.1323 1.1795
19 6 12.5884 8.7874 1.9065
20 7 12.8104 7.3322 1.7383
21 6 13.8159 6.5930 2.3018
22 1 13.8173 5.5177 2.2011
23 6 14.8336 7.2256 3.0025
24 7 14.7732 8.5217 3.2235
25 14 16.2887 6.2377 3.6316
26 1 17.3998 6.3127 2.6493
27 1 16.7396 6.7942 4.9325
28 1 15.8834 4.8206 3.8133
29 6 9.5740 7.5805 0.0015
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6766 1.9563 -0.8899
37 1 3.9329 0.9288 -0.8908
38 1 3.9337 0.9285 0.8891
39 1 3.7170 3.3983 0.8904
40 1 3.7163 3.3992 -0.8895
41 1 5.9733 2.3715 -0.8902
42 1 5.9734 2.3707 0.8897
43 1 7.9133 3.8616 -0.8907
44 1 7.9140 3.8613 0.8892
45 1 9.7707 4.1456 0.2108
46 1 10.7062 5.0739 -0.9820
47 1 10.8720 5.2932 2.0626
48 1 12.1444 4.7255 0.9468
49 1 10.6823 9.8606 1.7483
50 1 11.4514 9.4929 0.1688
51 1 12.5060 9.0306 2.9658
52 1 13.4139 9.3428 1.4614
53 1 15.4842 8.9638 3.7135
54 1 8.6894 8.1977 0.1579
55 1 10.0519 7.8448 -0.9418
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001667692488.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:20:09
Heat of formation + Delta-G solvation = -94.016690 kcal
Electronic energy + Delta-G solvation = -29493.759445 eV
Core-core repulsion = 25529.864890 eV
Total energy + Delta-G solvation = -3963.894555 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.51787 -39.89672 -38.72186 -37.03142 -36.78491 -34.57456 -33.71521 -33.01443
-31.66140 -30.26762 -29.34878 -27.95813 -26.64353 -24.84910 -24.48285 -23.73655
-22.14357 -21.88842 -21.83381 -21.28137 -20.16240 -18.70219 -18.11397 -17.58625
-17.38730 -16.90949 -16.71189 -16.57818 -16.09120 -15.93533 -15.63661 -15.30469
-15.00832 -14.88682 -14.58072 -14.39786 -14.12400 -13.99925 -13.83431 -13.63627
-13.47013 -13.31577 -13.13456 -13.08495 -12.75833 -12.69318 -12.47137 -12.45934
-12.20497 -12.09015 -11.98537 -11.78668 -11.76157 -11.68796 -11.63213 -11.50864
-11.44697 -11.34462 -10.98860 -10.73364 -10.68402 -10.64594 -9.72375 -8.84945
-7.83440 -5.17079 1.47174 1.48741 1.52958 1.57154 1.70213 2.51672
2.79528 3.36677 3.41337 3.58460 3.84185 3.88750 3.96108 3.97548
3.99831 4.10778 4.15300 4.19162 4.22714 4.24152 4.29296 4.39769
4.40782 4.48761 4.51031 4.54757 4.63882 4.66135 4.71984 4.80941
4.82437 4.83079 4.89265 4.92563 4.93755 5.03966 5.07868 5.09112
5.10533 5.22219 5.22444 5.25572 5.38096 5.46183 5.48371 5.53343
5.55191 5.55970 5.66960 5.76245 6.11019 6.21835 6.38602 7.10130
7.11610 7.80886 8.50654 9.29522
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.020420 B = 0.001740 C = 0.001642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1370.907173 B =16086.077009 C =17051.577598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.124 4.124
3 C -0.121 4.121
4 C -0.110 4.110
5 C -0.118 4.118
6 C 0.056 3.944
7 O -0.400 6.400
8 C 0.048 3.952
9 C 0.508 3.492
10 O -0.576 6.576
11 N -0.606 5.606
12 C 0.115 3.885
13 C -0.126 4.126
14 C 0.158 3.842
15 H 0.026 0.974
16 C -0.110 4.110
17 H 0.061 0.939
18 C -0.123 4.123
19 C 0.183 3.817
20 N -0.616 5.616
21 C -0.229 4.229
22 H 0.091 0.909
23 C -0.070 4.070
24 N -0.954 5.954
25 Si 0.973 3.027
26 H -0.289 1.289
27 H -0.301 1.301
28 H -0.263 1.263
29 C 0.135 3.865
30 H 0.051 0.949
31 H 0.053 0.947
32 H 0.058 0.942
33 H 0.065 0.935
34 H 0.063 0.937
35 H 0.057 0.943
36 H 0.060 0.940
37 H 0.073 0.927
38 H 0.070 0.930
39 H 0.058 0.942
40 H 0.061 0.939
41 H 0.069 0.931
42 H 0.064 0.936
43 H 0.113 0.887
44 H 0.103 0.897
45 H 0.116 0.884
46 H 0.090 0.910
47 H 0.054 0.946
48 H 0.080 0.920
49 H 0.074 0.926
50 H 0.079 0.921
51 H 0.009 0.991
52 H 0.008 0.992
53 H 0.244 0.756
54 H 0.081 0.919
55 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.400 -17.431 -10.044 29.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.162 4.162
3 C -0.158 4.158
4 C -0.147 4.147
5 C -0.156 4.156
6 C -0.020 4.020
7 O -0.319 6.319
8 C -0.031 4.031
9 C 0.296 3.704
10 O -0.456 6.456
11 N -0.340 5.340
12 C -0.007 4.007
13 C -0.165 4.165
14 C 0.051 3.949
15 H 0.044 0.956
16 C -0.131 4.131
17 H 0.080 0.920
18 C -0.161 4.161
19 C 0.058 3.942
20 N -0.340 5.340
21 C -0.358 4.358
22 H 0.108 0.892
23 C -0.263 4.263
24 N -0.604 5.604
25 Si 0.802 3.198
26 H -0.216 1.216
27 H -0.228 1.228
28 H -0.188 1.188
29 C 0.012 3.988
30 H 0.070 0.930
31 H 0.072 0.928
32 H 0.077 0.923
33 H 0.083 0.917
34 H 0.082 0.918
35 H 0.076 0.924
36 H 0.078 0.922
37 H 0.092 0.908
38 H 0.088 0.912
39 H 0.077 0.923
40 H 0.080 0.920
41 H 0.087 0.913
42 H 0.082 0.918
43 H 0.131 0.869
44 H 0.121 0.879
45 H 0.134 0.866
46 H 0.108 0.892
47 H 0.073 0.927
48 H 0.099 0.901
49 H 0.093 0.907
50 H 0.097 0.903
51 H 0.027 0.973
52 H 0.027 0.973
53 H 0.053 0.947
54 H 0.100 0.900
55 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -21.783 -16.833 -9.929 29.265
hybrid contribution 1.425 0.190 0.897 1.694
sum -20.358 -16.643 -9.033 27.803
Atomic orbital electron populations
1.21797 0.95862 1.01864 1.01753 1.21533 0.95952 0.96421 1.02280
1.21607 0.95052 0.97193 1.01974 1.21469 0.95632 0.94626 1.03001
1.21519 0.93268 0.98229 1.02546 1.22791 0.95441 0.82020 1.01764
1.87965 1.19643 1.28555 1.95766 1.22381 0.83376 0.92321 1.05041
1.20958 0.81998 0.91897 0.75499 1.90676 1.50274 1.53461 1.51141
1.48335 1.05465 1.07688 1.72516 1.21969 0.88349 0.90515 0.99847
1.21894 0.98513 0.97002 0.99052 1.20994 0.87083 0.93911 0.92930
0.95614 1.22515 0.95591 0.96870 0.98077 0.92050 1.22586 0.96029
0.96370 1.01147 1.21279 0.92589 0.84157 0.96205 1.44495 1.29630
1.04942 1.54963 1.19441 0.99076 0.90967 1.26352 0.89162 1.25655
1.01496 0.96878 1.02255 1.70182 1.34015 1.09679 1.46495 0.85123
0.79675 0.78323 0.76641 1.21643 1.22804 1.18768 1.21449 0.98085
0.81202 0.98016 0.92950 0.92809 0.92324 0.91654 0.91837 0.92397
0.92172 0.90841 0.91154 0.92347 0.91978 0.91290 0.91821 0.86926
0.87897 0.86611 0.89169 0.92677 0.90146 0.90702 0.90283 0.97302
0.97334 0.94664 0.90011 0.89608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.39 9.91 71.98 0.71 -0.68 16
2 C -0.12 -1.13 5.93 30.60 0.18 -0.95 16
3 C -0.12 -1.28 5.21 30.59 0.16 -1.12 16
4 C -0.11 -1.12 5.21 30.59 0.16 -0.96 16
5 C -0.12 -1.74 5.58 30.59 0.17 -1.57 16
6 C 0.06 0.83 5.94 71.98 0.43 1.26 16
7 O -0.40 -9.42 9.88 -129.94 -1.28 -10.70 16
8 C 0.05 0.90 4.75 71.24 0.34 1.24 16
9 C 0.51 14.08 7.75 87.66 0.68 14.76 16
10 O -0.58 -21.54 15.86 16.02 0.25 -21.28 16
11 N -0.61 -15.54 3.00 -818.11 -2.45 -17.99 16
12 C 0.12 2.32 6.21 86.69 0.54 2.86 16
13 C -0.13 -3.69 5.45 30.52 0.17 -3.52 16
14 C 0.16 5.90 2.59 45.71 0.12 6.02 16
15 H 0.03 0.98 7.94 -2.38 -0.02 0.96 16
16 C -0.11 -3.79 2.86 -9.88 -0.03 -3.82 16
17 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
18 C -0.12 -4.51 6.53 31.63 0.21 -4.30 16
19 C 0.18 9.04 5.44 86.84 0.47 9.51 16
20 N -0.62 -30.46 3.35 -668.79 -2.24 -32.70 16
21 C -0.23 -12.30 9.89 84.03 0.83 -11.47 16
22 H 0.09 4.49 7.18 -2.91 -0.02 4.47 16
23 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16
24 N -0.95 -57.61 10.48 21.65 0.23 -57.38 16
25 Si 0.97 44.98 29.56 68.60 2.03 47.01 16
26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
28 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16
29 C 0.13 3.88 5.95 85.88 0.51 4.39 16
30 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16
31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
41 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16
42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
43 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16
44 H 0.10 1.47 7.55 -2.39 -0.02 1.45 16
45 H 0.12 1.48 5.83 -2.39 -0.01 1.47 16
46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16
47 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16
48 H 0.08 2.34 7.63 -2.38 -0.02 2.32 16
49 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16
50 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16
51 H 0.01 0.49 7.46 -2.39 -0.02 0.47 16
52 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16
53 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16
54 H 0.08 2.54 6.99 -2.39 -0.02 2.53 16
55 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16
Total: -1.00 -74.50 423.20 3.46 -71.04
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: 0.82 Total: 13.81 kcal
Atomic # 6 Polarization: 2.08 SS G_CDS: 6.11 Total: 8.19 kcal
Atomic # 7 Polarization: -103.61 SS G_CDS: -4.47 Total: -108.07 kcal
Atomic # 8 Polarization: -30.95 SS G_CDS: -1.03 Total: -31.98 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -74.50 3.46 -71.04 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667692488.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.978 kcal
(2) G-P(sol) polarization free energy of solvation -74.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds