Wall clock time and date at job start Tue Mar 31 2020 23:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46956 * 2 1 4 4 C 1.52998 * 109.46976 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47011 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46991 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46751 * 179.97438 * 6 5 4 8 8 C 1.42901 * 113.99995 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47652 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99673 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00452 * 179.97438 * 9 8 7 12 12 C 1.46597 * 119.68131 * 359.97438 * 11 9 8 13 13 C 1.53957 * 110.57566 * 132.19721 * 12 11 9 14 14 C 1.51114 * 108.11724 * 50.60073 * 13 12 11 15 15 H 1.09000 * 108.30471 * 54.60562 * 14 13 12 16 16 C 1.55358 * 108.00099 * 296.46638 * 14 13 12 17 17 H 1.09000 * 111.51183 * 307.76340 * 16 14 13 18 18 C 1.53748 * 100.21707 * 189.86516 * 16 14 13 19 19 C 1.55289 * 101.84188 * 39.09132 * 18 16 14 20 20 N 1.45468 * 118.13965 * 178.74949 * 14 13 12 21 21 C 1.36938 * 126.40479 * 330.14966 * 20 14 13 22 22 H 1.07998 * 120.00052 * 7.53719 * 21 20 14 23 23 C 1.38813 * 119.99647 * 187.54164 * 21 20 14 24 24 N 1.31616 * 120.00190 * 8.10504 * 23 21 20 25 25 Si 1.86805 * 119.99876 * 188.10979 * 23 21 20 26 26 H 1.48495 * 109.47154 * 94.79957 * 25 23 21 27 27 H 1.48497 * 109.46835 * 214.80248 * 25 23 21 28 28 H 1.48501 * 109.46872 * 334.79727 * 25 23 21 29 29 C 1.47717 * 119.68588 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.47481 * 60.00129 * 1 2 3 31 31 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46977 * 300.00146 * 1 2 3 33 33 H 1.09001 * 109.46818 * 240.00613 * 2 1 3 34 34 H 1.08992 * 109.47396 * 120.00094 * 2 1 3 35 35 H 1.08995 * 109.46902 * 60.00174 * 3 2 1 36 36 H 1.09001 * 109.46920 * 300.00215 * 3 2 1 37 37 H 1.08999 * 109.47256 * 59.99671 * 4 3 2 38 38 H 1.09001 * 109.47183 * 299.99701 * 4 3 2 39 39 H 1.08999 * 109.47401 * 59.99733 * 5 4 3 40 40 H 1.09001 * 109.46881 * 299.99859 * 5 4 3 41 41 H 1.09001 * 109.46818 * 60.00587 * 6 5 4 42 42 H 1.08992 * 109.47396 * 300.00067 * 6 5 4 43 43 H 1.09003 * 109.47271 * 59.99486 * 8 7 6 44 44 H 1.09007 * 109.46600 * 300.00202 * 8 7 6 45 45 H 1.09005 * 109.25217 * 252.47341 * 12 11 9 46 46 H 1.08995 * 109.25761 * 11.94515 * 12 11 9 47 47 H 1.09001 * 109.88519 * 170.51373 * 13 12 11 48 48 H 1.08999 * 109.87923 * 291.58964 * 13 12 11 49 49 H 1.08994 * 110.95824 * 280.95382 * 18 16 14 50 50 H 1.08995 * 110.98634 * 157.24053 * 18 16 14 51 51 H 1.09004 * 109.91888 * 96.86648 * 19 18 16 52 52 H 1.08997 * 109.92237 * 218.16849 * 19 18 16 53 53 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 54 54 H 1.09004 * 110.06819 * 112.82456 * 29 11 9 55 55 H 1.08999 * 110.06801 * 351.25286 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 8 6.0862 4.2324 0.0000 8 6 7.5108 4.3453 -0.0006 9 6 7.8994 5.8013 0.0001 10 8 7.0409 6.6580 0.0005 11 7 9.2008 6.1515 0.0002 12 6 10.2327 5.1102 0.0003 13 6 11.3013 5.4074 -1.0674 14 6 11.7635 6.8346 -0.8851 15 1 12.0925 6.9587 0.1466 16 6 10.5515 7.7694 -1.1508 17 1 10.0798 7.5500 -2.1086 18 6 11.2599 9.1338 -1.1765 19 6 12.5778 8.7945 -1.9246 20 7 12.8016 7.3380 -1.7712 21 6 13.7986 6.6030 -2.3550 22 1 13.7952 5.5262 -2.2718 23 6 14.8137 7.2419 -3.0536 24 7 14.9093 8.5542 -3.0222 25 14 16.0442 6.2392 -4.0386 26 1 15.5984 6.1591 -5.4528 27 1 17.3770 6.8910 -3.9758 28 1 16.1353 4.8704 -3.4700 29 6 9.5738 7.5808 0.0003 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9330 0.9289 -0.8908 38 1 3.9337 0.9287 0.8891 39 1 3.7170 3.3984 0.8904 40 1 3.7162 3.3994 -0.8896 41 1 5.9733 2.3717 -0.8903 42 1 5.9733 2.3709 0.8897 43 1 7.9132 3.8619 -0.8908 44 1 7.9139 3.8616 0.8892 45 1 10.7057 5.0730 0.9816 46 1 9.7707 4.1463 -0.2128 47 1 12.1443 4.7268 -0.9478 48 1 10.8718 5.2955 -2.0629 49 1 11.4650 9.4856 -0.1655 50 1 10.6746 9.8671 -1.7311 51 1 12.4806 9.0461 -2.9807 52 1 13.4078 9.3463 -1.4835 53 1 15.6184 9.0008 -3.5107 54 1 10.0524 7.8424 0.9441 55 1 8.6891 8.1982 -0.1554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667692489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:12 Heat of formation + Delta-G solvation = -94.885461 kcal Electronic energy + Delta-G solvation = -29489.139463 eV Core-core repulsion = 25525.207235 eV Total energy + Delta-G solvation = -3963.932228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.52534 -39.91138 -38.72401 -37.03197 -36.79135 -34.57985 -33.71553 -33.04380 -31.68397 -30.27412 -29.35251 -27.96728 -26.65954 -24.86246 -24.49110 -23.76773 -22.14390 -21.90334 -21.83776 -21.27401 -20.14979 -18.70287 -18.11493 -17.58593 -17.39053 -16.93670 -16.70982 -16.57784 -16.09177 -15.94066 -15.64080 -15.31892 -15.01465 -14.89975 -14.59079 -14.40865 -14.12611 -14.00058 -13.83894 -13.63730 -13.48313 -13.39183 -13.13851 -12.99537 -12.75742 -12.70593 -12.50459 -12.45807 -12.20500 -12.08152 -11.98733 -11.81515 -11.76510 -11.68796 -11.63097 -11.50052 -11.44456 -11.34458 -11.02263 -10.73952 -10.69909 -10.64514 -9.72460 -8.85247 -7.83321 -5.18482 1.46585 1.48367 1.52846 1.56831 1.69933 2.51123 2.79412 3.34723 3.40917 3.57967 3.84323 3.87364 3.96132 3.97592 3.98903 4.10627 4.15031 4.19157 4.21874 4.24240 4.29093 4.39782 4.40414 4.48821 4.50939 4.54792 4.63611 4.65150 4.71798 4.80939 4.82443 4.83932 4.89304 4.91828 4.93677 5.02440 5.07128 5.09027 5.10465 5.22482 5.23373 5.25643 5.38086 5.44061 5.48388 5.53197 5.53924 5.55321 5.65135 5.75448 6.10998 6.21195 6.38432 7.08813 7.11425 7.80011 8.49734 9.28768 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.001747 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.167568 B =16020.304731 C =17016.071391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.118 4.118 6 C 0.056 3.944 7 O -0.400 6.400 8 C 0.048 3.952 9 C 0.508 3.492 10 O -0.576 6.576 11 N -0.607 5.607 12 C 0.117 3.883 13 C -0.126 4.126 14 C 0.158 3.842 15 H 0.019 0.981 16 C -0.109 4.109 17 H 0.061 0.939 18 C -0.121 4.121 19 C 0.180 3.820 20 N -0.614 5.614 21 C -0.231 4.231 22 H 0.090 0.910 23 C -0.070 4.070 24 N -0.953 5.953 25 Si 0.973 3.027 26 H -0.293 1.293 27 H -0.299 1.299 28 H -0.262 1.262 29 C 0.136 3.864 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.076 0.924 51 H -0.002 1.002 52 H 0.020 0.980 53 H 0.245 0.755 54 H 0.085 0.915 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 -17.484 9.522 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.020 4.020 7 O -0.319 6.319 8 C -0.031 4.031 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.340 5.340 12 C -0.005 4.005 13 C -0.165 4.165 14 C 0.051 3.949 15 H 0.036 0.964 16 C -0.130 4.130 17 H 0.080 0.920 18 C -0.160 4.160 19 C 0.055 3.945 20 N -0.338 5.338 21 C -0.360 4.360 22 H 0.107 0.893 23 C -0.263 4.263 24 N -0.602 5.602 25 Si 0.802 3.198 26 H -0.220 1.220 27 H -0.226 1.226 28 H -0.186 1.186 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.135 0.865 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.016 0.984 52 H 0.038 0.962 53 H 0.054 0.946 54 H 0.103 0.897 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.162 -16.883 9.429 29.412 hybrid contribution 1.339 0.180 -1.041 1.706 sum -20.823 -16.703 8.388 27.981 Atomic orbital electron populations 1.21797 0.95864 1.01864 1.01753 1.21532 0.95950 0.96423 1.02279 1.21609 0.95056 0.97190 1.01973 1.21469 0.95630 0.94631 1.03001 1.21518 0.93273 0.98223 1.02546 1.22792 0.95437 0.82017 1.01767 1.87966 1.19642 1.28553 1.95767 1.22381 0.83382 0.92313 1.05057 1.20954 0.81983 0.91905 0.75489 1.90678 1.50262 1.53461 1.51132 1.48336 1.05474 1.07694 1.72533 1.21952 0.88258 0.90556 0.99772 1.21752 0.98601 0.96923 0.99203 1.20714 0.87403 0.94021 0.92769 0.96376 1.22440 0.95545 0.96802 0.98194 0.92049 1.22571 0.95944 0.96385 1.01114 1.21293 0.93259 0.84355 0.95594 1.44464 1.29854 1.04752 1.54755 1.19433 1.00079 0.90783 1.25663 0.89261 1.25639 1.00774 0.96758 1.03088 1.70166 1.34970 1.08323 1.46737 0.85131 0.77877 0.78349 0.78461 1.22020 1.22568 1.18601 1.21437 0.98042 0.81221 0.97957 0.92948 0.92327 0.92810 0.91836 0.91656 0.92170 0.92399 0.91142 0.90854 0.91985 0.92338 0.91819 0.91283 0.87852 0.86941 0.89224 0.86496 0.90140 0.92660 0.90278 0.90560 0.98385 0.96164 0.94630 0.89662 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.13 5.93 30.60 0.18 -0.94 16 3 C -0.12 -1.27 5.21 30.60 0.16 -1.11 16 4 C -0.11 -1.12 5.21 30.59 0.16 -0.96 16 5 C -0.12 -1.73 5.58 30.59 0.17 -1.56 16 6 C 0.06 0.83 5.94 71.98 0.43 1.25 16 7 O -0.40 -9.37 9.88 -129.94 -1.28 -10.65 16 8 C 0.05 0.89 4.75 71.23 0.34 1.23 16 9 C 0.51 14.02 7.75 87.66 0.68 14.70 16 10 O -0.58 -21.44 15.86 16.01 0.25 -21.19 16 11 N -0.61 -15.50 3.00 -818.10 -2.45 -17.95 16 12 C 0.12 2.35 6.24 86.68 0.54 2.89 16 13 C -0.13 -3.69 5.43 30.30 0.16 -3.52 16 14 C 0.16 5.95 2.55 45.38 0.12 6.06 16 15 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 16 C -0.11 -3.76 2.82 -9.99 -0.03 -3.78 16 17 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.12 -4.46 6.53 31.63 0.21 -4.25 16 19 C 0.18 8.90 5.46 86.85 0.47 9.37 16 20 N -0.61 -30.46 3.35 -670.65 -2.25 -32.71 16 21 C -0.23 -12.40 9.91 84.03 0.83 -11.57 16 22 H 0.09 4.47 7.25 -2.91 -0.02 4.44 16 23 C -0.07 -3.92 5.45 84.86 0.46 -3.46 16 24 N -0.95 -57.52 10.66 21.65 0.23 -57.29 16 25 Si 0.97 45.07 29.56 68.60 2.03 47.10 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 29 C 0.14 3.90 5.99 85.88 0.51 4.42 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 1.45 7.55 -2.39 -0.02 1.43 16 44 H 0.11 1.33 7.99 -2.38 -0.02 1.31 16 45 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.12 1.48 5.84 -2.39 -0.01 1.47 16 47 H 0.08 2.34 7.72 -2.39 -0.02 2.32 16 48 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 49 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 50 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 51 H 0.00 -0.12 7.86 -2.38 -0.02 -0.14 16 52 H 0.02 1.12 7.25 -2.39 -0.02 1.11 16 53 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 54 H 0.09 2.22 8.12 -2.38 -0.02 2.20 16 55 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 Total: -1.00 -74.61 423.68 3.46 -71.16 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.82 Total: 13.44 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.11 Total: 8.10 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.47 Total: -107.95 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.03 Total: -31.85 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.61 3.46 -71.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667692489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.730 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds