Wall clock time and date at job start Tue Mar 31 2020 23:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 C 1.53002 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47122 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47302 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47566 * 180.02562 * 6 5 4 8 8 C 1.42895 * 114.00141 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46985 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00207 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.47145 * 121.01209 * 0.02562 * 11 9 8 13 13 C 1.53046 * 107.67443 * 237.42738 * 12 11 9 14 14 C 1.51146 * 111.10610 * 305.57315 * 13 12 11 15 15 H 1.09003 * 108.46583 * 174.64967 * 14 13 12 16 16 C 1.53995 * 113.17451 * 55.14190 * 14 13 12 17 17 H 1.09003 * 112.71543 * 75.20414 * 16 14 13 18 18 C 1.56012 * 100.38917 * 196.35311 * 16 14 13 19 19 C 1.54514 * 102.70223 * 36.67125 * 18 16 14 20 20 N 1.46470 * 113.21814 * 294.93961 * 14 13 12 21 21 C 1.36937 * 126.05018 * 330.44903 * 20 14 13 22 22 H 1.07997 * 120.00091 * 10.46630 * 21 20 14 23 23 C 1.38815 * 119.99737 * 190.45492 * 21 20 14 24 24 N 1.31619 * 119.99734 * 195.02963 * 23 21 20 25 25 Si 1.86799 * 120.00085 * 15.02764 * 23 21 20 26 26 H 1.48503 * 109.47299 * 174.48021 * 25 23 21 27 27 H 1.48507 * 109.46894 * 54.48149 * 25 23 21 28 28 H 1.48498 * 109.47215 * 294.48333 * 25 23 21 29 29 C 1.46530 * 121.01079 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.46817 * 60.00651 * 1 2 3 31 31 H 1.09004 * 109.46874 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47479 * 300.00323 * 1 2 3 33 33 H 1.08997 * 109.47659 * 240.00098 * 2 1 3 34 34 H 1.09004 * 109.46952 * 120.00110 * 2 1 3 35 35 H 1.09004 * 109.47078 * 59.99853 * 3 2 1 36 36 H 1.09004 * 109.47328 * 299.99880 * 3 2 1 37 37 H 1.09004 * 109.46809 * 60.00246 * 4 3 2 38 38 H 1.08990 * 109.47482 * 300.00119 * 4 3 2 39 39 H 1.08999 * 109.47511 * 60.00365 * 5 4 3 40 40 H 1.09004 * 109.47328 * 300.00437 * 5 4 3 41 41 H 1.08992 * 109.47398 * 59.99578 * 6 5 4 42 42 H 1.09007 * 109.46951 * 299.99677 * 6 5 4 43 43 H 1.08999 * 109.47531 * 59.99391 * 8 7 6 44 44 H 1.08996 * 109.47105 * 299.99103 * 8 7 6 45 45 H 1.08998 * 109.81810 * 117.88608 * 12 11 9 46 46 H 1.08997 * 109.86646 * 356.99858 * 12 11 9 47 47 H 1.09002 * 109.15391 * 185.15433 * 13 12 11 48 48 H 1.08998 * 109.15421 * 65.99101 * 13 12 11 49 49 H 1.09001 * 110.77862 * 155.14749 * 18 16 14 50 50 H 1.08994 * 110.78210 * 278.58038 * 18 16 14 51 51 H 1.09005 * 110.00726 * 218.06415 * 19 18 16 52 52 H 1.08996 * 109.80860 * 96.81938 * 19 18 16 53 53 H 0.96999 * 120.00673 * 4.10124 * 24 23 21 54 54 H 1.08994 * 109.34471 * 244.66414 * 29 11 9 55 55 H 1.09002 * 109.34434 * 4.35312 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8851 0.0013 7 8 6.0864 4.2323 0.0025 8 6 7.5108 4.3451 0.0020 9 6 7.8994 5.8012 0.0027 10 8 7.0410 6.6579 0.0040 11 7 9.2009 6.1513 0.0030 12 6 10.2606 5.1305 0.0020 13 6 11.1400 5.3724 1.2310 14 6 11.6534 6.7936 1.2617 15 1 12.1920 6.9460 2.1970 16 6 10.5307 7.8452 1.1898 17 1 9.9877 7.9462 2.1295 18 6 11.3564 9.1125 0.8074 19 6 12.4311 8.5431 -0.1456 20 7 12.5581 7.1048 0.1526 21 6 13.3807 6.2181 -0.4895 22 1 13.2806 5.1586 -0.3061 23 6 14.3431 6.6812 -1.3763 24 7 14.9277 5.8456 -2.2083 25 14 14.8083 8.4903 -1.3887 26 1 15.9427 8.7033 -2.3231 27 1 15.2086 8.9079 -0.0209 28 1 13.6436 9.2979 -1.8318 29 6 9.6037 7.5602 0.0031 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9288 0.8907 39 1 3.7164 3.3986 0.8913 40 1 3.7170 3.3992 -0.8887 41 1 5.9733 2.3716 -0.8888 42 1 5.9733 2.3708 0.8911 43 1 7.9133 3.8625 -0.8886 44 1 7.9140 3.8608 0.8914 45 1 10.8594 5.2203 -0.9044 46 1 9.8172 4.1362 0.0548 47 1 11.9870 4.6867 1.2053 48 1 10.5557 5.1837 2.1315 49 1 10.7295 9.8423 0.2950 50 1 11.8211 9.5521 1.6898 51 1 13.3843 9.0432 0.0259 52 1 12.1178 8.6812 -1.1804 53 1 14.6446 4.9185 -2.2435 54 1 10.1262 7.7864 -0.9263 55 1 8.7169 8.1892 0.0811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667692490.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:16 Heat of formation + Delta-G solvation = -87.112389 kcal Electronic energy + Delta-G solvation = -30096.476239 eV Core-core repulsion = 26132.881076 eV Total energy + Delta-G solvation = -3963.595162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.65160 -40.09252 -38.77244 -37.04322 -36.66140 -34.85736 -33.74496 -33.26457 -31.98064 -30.27246 -29.27088 -28.25587 -26.49113 -25.07884 -24.56124 -24.29350 -22.38977 -22.17536 -21.86115 -21.07952 -19.66506 -19.10745 -18.39607 -17.65625 -17.57015 -17.17484 -16.75376 -16.68705 -16.54704 -16.00510 -15.68482 -15.30974 -15.08084 -15.00168 -14.66134 -14.47610 -14.33184 -14.10350 -14.02110 -13.72511 -13.61225 -13.45494 -13.25341 -12.93546 -12.77796 -12.74203 -12.50946 -12.41403 -12.22946 -12.20402 -12.06077 -11.78686 -11.71113 -11.61320 -11.47921 -11.42163 -11.36074 -11.30135 -10.90468 -10.80523 -10.70387 -10.65396 -9.68610 -8.98452 -8.52174 -5.34330 1.44056 1.48584 1.51611 1.67472 1.72577 2.60104 2.75558 3.16667 3.31903 3.46845 3.66064 3.80439 3.90166 3.93844 3.94955 4.01692 4.10565 4.11835 4.15589 4.16965 4.22595 4.34074 4.35784 4.37373 4.45672 4.46143 4.52312 4.55705 4.61611 4.73528 4.73858 4.80484 4.85341 4.87150 4.89521 4.91914 5.04092 5.07232 5.08199 5.13924 5.16846 5.20419 5.23759 5.24372 5.27626 5.36443 5.46509 5.46667 5.51932 5.70223 6.07737 6.20690 6.38064 6.90784 7.06836 7.56317 8.21867 9.01282 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.001909 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.470293 B =14663.399140 C =15283.783107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.054 3.946 7 O -0.396 6.396 8 C 0.050 3.950 9 C 0.512 3.488 10 O -0.574 6.574 11 N -0.600 5.600 12 C 0.119 3.881 13 C -0.124 4.124 14 C 0.160 3.840 15 H 0.023 0.977 16 C -0.102 4.102 17 H 0.112 0.888 18 C -0.115 4.115 19 C 0.097 3.903 20 N -0.619 5.619 21 C -0.284 4.284 22 H 0.065 0.935 23 C -0.082 4.082 24 N -0.972 5.972 25 Si 1.101 2.899 26 H -0.322 1.322 27 H -0.289 1.289 28 H -0.259 1.259 29 C 0.127 3.873 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.023 0.977 52 H 0.031 0.969 53 H 0.248 0.752 54 H 0.053 0.947 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.971 -8.430 8.487 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.021 4.021 7 O -0.316 6.316 8 C -0.029 4.029 9 C 0.301 3.699 10 O -0.454 6.454 11 N -0.333 5.333 12 C -0.003 4.003 13 C -0.163 4.163 14 C 0.054 3.946 15 H 0.041 0.959 16 C -0.122 4.122 17 H 0.130 0.870 18 C -0.153 4.153 19 C -0.027 4.027 20 N -0.346 5.346 21 C -0.413 4.413 22 H 0.083 0.917 23 C -0.275 4.275 24 N -0.617 5.617 25 Si 0.932 3.068 26 H -0.252 1.252 27 H -0.217 1.217 28 H -0.185 1.185 29 C 0.005 3.995 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.107 0.893 51 H 0.041 0.959 52 H 0.049 0.951 53 H 0.057 0.943 54 H 0.071 0.929 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.519 -6.798 7.765 24.771 hybrid contribution -0.059 -1.402 0.283 1.432 sum -22.578 -8.201 8.049 25.333 Atomic orbital electron populations 1.21794 0.95770 1.01883 1.01788 1.21534 0.96026 0.96415 1.02254 1.21604 0.94890 0.97217 1.02044 1.21474 0.95764 0.94594 1.02951 1.21510 0.92935 0.98285 1.02667 1.22812 0.95670 0.82001 1.01657 1.87956 1.19297 1.28570 1.95737 1.22286 0.83487 0.92493 1.04667 1.20801 0.81651 0.91796 0.75627 1.90661 1.49957 1.53309 1.51427 1.48049 1.05097 1.08054 1.72119 1.21758 0.88300 0.91227 0.99043 1.21515 0.99226 0.97182 0.98369 1.20504 0.89862 0.93979 0.90271 0.95900 1.22771 0.95126 0.95679 0.98611 0.86967 1.22821 0.96082 0.96877 0.99547 1.22204 0.97185 0.85302 0.98053 1.44770 1.46711 1.04642 1.38475 1.20024 1.11906 0.89272 1.20103 0.91678 1.26720 0.96438 1.08835 0.95525 1.71002 1.47205 1.05500 1.38041 0.83452 0.75385 0.73219 0.74707 1.25152 1.21714 1.18507 1.21462 0.98174 0.81657 0.98254 0.92891 0.92320 0.92777 0.91863 0.91715 0.92107 0.92287 0.91201 0.90948 0.91851 0.92174 0.91956 0.91473 0.88431 0.87414 0.92680 0.87203 0.91834 0.89301 0.88740 0.89325 0.95949 0.95136 0.94273 0.92850 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.23 5.93 30.59 0.18 -1.05 16 3 C -0.12 -1.36 5.21 30.59 0.16 -1.20 16 4 C -0.11 -1.25 5.21 30.59 0.16 -1.10 16 5 C -0.12 -1.85 5.58 30.59 0.17 -1.68 16 6 C 0.05 0.92 5.94 71.98 0.43 1.35 16 7 O -0.40 -10.16 9.88 -129.94 -1.28 -11.45 16 8 C 0.05 1.11 4.78 71.24 0.34 1.45 16 9 C 0.51 15.74 7.79 87.66 0.68 16.43 16 10 O -0.57 -22.32 15.93 16.01 0.25 -22.07 16 11 N -0.60 -18.07 2.93 -819.51 -2.40 -20.47 16 12 C 0.12 3.40 6.26 86.27 0.54 3.94 16 13 C -0.12 -3.68 5.14 30.00 0.15 -3.53 16 14 C 0.16 5.51 2.85 44.73 0.13 5.64 16 15 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 16 C -0.10 -2.95 3.86 -9.33 -0.04 -2.98 16 17 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 18 C -0.12 -3.33 6.28 32.15 0.20 -3.13 16 19 C 0.10 3.84 3.88 86.72 0.34 4.18 16 20 N -0.62 -27.05 3.05 -674.30 -2.05 -29.10 16 21 C -0.28 -14.98 9.33 84.03 0.78 -14.19 16 22 H 0.07 3.58 6.88 -2.91 -0.02 3.56 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 24 N -0.97 -60.72 13.70 21.65 0.30 -60.42 16 25 Si 1.10 53.45 24.54 68.60 1.68 55.13 16 26 H -0.32 -16.45 7.11 99.48 0.71 -15.75 16 27 H -0.29 -13.34 6.83 99.48 0.68 -12.66 16 28 H -0.26 -11.29 5.42 99.48 0.54 -10.75 16 29 C 0.13 4.02 5.45 86.46 0.47 4.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.10 1.81 7.90 -2.39 -0.02 1.79 16 44 H 0.11 1.76 7.78 -2.39 -0.02 1.75 16 45 H 0.05 2.01 7.48 -2.39 -0.02 2.00 16 46 H 0.11 2.27 6.00 -2.39 -0.01 2.25 16 47 H 0.06 2.10 7.04 -2.39 -0.02 2.08 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.09 2.33 7.97 -2.39 -0.02 2.32 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 51 H 0.02 0.96 3.99 -2.38 -0.01 0.95 16 52 H 0.03 1.30 6.34 -2.39 -0.02 1.29 16 53 H 0.25 15.41 8.73 -92.71 -0.81 14.60 16 54 H 0.05 1.92 6.82 -2.39 -0.02 1.91 16 55 H 0.08 2.66 7.00 -2.39 -0.02 2.64 16 Total: -1.00 -72.61 410.63 2.98 -69.64 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.60 Total: 15.12 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.88 Total: 3.63 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.16 Total: -110.00 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.03 Total: -33.51 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 1.68 Total: 55.13 kcal Total: -72.61 2.98 -69.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667692490.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.476 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds