Wall clock time and date at job start Tue Mar 31 2020 23:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46888 * 2 1 4 4 C 1.52991 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47382 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47473 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47163 * 180.02562 * 6 5 4 8 8 C 1.42899 * 113.99617 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46880 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99779 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00176 * 180.02562 * 9 8 7 12 12 C 1.46944 * 120.44301 * 359.97438 * 11 9 8 13 13 C 1.53589 * 108.54777 * 125.78536 * 12 11 9 14 14 H 1.09002 * 110.59968 * 172.74196 * 13 12 11 15 15 C 1.53376 * 108.68663 * 294.33157 * 13 12 11 16 16 C 1.53008 * 109.25434 * 60.26120 * 15 13 12 17 17 C 1.53003 * 109.79647 * 60.58497 * 16 15 13 18 18 C 1.53372 * 109.27154 * 299.42955 * 17 16 15 19 19 H 1.08994 * 110.59812 * 178.11175 * 18 17 16 20 20 C 1.46953 * 120.44258 * 180.02562 * 11 9 8 21 21 N 1.47565 * 107.77049 * 51.10986 * 13 12 11 22 22 C 1.36941 * 121.60934 * 120.52540 * 21 13 12 23 23 H 1.07996 * 119.99840 * 26.84002 * 22 21 13 24 24 C 1.38817 * 119.99724 * 206.84045 * 22 21 13 25 25 N 1.31616 * 120.00392 * 18.53379 * 24 22 21 26 26 Si 1.86798 * 119.99678 * 198.53680 * 24 22 21 27 27 H 1.48503 * 109.47405 * 59.99613 * 26 24 22 28 28 H 1.48496 * 109.47161 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47162 * 299.99854 * 26 24 22 30 30 H 1.09005 * 109.46921 * 299.99238 * 1 2 3 31 31 H 1.09000 * 109.47472 * 59.99949 * 1 2 3 32 32 H 1.09007 * 109.46890 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46826 * 240.00381 * 2 1 3 34 34 H 1.09000 * 109.47472 * 120.00051 * 2 1 3 35 35 H 1.09002 * 109.46474 * 60.00160 * 3 2 1 36 36 H 1.09000 * 109.47106 * 300.00275 * 3 2 1 37 37 H 1.09002 * 109.47388 * 59.99815 * 4 3 2 38 38 H 1.09000 * 109.47236 * 300.00063 * 4 3 2 39 39 H 1.09011 * 109.46849 * 60.00193 * 5 4 3 40 40 H 1.09005 * 109.47374 * 300.00593 * 5 4 3 41 41 H 1.08997 * 109.46606 * 60.00361 * 6 5 4 42 42 H 1.09000 * 109.47345 * 300.00243 * 6 5 4 43 43 H 1.09000 * 109.46992 * 60.00596 * 8 7 6 44 44 H 1.08996 * 109.47610 * 299.99899 * 8 7 6 45 45 H 1.08994 * 109.62539 * 245.50215 * 12 11 9 46 46 H 1.09001 * 109.62417 * 6.06599 * 12 11 9 47 47 H 1.08998 * 109.51021 * 180.19987 * 15 13 12 48 48 H 1.09006 * 109.50444 * 300.28293 * 15 13 12 49 49 H 1.09004 * 109.41699 * 180.68474 * 16 15 13 50 50 H 1.09002 * 109.41653 * 300.55045 * 16 15 13 51 51 H 1.09000 * 109.50577 * 179.49299 * 17 16 15 52 52 H 1.08998 * 109.50739 * 59.36481 * 17 16 15 53 53 H 1.08995 * 109.62521 * 114.51799 * 20 11 9 54 54 H 1.09004 * 109.78554 * 354.03414 * 20 11 9 55 55 H 0.96995 * 119.99934 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0013 7 8 6.0862 4.2326 -0.0013 8 6 7.5107 4.3454 -0.0019 9 6 7.8992 5.8014 -0.0012 10 8 7.0407 6.6581 0.0002 11 7 9.2007 6.1516 -0.0021 12 6 10.2488 5.1218 -0.0032 13 6 11.1932 5.3870 -1.1851 14 1 12.0550 4.7209 -1.1443 15 6 10.4151 5.1833 -2.4910 16 6 9.2411 6.1635 -2.5371 17 6 9.7638 7.6007 -2.4894 18 6 10.5397 7.8141 -1.1838 19 1 10.9506 8.8227 -1.1424 20 6 9.5905 7.5685 -0.0009 21 7 11.6106 6.8009 -1.1194 22 6 12.9283 7.1556 -1.0047 23 1 13.6989 6.4991 -1.3808 24 6 13.2734 8.3590 -0.4050 25 7 12.4079 8.9820 0.3664 26 14 14.9663 9.0942 -0.6928 27 1 15.1552 9.3492 -2.1435 28 1 15.0841 10.3727 0.0534 29 1 16.0054 8.1456 -0.2176 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8901 36 1 1.6766 1.9564 -0.8900 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9287 0.8891 39 1 3.7169 3.3992 0.8888 40 1 3.7161 3.3988 -0.8912 41 1 5.9731 2.3710 -0.8911 42 1 5.9733 2.3718 0.8889 43 1 7.9130 3.8620 -0.8922 44 1 7.9139 3.8617 0.8878 45 1 10.8090 5.1686 0.9306 46 1 9.7943 4.1370 -0.1116 47 1 11.0745 5.3650 -3.3397 48 1 10.0388 4.1612 -2.5348 49 1 8.6791 6.0127 -3.4588 50 1 8.5885 5.9877 -1.6819 51 1 8.9244 8.2948 -2.5316 52 1 10.4248 7.7759 -3.3383 53 1 10.0993 7.8074 0.9330 54 1 8.7046 8.1950 -0.1059 55 1 12.6490 9.8230 0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671028853.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:20 Heat of formation + Delta-G solvation = -70.246868 kcal Electronic energy + Delta-G solvation = -30974.949653 eV Core-core repulsion = 27012.085835 eV Total energy + Delta-G solvation = -3962.863818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.10144 -39.60522 -38.55670 -36.99437 -35.63245 -34.53201 -33.77622 -33.45712 -32.17583 -30.11979 -28.81761 -27.80482 -26.82375 -25.26624 -24.58190 -23.21106 -22.81420 -22.12396 -21.83021 -20.89819 -19.98026 -18.71435 -17.98552 -17.46274 -17.41577 -16.68049 -16.64335 -16.43499 -16.06578 -15.69724 -15.36228 -15.12524 -15.11688 -14.61156 -14.49815 -14.43266 -14.12830 -14.00357 -13.86128 -13.72624 -13.52856 -13.39972 -13.05310 -12.84051 -12.75158 -12.58366 -12.45670 -12.40944 -12.20618 -12.18631 -11.89860 -11.75526 -11.72278 -11.70459 -11.67238 -11.44011 -11.33249 -11.22188 -11.02378 -10.67688 -10.62895 -10.53973 -9.41734 -8.45527 -7.82626 -5.24448 1.49035 1.52732 1.57542 1.58085 1.79455 2.53869 2.86276 3.31957 3.50831 3.56853 3.96892 3.98797 4.08596 4.13693 4.16032 4.19071 4.20364 4.23409 4.25609 4.27892 4.39770 4.41790 4.50021 4.51347 4.56007 4.65386 4.65877 4.78164 4.83803 4.85350 4.90024 4.90509 4.94980 4.98221 5.08599 5.10117 5.11237 5.17169 5.22691 5.23627 5.26588 5.32117 5.39284 5.43212 5.48613 5.49531 5.54465 5.66391 5.68157 5.81697 6.15895 6.40839 6.55762 7.15720 7.19410 7.86068 8.44298 9.22505 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.002023 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.947661 B =13837.214955 C =13971.687311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.118 4.118 6 C 0.054 3.946 7 O -0.398 6.398 8 C 0.051 3.949 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.590 5.590 12 C 0.095 3.905 13 C 0.143 3.857 14 H 0.092 0.908 15 C -0.114 4.114 16 C -0.137 4.137 17 C -0.125 4.125 18 C 0.180 3.820 19 H 0.075 0.925 20 C 0.125 3.875 21 N -0.593 5.593 22 C -0.253 4.253 23 H 0.070 0.930 24 C -0.044 4.044 25 N -0.924 5.924 26 Si 0.959 3.041 27 H -0.286 1.286 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.118 0.882 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.041 0.959 52 H 0.044 0.956 53 H 0.051 0.949 54 H 0.056 0.944 55 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -20.106 -1.680 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.021 4.021 7 O -0.317 6.317 8 C -0.028 4.028 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.323 5.323 12 C -0.028 4.028 13 C 0.036 3.964 14 H 0.110 0.890 15 C -0.153 4.153 16 C -0.175 4.175 17 C -0.164 4.164 18 C 0.073 3.927 19 H 0.093 0.907 20 C 0.001 3.999 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.240 4.240 25 N -0.570 5.570 26 Si 0.788 3.212 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.136 0.864 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.099 0.901 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.070 0.930 54 H 0.075 0.925 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.436 -19.370 -1.574 24.818 hybrid contribution 1.228 1.279 0.086 1.775 sum -14.208 -18.091 -1.488 23.051 Atomic orbital electron populations 1.21799 0.95858 1.01879 1.01731 1.21529 0.95947 0.96341 1.02320 1.21610 0.95042 0.97260 1.01941 1.21464 0.95629 0.94483 1.03060 1.21522 0.93187 0.98344 1.02492 1.22819 0.95494 0.81991 1.01830 1.87977 1.19340 1.28667 1.95751 1.22353 0.83512 0.92010 1.04922 1.20728 0.81790 0.92078 0.75611 1.90672 1.50152 1.53558 1.51883 1.48215 1.05216 1.08025 1.70865 1.22528 0.89520 0.90700 1.00101 1.21513 0.95621 0.86423 0.92807 0.89023 1.21913 0.96547 0.98982 0.97885 1.22080 0.98766 0.94707 1.01975 1.21963 0.98177 0.97605 0.98704 1.20867 0.86839 0.94789 0.90232 0.90694 1.21792 0.97014 0.80718 1.00374 1.44504 1.01969 1.00216 1.84747 1.19384 0.83977 1.04258 1.30727 0.91222 1.25584 1.00300 1.00824 0.97305 1.70102 1.36682 1.17914 1.32252 0.85475 0.81161 0.77361 0.77160 1.21262 1.22718 1.20184 0.92911 0.92904 0.92260 0.91685 0.91706 0.92343 0.92318 0.90895 0.90948 0.92276 0.92192 0.91392 0.91553 0.87415 0.87655 0.92320 0.86444 0.93244 0.89289 0.93430 0.90091 0.94068 0.93725 0.93013 0.92540 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.26 5.93 30.60 0.18 -1.08 16 3 C -0.12 -1.45 5.21 30.59 0.16 -1.29 16 4 C -0.11 -1.29 5.21 30.59 0.16 -1.13 16 5 C -0.12 -2.01 5.58 30.59 0.17 -1.84 16 6 C 0.05 0.97 5.94 71.98 0.43 1.39 16 7 O -0.40 -11.00 9.88 -129.94 -1.28 -12.28 16 8 C 0.05 1.25 4.73 71.24 0.34 1.59 16 9 C 0.51 18.08 5.10 87.66 0.45 18.53 16 10 O -0.58 -26.30 15.90 15.99 0.25 -26.05 16 11 N -0.59 -21.54 1.65 -817.15 -1.34 -22.88 16 12 C 0.10 2.89 5.79 86.49 0.50 3.39 16 13 C 0.14 4.93 3.61 45.11 0.16 5.09 16 14 H 0.09 2.95 8.03 -2.39 -0.02 2.93 16 15 C -0.11 -3.43 5.58 30.72 0.17 -3.25 16 16 C -0.14 -4.70 5.55 30.60 0.17 -4.53 16 17 C -0.13 -5.12 5.58 30.72 0.17 -4.95 16 18 C 0.18 8.38 2.63 45.13 0.12 8.50 16 19 H 0.08 4.08 5.93 -2.39 -0.01 4.07 16 20 C 0.13 5.63 5.83 86.51 0.50 6.14 16 21 N -0.59 -26.92 2.54 -645.57 -1.64 -28.56 16 22 C -0.25 -12.88 9.73 84.03 0.82 -12.07 16 23 H 0.07 3.43 7.90 -2.91 -0.02 3.41 16 24 C -0.04 -2.33 4.98 84.86 0.42 -1.91 16 25 N -0.92 -51.67 10.73 21.65 0.23 -51.44 16 26 Si 0.96 43.51 29.59 68.60 2.03 45.54 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 29 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 1.99 7.68 -2.39 -0.02 1.97 16 44 H 0.11 1.96 7.93 -2.39 -0.02 1.94 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.12 2.34 5.90 -2.39 -0.01 2.33 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 50 H 0.08 2.85 2.48 -3.50 -0.01 2.84 16 51 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.05 2.63 7.75 -2.39 -0.02 2.62 16 54 H 0.06 2.66 7.00 -2.38 -0.02 2.65 16 55 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -67.62 412.13 4.72 -62.90 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.83 Total: 21.02 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.64 Total: 11.75 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -2.75 Total: -102.88 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.03 Total: -38.33 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.62 4.72 -62.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671028853.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.346 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds