Wall clock time and date at job start Tue Mar 31 2020 22:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53002 * 109.46918 * 2 1
4 4 C 1.53002 * 109.46918 * 180.02562 * 3 2 1
5 5 C 1.53002 * 109.46918 * 179.97438 * 4 3 2
6 6 C 1.52999 * 109.47069 * 179.97438 * 5 4 3
7 7 H 1.09000 * 109.47486 * 305.00460 * 6 5 4
8 8 C 1.53006 * 109.46623 * 65.00288 * 6 5 4
9 9 C 1.52997 * 109.47269 * 185.00124 * 6 5 4
10 10 C 1.50692 * 109.47279 * 175.00370 * 9 6 5
11 11 O 1.21281 * 120.00029 * 359.97438 * 10 9 6
12 12 N 1.34777 * 120.00142 * 179.97438 * 10 9 6
13 13 C 1.46501 * 120.00247 * 179.97438 * 12 10 9
14 14 H 1.09000 * 110.97639 * 322.30229 * 13 12 10
15 15 C 1.55013 * 111.10796 * 86.45635 * 13 12 10
16 16 O 1.43858 * 105.17271 * 154.03328 * 15 13 12
17 17 C 1.42530 * 109.63106 * 335.69461 * 16 15 13
18 18 C 1.53264 * 115.54824 * 231.51472 * 17 16 15
19 19 N 1.47712 * 85.91371 * 219.83586 * 18 17 16
20 20 C 1.36937 * 134.43655 * 204.13702 * 19 18 17
21 21 H 1.07997 * 119.99901 * 180.02562 * 20 19 18
22 22 C 1.38809 * 119.99614 * 0.02562 * 20 19 18
23 23 N 1.31615 * 120.00552 * 0.02562 * 22 20 19
24 24 Si 1.86809 * 119.99768 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47021 * 59.99975 * 24 22 20
26 26 H 1.48499 * 109.47172 * 180.02562 * 24 22 20
27 27 H 1.48498 * 109.46892 * 300.00366 * 24 22 20
28 28 C 1.47707 * 91.12494 * 24.15350 * 19 18 17
29 29 C 1.53775 * 108.37573 * 1.86313 * 17 16 15
30 30 H 1.09000 * 109.47089 * 299.99764 * 1 2 3
31 31 H 1.08998 * 109.47000 * 60.00373 * 1 2 3
32 32 H 1.09000 * 109.47173 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47089 * 240.00236 * 2 1 3
34 34 H 1.08994 * 109.47265 * 120.00057 * 2 1 3
35 35 H 1.09000 * 109.47048 * 60.00211 * 3 2 1
36 36 H 1.08994 * 109.47199 * 300.00098 * 3 2 1
37 37 H 1.09000 * 109.47089 * 60.00236 * 4 3 2
38 38 H 1.08994 * 109.47265 * 300.00057 * 4 3 2
39 39 H 1.09000 * 109.47048 * 60.00211 * 5 4 3
40 40 H 1.08994 * 109.47199 * 300.00098 * 5 4 3
41 41 H 1.09001 * 109.47002 * 179.97438 * 8 6 5
42 42 H 1.08993 * 109.46955 * 300.00075 * 8 6 5
43 43 H 1.09000 * 109.47050 * 59.99904 * 8 6 5
44 44 H 1.09006 * 109.47396 * 295.00785 * 9 6 5
45 45 H 1.09001 * 109.46992 * 54.99944 * 9 6 5
46 46 H 0.97000 * 120.00229 * 359.97438 * 12 10 9
47 47 H 1.09003 * 110.30224 * 272.95501 * 15 13 12
48 48 H 1.08997 * 110.30440 * 35.10459 * 15 13 12
49 49 H 1.09004 * 113.80025 * 334.08474 * 18 17 16
50 50 H 1.08990 * 113.80208 * 105.58333 * 18 17 16
51 51 H 0.96997 * 120.00398 * 180.02562 * 23 22 20
52 52 H 1.09000 * 113.80022 * 221.59463 * 28 19 18
53 53 H 1.09009 * 113.90914 * 90.11132 * 28 19 18
54 54 H 1.08994 * 110.92235 * 262.78654 * 29 17 16
55 55 H 1.09002 * 110.91883 * 139.14222 * 29 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0800 2.8851 -0.0013
6 6 5.6099 2.8851 -0.0013
7 1 5.9734 2.2960 0.8407
8 6 6.1199 2.2749 -1.3085
9 6 6.1199 4.3221 0.1238
10 6 7.6218 4.3132 0.2472
11 8 8.2249 3.2611 0.2367
12 7 8.2948 5.4745 0.3693
13 6 9.7548 5.4659 0.4899
14 1 10.0914 4.6242 1.0953
15 6 10.4301 5.4553 -0.9054
16 8 11.7215 6.0560 -0.7032
17 6 11.6824 6.9008 0.4441
18 6 12.2023 8.3270 0.2329
19 7 12.8177 8.1874 1.5684
20 6 13.2151 9.0691 2.5378
21 1 13.6518 8.7025 3.4550
22 6 13.0566 10.4341 2.3416
23 7 12.5240 10.8809 1.2240
24 14 13.5994 11.6370 3.6637
25 1 15.0548 11.4767 3.9114
26 1 13.3233 13.0250 3.2137
27 1 12.8512 11.3654 4.9173
28 6 12.8332 6.7160 1.4395
29 6 10.2773 6.8133 1.0629
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.6766 1.9563 0.8900
36 1 1.6766 1.9563 -0.8899
37 1 3.9330 0.9289 -0.8909
38 1 3.9337 0.9286 0.8890
39 1 3.7170 3.3991 0.8887
40 1 3.7162 3.3986 -0.8912
41 1 7.2099 2.2753 -1.3088
42 1 5.7565 1.2512 -1.3976
43 1 5.7564 2.8640 -2.1505
44 1 5.8315 4.8885 -0.7618
45 1 5.6853 4.7861 1.0092
46 1 7.8125 6.3161 0.3774
47 1 10.5410 4.4320 -1.2641
48 1 9.8458 6.0437 -1.6128
49 1 12.9256 8.4160 -0.5777
50 1 11.4154 9.0798 0.1876
51 1 12.4136 11.8347 1.0868
52 1 12.5466 6.1916 2.3510
53 1 13.7446 6.3215 0.9900
54 1 9.6542 7.6444 0.7328
55 1 10.3327 6.7782 2.1509
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001673569345.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:09
Heat of formation + Delta-G solvation = -80.237080 kcal
Electronic energy + Delta-G solvation = -29328.249604 eV
Core-core repulsion = 25364.952577 eV
Total energy + Delta-G solvation = -3963.297026 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-41.63220 -40.60108 -38.19588 -37.72824 -35.85563 -35.47748 -34.13978 -32.20166
-31.38894 -29.95793 -28.46495 -27.31931 -27.18159 -26.78190 -23.98508 -23.78064
-22.59995 -21.83590 -21.50442 -20.62244 -20.36375 -18.79422 -18.18339 -17.65094
-17.03424 -16.71873 -16.65988 -16.40972 -16.33503 -15.63220 -15.59163 -15.23966
-15.12129 -14.69574 -14.59160 -14.26373 -14.22260 -14.12439 -13.85655 -13.58136
-13.34042 -13.20012 -12.85230 -12.84009 -12.77336 -12.66162 -12.56152 -12.52738
-12.36826 -12.23241 -11.99707 -11.96074 -11.83628 -11.78858 -11.57342 -11.48963
-11.45394 -11.31032 -11.18866 -10.88328 -10.63399 -10.37570 -10.05762 -8.97874
-7.91855 -5.26715 1.47171 1.50516 1.56637 1.67710 2.08630 2.44497
2.89162 3.23293 3.38057 3.46877 3.65893 3.70383 3.77308 3.81675
3.99812 4.03242 4.08132 4.15246 4.21434 4.24057 4.43960 4.47380
4.63663 4.67184 4.70007 4.72085 4.75627 4.77608 4.79300 4.81005
4.86948 4.88792 4.93618 4.97534 5.00076 5.02597 5.06438 5.12203
5.13372 5.20869 5.24241 5.25911 5.29619 5.38848 5.41683 5.47208
5.49907 5.51352 5.62080 5.65731 5.86914 6.17091 6.57709 6.89125
7.29486 7.57400 8.51930 9.25150
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.023663 B = 0.001657 C = 0.001590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1182.988787 B =16898.993861 C =17602.902696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.128 4.128
3 C -0.117 4.117
4 C -0.121 4.121
5 C -0.108 4.108
6 C -0.073 4.073
7 H 0.057 0.943
8 C -0.152 4.152
9 C -0.131 4.131
10 C 0.510 3.490
11 O -0.574 6.574
12 N -0.710 5.710
13 C 0.127 3.873
14 H 0.092 0.908
15 C 0.042 3.958
16 O -0.382 6.382
17 C 0.077 3.923
18 C 0.161 3.839
19 N -0.627 5.627
20 C -0.238 4.238
21 H 0.086 0.914
22 C -0.061 4.061
23 N -0.951 5.951
24 Si 0.981 3.019
25 H -0.281 1.281
26 H -0.293 1.293
27 H -0.272 1.272
28 C 0.114 3.886
29 C -0.108 4.108
30 H 0.054 0.946
31 H 0.055 0.945
32 H 0.054 0.946
33 H 0.058 0.942
34 H 0.057 0.943
35 H 0.062 0.938
36 H 0.063 0.937
37 H 0.060 0.940
38 H 0.053 0.947
39 H 0.070 0.930
40 H 0.072 0.928
41 H 0.046 0.954
42 H 0.055 0.945
43 H 0.058 0.942
44 H 0.117 0.883
45 H 0.116 0.884
46 H 0.417 0.583
47 H 0.088 0.912
48 H 0.072 0.928
49 H 0.009 0.991
50 H 0.057 0.943
51 H 0.250 0.750
52 H 0.066 0.934
53 H 0.040 0.960
54 H 0.091 0.909
55 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.412 -17.388 -3.798 30.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.166 4.166
3 C -0.154 4.154
4 C -0.158 4.158
5 C -0.145 4.145
6 C -0.092 4.092
7 H 0.076 0.924
8 C -0.209 4.209
9 C -0.171 4.171
10 C 0.299 3.701
11 O -0.453 6.453
12 N -0.363 5.363
13 C 0.021 3.979
14 H 0.110 0.890
15 C -0.036 4.036
16 O -0.300 6.300
17 C 0.036 3.964
18 C 0.036 3.964
19 N -0.355 5.355
20 C -0.366 4.366
21 H 0.104 0.896
22 C -0.254 4.254
23 N -0.600 5.600
24 Si 0.809 3.191
25 H -0.207 1.207
26 H -0.219 1.219
27 H -0.198 1.198
28 C -0.011 4.011
29 C -0.146 4.146
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.081 0.919
36 H 0.082 0.918
37 H 0.079 0.921
38 H 0.072 0.928
39 H 0.089 0.911
40 H 0.091 0.909
41 H 0.065 0.935
42 H 0.074 0.926
43 H 0.077 0.923
44 H 0.135 0.865
45 H 0.134 0.866
46 H 0.255 0.745
47 H 0.106 0.894
48 H 0.090 0.910
49 H 0.027 0.973
50 H 0.075 0.925
51 H 0.059 0.941
52 H 0.084 0.916
53 H 0.058 0.942
54 H 0.109 0.891
55 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -23.763 -17.876 -3.797 29.978
hybrid contribution 0.704 1.253 0.485 1.517
sum -23.059 -16.624 -3.312 28.619
Atomic orbital electron populations
1.21782 0.95603 1.01757 1.01916 1.21556 0.96131 0.97103 1.01764
1.21599 0.95029 0.96645 1.02168 1.21633 0.95477 0.96944 1.01788
1.21604 0.93020 0.97053 1.02871 1.20858 0.95668 0.94155 0.98532
0.92422 1.21949 1.01241 1.00791 0.96885 1.21835 0.88832 0.99979
1.06438 1.21430 0.91587 0.82751 0.74315 1.90676 1.71488 1.32184
1.50977 1.45856 1.05795 1.10107 1.74557 1.22394 0.81408 0.98023
0.96103 0.88974 1.23845 0.84087 0.98586 0.97053 1.88370 1.32214
1.62385 1.46987 1.23744 0.95853 0.90915 0.85860 1.22399 0.94670
0.92867 0.86494 1.45949 1.72625 1.01405 1.15524 1.19350 1.34343
0.87205 0.95675 0.89603 1.25622 1.01847 0.98199 0.99748 1.69992
1.50281 1.13061 1.26624 0.85122 0.78088 0.77523 0.78384 1.20672
1.21907 1.19814 1.22956 0.95929 0.85653 0.96584 1.22725 0.93412
0.96695 1.01730 0.92671 0.92599 0.92663 0.92291 0.92419 0.91929
0.91780 0.92103 0.92773 0.91089 0.90924 0.93477 0.92610 0.92321
0.86521 0.86560 0.74528 0.89372 0.90965 0.97328 0.92518 0.94066
0.91565 0.94240 0.89057 0.89402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16
2 C -0.13 -1.27 5.93 30.60 0.18 -1.09 16
3 C -0.12 -1.13 5.21 30.60 0.16 -0.97 16
4 C -0.12 -1.35 4.97 30.60 0.15 -1.19 16
5 C -0.11 -1.10 4.68 30.59 0.14 -0.96 16
6 C -0.07 -1.06 2.04 -10.79 -0.02 -1.08 16
7 H 0.06 1.08 7.95 -2.39 -0.02 1.06 16
8 C -0.15 -2.55 8.69 71.98 0.63 -1.93 16
9 C -0.13 -1.63 5.17 29.84 0.15 -1.48 16
10 C 0.51 10.51 7.54 87.65 0.66 11.17 16
11 O -0.57 -16.56 13.72 -3.03 -0.04 -16.60 16
12 N -0.71 -13.85 5.24 -435.30 -2.28 -16.13 16
13 C 0.13 3.33 3.37 46.53 0.16 3.49 16
14 H 0.09 2.67 7.74 -2.39 -0.02 2.65 16
15 C 0.04 1.20 7.49 72.67 0.54 1.75 16
16 O -0.38 -14.16 11.14 -148.98 -1.66 -15.82 16
17 C 0.08 3.01 1.68 -10.31 -0.02 3.00 16
18 C 0.16 7.96 7.01 86.23 0.60 8.57 16
19 N -0.63 -32.58 3.67 -732.86 -2.69 -35.27 16
20 C -0.24 -13.30 10.70 84.03 0.90 -12.40 16
21 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16
22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16
23 N -0.95 -56.55 11.39 21.65 0.25 -56.31 16
24 Si 0.98 44.97 29.55 68.60 2.03 47.00 16
25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16
26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
28 C 0.11 4.87 8.37 86.24 0.72 5.59 16
29 C -0.11 -3.34 5.96 31.70 0.19 -3.15 16
30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16
32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16
33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.06 0.73 6.57 -2.39 -0.02 0.71 16
38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
39 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16
40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
41 H 0.05 1.07 5.95 -2.39 -0.01 1.06 16
42 H 0.05 0.89 6.56 -2.39 -0.02 0.87 16
43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
44 H 0.12 0.97 8.14 -2.38 -0.02 0.96 16
45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16
46 H 0.42 5.86 8.51 -92.71 -0.79 5.07 16
47 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
49 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.06 2.99 7.05 -2.39 -0.02 2.97 16
51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16
52 H 0.07 2.56 7.98 -2.39 -0.02 2.54 16
53 H 0.04 1.71 8.14 -2.38 -0.02 1.70 16
54 H 0.09 2.70 7.85 -2.39 -0.02 2.69 16
55 H 0.09 2.81 7.83 -2.39 -0.02 2.80 16
Total: -1.00 -69.86 428.82 1.99 -67.88
By element:
Atomic # 1 Polarization: 19.48 SS G_CDS: 0.05 Total: 19.53 kcal
Atomic # 6 Polarization: -0.61 SS G_CDS: 6.33 Total: 5.72 kcal
Atomic # 7 Polarization: -102.99 SS G_CDS: -4.72 Total: -107.71 kcal
Atomic # 8 Polarization: -30.72 SS G_CDS: -1.70 Total: -32.42 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -69.86 1.99 -67.88 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001673569345.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.361 kcal
(2) G-P(sol) polarization free energy of solvation -69.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds