Wall clock time and date at job start Tue Mar 31 2020 23:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 C 1.53001 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47122 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47122 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.46920 * 179.97438 * 6 5 4 8 8 C 1.42906 * 113.99766 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47186 * 180.02562 * 8 7 6 10 10 O 1.21287 * 120.00132 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00210 * 180.02562 * 9 8 7 12 12 C 1.46892 * 120.47131 * 179.97438 * 11 9 8 13 13 C 1.53338 * 108.75749 * 124.42926 * 12 11 9 14 14 C 1.52671 * 109.11612 * 52.41277 * 13 12 11 15 15 C 1.53506 * 113.56917 * 73.83948 * 14 13 12 16 16 N 1.47663 * 85.98278 * 91.01150 * 15 14 13 17 17 C 1.36932 * 134.45859 * 204.29890 * 16 15 14 18 18 H 1.08002 * 119.99876 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00272 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47336 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46937 * 120.00007 * 21 19 17 24 24 H 1.48504 * 109.47577 * 240.00066 * 21 19 17 25 25 C 1.47666 * 91.08413 * 24.31134 * 16 15 14 26 26 C 1.52672 * 113.18779 * 302.42319 * 14 13 12 27 27 C 1.46879 * 120.46877 * 359.97438 * 11 9 8 28 28 H 1.08994 * 109.47178 * 60.00487 * 1 2 3 29 29 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47278 * 299.99909 * 1 2 3 31 31 H 1.08995 * 109.47250 * 239.99334 * 2 1 3 32 32 H 1.09007 * 109.46851 * 119.99719 * 2 1 3 33 33 H 1.08999 * 109.46970 * 59.99902 * 3 2 1 34 34 H 1.09002 * 109.46880 * 300.00090 * 3 2 1 35 35 H 1.08995 * 109.47250 * 59.99334 * 4 3 2 36 36 H 1.09007 * 109.46851 * 299.99719 * 4 3 2 37 37 H 1.09002 * 109.47242 * 59.99458 * 5 4 3 38 38 H 1.09002 * 109.46880 * 300.00090 * 5 4 3 39 39 H 1.08999 * 109.47278 * 60.00091 * 6 5 4 40 40 H 1.09007 * 109.46851 * 299.99719 * 6 5 4 41 41 H 1.08998 * 109.46934 * 59.99682 * 8 7 6 42 42 H 1.09003 * 109.46872 * 300.00158 * 8 7 6 43 43 H 1.09001 * 109.58900 * 4.64303 * 12 11 9 44 44 H 1.08996 * 109.58981 * 244.20987 * 12 11 9 45 45 H 1.08997 * 109.52746 * 292.52773 * 13 12 11 46 46 H 1.08993 * 109.58747 * 172.34243 * 13 12 11 47 47 H 1.09002 * 113.79034 * 205.27539 * 15 14 13 48 48 H 1.09003 * 113.79222 * 336.73782 * 15 14 13 49 49 H 0.96999 * 120.00072 * 180.02562 * 20 19 17 50 50 H 1.08997 * 113.79047 * 221.41593 * 25 16 15 51 51 H 1.09001 * 113.78628 * 89.95328 * 25 16 15 52 52 H 1.08995 * 109.52934 * 177.46603 * 26 14 13 53 53 H 1.08997 * 109.52609 * 297.68306 * 26 14 13 54 54 H 1.09003 * 109.59384 * 355.35571 * 27 11 9 55 55 H 1.09006 * 109.58865 * 115.78983 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0026 7 8 6.0863 4.2323 -0.0038 8 6 7.5109 4.3451 -0.0045 9 6 7.8995 5.8011 -0.0051 10 8 7.0410 6.6579 -0.0045 11 7 9.2010 6.1512 -0.0063 12 6 9.5914 7.5673 -0.0075 13 6 10.5147 7.8252 1.1892 14 6 11.6572 6.8128 1.1666 15 6 12.7052 7.0941 0.0808 16 7 13.4062 7.8885 1.1094 17 6 14.2959 8.9289 1.0765 18 1 14.6213 9.3312 0.1285 19 6 14.7795 9.4664 2.2614 20 7 14.3832 8.9757 3.4166 21 14 15.9937 10.8851 2.2164 22 1 16.2773 11.2495 0.8050 23 1 15.4135 12.0558 2.9223 24 1 17.2553 10.4785 2.8861 25 6 12.7634 7.1111 2.1879 26 6 11.1769 5.3638 1.1907 27 6 10.2491 5.1222 -0.0065 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8907 36 1 3.9337 0.9285 0.8892 37 1 3.7170 3.3991 0.8886 38 1 3.7163 3.3985 -0.8913 39 1 5.9726 2.3710 -0.8928 40 1 5.9741 2.3713 0.8873 41 1 7.9133 3.8608 -0.8942 42 1 7.9140 3.8622 0.8857 43 1 8.7018 8.1917 0.0759 44 1 10.1185 7.8003 -0.9326 45 1 9.9500 7.7166 2.1152 46 1 10.9210 8.8347 1.1264 47 1 13.2539 6.2089 -0.2406 48 1 12.3275 7.6879 -0.7517 49 1 14.7209 9.3515 4.2446 50 1 12.4320 7.7184 3.0301 51 1 13.3294 6.2309 2.4927 52 1 12.0348 4.6945 1.1275 53 1 10.6338 5.1754 2.1168 54 1 9.7929 4.1358 0.0776 55 1 10.8222 5.1845 -0.9316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698812254.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:34 Heat of formation + Delta-G solvation = -70.352005 kcal Electronic energy + Delta-G solvation = -29297.510538 eV Core-core repulsion = 25334.642161 eV Total energy + Delta-G solvation = -3962.868377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.58866 -40.22909 -38.78466 -37.12193 -36.92268 -34.42219 -33.72971 -32.49723 -32.02016 -29.82421 -28.76311 -27.90970 -26.68705 -25.00444 -24.66933 -24.10103 -22.91488 -22.10954 -21.83439 -20.75071 -18.95774 -18.68414 -18.13654 -17.54120 -17.41591 -16.90145 -16.70533 -16.53654 -16.09952 -15.91074 -15.58767 -15.35907 -15.08146 -14.92482 -14.65259 -14.33530 -14.08191 -13.97701 -13.81442 -13.69020 -13.56629 -13.36422 -13.11117 -12.90089 -12.84745 -12.74345 -12.62187 -12.44571 -12.19315 -12.14208 -12.12329 -11.75821 -11.67835 -11.64962 -11.54656 -11.44371 -11.33624 -11.19873 -11.01701 -10.80706 -10.66867 -10.62280 -9.61330 -8.85273 -7.88182 -5.19537 1.44406 1.45033 1.54921 1.56818 1.75341 2.48432 2.84615 3.33072 3.44400 3.54368 3.64150 3.94980 3.97242 3.98737 4.01071 4.13025 4.18121 4.20660 4.21851 4.30516 4.32163 4.41148 4.45124 4.50188 4.55986 4.62804 4.66660 4.71829 4.78006 4.81181 4.83375 4.90268 4.91366 4.94421 4.96083 5.06266 5.09817 5.11313 5.16242 5.23407 5.23441 5.26206 5.31386 5.36862 5.38980 5.49228 5.52208 5.54413 5.62192 5.78311 5.99087 6.15121 6.45262 6.95908 7.16030 7.64973 8.62133 9.28799 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.039881 B = 0.001541 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.924435 B =18167.476844 C =18295.286958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.056 3.944 7 O -0.402 6.402 8 C 0.049 3.951 9 C 0.507 3.493 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.125 3.875 13 C -0.089 4.089 14 C -0.083 4.083 15 C 0.130 3.870 16 N -0.640 5.640 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.954 5.954 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.167 3.833 26 C -0.114 4.114 27 C 0.109 3.891 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.246 0.754 50 H 0.031 0.969 51 H 0.018 0.982 52 H 0.093 0.907 53 H 0.068 0.932 54 H 0.120 0.880 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.678 -22.046 -9.309 31.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.019 4.019 7 O -0.321 6.321 8 C -0.029 4.029 9 C 0.296 3.704 10 O -0.461 6.461 11 N -0.336 5.336 12 C 0.002 3.998 13 C -0.127 4.127 14 C -0.084 4.084 15 C 0.005 3.995 16 N -0.366 5.366 17 C -0.356 4.356 18 H 0.099 0.901 19 C -0.260 4.260 20 N -0.604 5.604 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.221 1.221 25 C 0.042 3.958 26 C -0.152 4.152 27 C -0.012 4.012 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.036 0.964 52 H 0.111 0.889 53 H 0.087 0.913 54 H 0.138 0.862 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.045 -21.207 -9.225 31.269 hybrid contribution 1.274 1.237 0.656 1.893 sum -19.771 -19.970 -8.569 29.379 Atomic orbital electron populations 1.21798 0.95919 1.01856 1.01725 1.21528 0.95902 0.96409 1.02302 1.21611 0.95143 0.97190 1.01924 1.21465 0.95554 0.94612 1.03041 1.21525 0.93442 0.98221 1.02468 1.22785 0.95313 0.82003 1.01832 1.87972 1.19807 1.28581 1.95782 1.22365 0.83285 0.92095 1.05202 1.20995 0.81930 0.91949 0.75488 1.90686 1.50438 1.53620 1.51349 1.48140 1.05447 1.07714 1.72323 1.21435 0.98109 0.81919 0.98304 1.21344 0.94971 0.98618 0.97795 1.22103 0.93438 0.95659 0.97219 1.22788 0.90516 0.93667 0.92490 1.46324 1.51553 1.34630 1.04075 1.19440 1.16858 1.06462 0.92874 0.90119 1.25531 1.02853 1.02632 0.95032 1.70016 1.48657 1.44973 0.96728 0.85098 0.78268 0.78792 0.77747 1.18957 1.22258 1.22058 1.22185 0.89495 0.91874 0.92290 1.21822 1.00042 0.94349 0.99038 1.22075 0.88667 0.91222 0.99270 0.92861 0.92323 0.92962 0.91650 0.91778 0.92421 0.92269 0.90841 0.91041 0.92381 0.92139 0.91287 0.91624 0.86914 0.87508 0.90799 0.90338 0.92930 0.92823 0.92876 0.93290 0.94535 0.95069 0.96380 0.88891 0.91295 0.86185 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.12 -1.23 5.21 30.59 0.16 -1.07 16 4 C -0.11 -1.04 5.21 30.59 0.16 -0.88 16 5 C -0.12 -1.68 5.58 30.59 0.17 -1.51 16 6 C 0.06 0.78 5.94 71.98 0.43 1.21 16 7 O -0.40 -9.10 9.88 -129.94 -1.28 -10.38 16 8 C 0.05 0.86 4.75 71.23 0.34 1.19 16 9 C 0.51 13.59 7.77 87.66 0.68 14.27 16 10 O -0.58 -21.77 15.89 15.99 0.25 -21.51 16 11 N -0.60 -14.51 2.94 -818.46 -2.41 -16.92 16 12 C 0.12 3.64 6.30 86.42 0.54 4.18 16 13 C -0.09 -3.06 5.21 30.60 0.16 -2.90 16 14 C -0.08 -2.78 0.77 -52.04 -0.04 -2.82 16 15 C 0.13 4.77 7.72 86.32 0.67 5.43 16 16 N -0.64 -31.93 3.53 -722.66 -2.55 -34.48 16 17 C -0.23 -12.74 10.70 84.03 0.90 -11.84 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.95 -58.19 11.39 21.65 0.25 -57.94 16 21 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 C 0.17 7.71 6.64 86.31 0.57 8.28 16 26 C -0.11 -2.59 5.26 30.61 0.16 -2.43 16 27 C 0.11 1.82 6.22 86.43 0.54 2.36 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.11 1.16 7.90 -2.39 -0.02 1.14 16 42 H 0.11 1.27 7.72 -2.39 -0.02 1.25 16 43 H 0.07 2.40 6.98 -2.39 -0.02 2.38 16 44 H 0.08 2.14 7.50 -2.39 -0.02 2.12 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.05 2.20 8.01 -2.39 -0.02 2.18 16 47 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 48 H 0.05 1.72 7.41 -2.39 -0.02 1.70 16 49 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.03 1.67 7.12 -2.39 -0.02 1.66 16 51 H 0.02 0.86 8.09 -2.39 -0.02 0.84 16 52 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 53 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 54 H 0.12 1.05 5.89 -2.39 -0.01 1.04 16 55 H 0.09 1.31 8.08 -2.38 -0.02 1.29 16 Total: -1.00 -77.40 428.30 3.90 -73.49 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.82 Total: 10.87 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.80 Total: 8.53 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -4.71 Total: -109.34 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.03 Total: -31.89 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -77.40 3.90 -73.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698812254.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.142 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds