Wall clock time and date at job start Tue Mar 31 2020 20:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99817 * 2 1 4 4 C 1.53003 * 109.46889 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46974 * 65.00609 * 4 3 2 6 6 C 1.36942 * 119.99983 * 269.99482 * 5 4 3 7 7 H 1.07995 * 119.99948 * 143.93953 * 6 5 4 8 8 C 1.38814 * 119.99815 * 323.94840 * 6 5 4 9 9 N 1.31618 * 119.99847 * 339.01712 * 8 6 5 10 10 Si 1.86800 * 120.00102 * 159.02023 * 8 6 5 11 11 H 1.48506 * 109.47010 * 89.99333 * 10 8 6 12 12 H 1.48491 * 109.47092 * 209.99804 * 10 8 6 13 13 H 1.48497 * 109.47160 * 329.99836 * 10 8 6 14 14 C 1.46497 * 120.00568 * 89.99973 * 5 4 3 15 15 C 1.53040 * 109.46147 * 239.63348 * 14 5 4 16 16 C 1.53193 * 109.31470 * 178.62177 * 15 14 5 17 17 N 1.46927 * 108.77389 * 54.63463 * 16 15 14 18 18 C 1.34781 * 120.63078 * 126.36428 * 17 16 15 19 19 O 1.21614 * 120.00036 * 4.65708 * 18 17 16 20 20 C 1.47102 * 120.00057 * 184.65113 * 18 17 16 21 21 C 1.32990 * 120.00214 * 174.55692 * 20 18 17 22 22 C 1.50702 * 120.00252 * 180.27562 * 21 20 18 23 23 C 1.52998 * 109.47076 * 0.02562 * 22 21 20 24 24 C 1.52999 * 109.46905 * 120.00145 * 22 21 20 25 25 C 1.52995 * 109.47256 * 240.00134 * 22 21 20 26 26 C 1.46925 * 118.73940 * 306.64334 * 17 16 15 27 27 C 1.52762 * 109.00799 * 53.30912 * 26 17 16 28 28 H 1.08996 * 109.47174 * 299.99594 * 1 2 3 29 29 H 1.08993 * 109.47151 * 59.99986 * 1 2 3 30 30 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46960 * 60.00343 * 3 2 1 32 32 H 1.08998 * 109.47195 * 300.00190 * 3 2 1 33 33 H 1.09000 * 109.47391 * 305.00145 * 4 3 2 34 34 H 1.09004 * 109.46684 * 185.00464 * 4 3 2 35 35 H 0.96998 * 120.00040 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46090 * 359.60387 * 14 5 4 37 37 H 1.09003 * 109.49924 * 58.67515 * 15 14 5 38 38 H 1.09002 * 109.52423 * 298.59216 * 15 14 5 39 39 H 1.08996 * 109.58890 * 294.85127 * 16 15 14 40 40 H 1.09003 * 109.70347 * 174.48707 * 16 15 14 41 41 H 1.07999 * 119.99987 * 354.83699 * 20 18 17 42 42 H 1.08009 * 119.99820 * 0.28113 * 21 20 18 43 43 H 1.08996 * 109.47063 * 59.99784 * 23 22 21 44 44 H 1.08993 * 109.46940 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.46944 * 300.00139 * 23 22 21 46 46 H 1.09008 * 109.47063 * 60.00374 * 24 22 21 47 47 H 1.09001 * 109.47338 * 179.97438 * 24 22 21 48 48 H 1.08996 * 109.47279 * 300.00244 * 24 22 21 49 49 H 1.09004 * 109.46827 * 59.99823 * 25 22 21 50 50 H 1.08993 * 109.47260 * 180.02562 * 25 22 21 51 51 H 1.09007 * 109.47361 * 300.00599 * 25 22 21 52 52 H 1.09003 * 109.58671 * 173.13834 * 26 17 16 53 53 H 1.08991 * 109.58863 * 293.57132 * 26 17 16 54 54 H 1.09001 * 109.56545 * 185.55372 * 27 26 17 55 55 H 1.09002 * 109.36350 * 65.49769 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0968 -0.7969 -1.3370 7 1 3.8446 -1.3056 -2.2557 8 6 4.5435 -1.5231 -0.2416 9 7 5.2293 -0.9248 0.7092 10 14 4.1715 -3.3494 -0.1169 11 1 5.2639 -4.1222 -0.7612 12 1 4.0676 -3.7369 1.3128 13 1 2.8875 -3.6410 -0.8035 14 6 4.2863 1.4007 -2.4148 15 6 3.3741 1.0127 -3.5807 16 6 3.6781 1.9121 -4.7830 17 7 5.1133 1.8276 -5.0858 18 6 5.5361 1.5121 -6.3261 19 8 4.7306 1.3774 -7.2272 20 6 6.9719 1.3309 -6.5899 21 6 7.3811 0.9145 -7.7847 22 6 8.8516 0.7229 -8.0531 23 6 9.6494 1.0732 -6.7954 24 6 9.1148 -0.7355 -8.4336 25 6 9.2835 1.6358 -9.2023 26 6 6.0789 2.0875 -4.0093 27 6 5.7480 1.1916 -2.8171 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8463 -0.8899 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1765 0.0890 35 1 5.5418 -1.4322 1.4746 36 1 4.1259 2.4487 -2.1614 37 1 2.3325 1.1398 -3.2856 38 1 3.5512 -0.0282 -3.8511 39 1 3.4152 2.9426 -4.5443 40 1 3.1023 1.5787 -5.6464 41 1 7.6934 1.5318 -5.8118 42 1 6.6595 0.7136 -8.5629 43 1 9.3416 0.4225 -5.9769 44 1 10.7129 0.9341 -6.9893 45 1 9.4619 2.1120 -6.5238 46 1 8.5464 -0.9854 -9.3296 47 1 10.1783 -0.8741 -8.6282 48 1 8.8070 -1.3859 -7.6149 49 1 9.0960 2.6747 -8.9311 50 1 10.3470 1.4969 -9.3967 51 1 8.7151 1.3859 -10.0982 52 1 7.0868 1.8673 -4.3614 53 1 6.0157 3.1325 -3.7061 54 1 6.3961 1.4459 -1.9784 55 1 5.9033 0.1490 -3.0944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699687048.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:26 Heat of formation + Delta-G solvation = -64.837696 kcal Electronic energy + Delta-G solvation = -31149.973545 eV Core-core repulsion = 27187.344285 eV Total energy + Delta-G solvation = -3962.629259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.23374 -39.33101 -38.65406 -38.18116 -36.51475 -33.83758 -32.92714 -32.13758 -31.62728 -29.75251 -28.20835 -28.08585 -27.16088 -26.63250 -25.37397 -24.29523 -23.59016 -22.21348 -21.40903 -20.07990 -19.10864 -18.55706 -17.98207 -17.29662 -16.94824 -16.66587 -16.52892 -16.15653 -15.90600 -15.67746 -15.49013 -15.26441 -15.13805 -15.02895 -14.84122 -14.43406 -14.35792 -13.78107 -13.45202 -13.38944 -13.17164 -13.14203 -13.04015 -12.86679 -12.81477 -12.72033 -12.53611 -12.53275 -12.36015 -12.23053 -12.06761 -11.92674 -11.90193 -11.78452 -11.60804 -11.50708 -11.48672 -11.13104 -10.75587 -10.42169 -10.38362 -10.29091 -9.57502 -8.42562 -7.69169 -5.25314 0.41424 1.43532 1.47907 1.56734 2.05491 2.32944 2.59179 3.23705 3.41468 3.47314 3.63375 3.84457 3.87828 4.05221 4.09237 4.12928 4.26205 4.32676 4.37126 4.43191 4.44695 4.47902 4.54350 4.64108 4.66836 4.72353 4.76965 4.80191 4.82232 4.83021 4.85138 4.91972 4.92043 4.93908 5.01675 5.04080 5.04614 5.13635 5.15469 5.18237 5.25710 5.31457 5.40143 5.43998 5.53764 5.58567 5.63996 5.70816 5.78530 5.92027 6.47019 6.53155 6.71412 7.17287 7.32126 8.02408 8.49644 9.26765 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.002991 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.050716 B = 9360.572410 C =10349.857284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.054 3.946 4 C 0.137 3.863 5 N -0.583 5.583 6 C -0.217 4.217 7 H 0.036 0.964 8 C -0.023 4.023 9 N -0.915 5.915 10 Si 0.933 3.067 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.285 1.285 14 C 0.173 3.827 15 C -0.124 4.124 16 C 0.121 3.879 17 N -0.602 5.602 18 C 0.538 3.462 19 O -0.599 6.599 20 C -0.231 4.231 21 C -0.046 4.046 22 C -0.046 4.046 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.135 4.135 26 C 0.114 3.886 27 C -0.125 4.125 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.058 0.942 52 H 0.102 0.898 53 H 0.091 0.909 54 H 0.064 0.936 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 9.591 -12.426 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.024 4.024 4 C 0.011 3.989 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.054 0.946 8 C -0.220 4.220 9 N -0.561 5.561 10 Si 0.764 3.236 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.211 1.211 14 C 0.066 3.934 15 C -0.164 4.164 16 C -0.002 4.002 17 N -0.332 5.332 18 C 0.331 3.669 19 O -0.482 6.482 20 C -0.251 4.251 21 C -0.066 4.066 22 C -0.046 4.046 23 C -0.207 4.207 24 C -0.197 4.197 25 C -0.192 4.192 26 C -0.008 4.008 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.172 0.828 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.077 0.923 52 H 0.120 0.880 53 H 0.110 0.890 54 H 0.082 0.918 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.622 9.307 -12.689 16.710 hybrid contribution -0.901 -1.303 0.570 1.684 sum 4.722 8.004 -12.119 15.271 Atomic orbital electron populations 1.22793 0.81862 1.02377 0.99986 1.88148 1.19336 1.28961 1.95161 1.23288 0.97107 0.83807 0.98220 1.21047 0.89417 0.96538 0.91926 1.43890 1.75588 1.02093 1.08683 1.18650 1.34907 0.83340 0.97929 0.94627 1.25326 0.97940 0.99444 0.99254 1.70009 1.38040 1.35907 1.12095 0.85815 0.77638 0.83907 0.76206 1.21772 1.22104 1.21116 1.20516 0.92097 0.93842 0.86906 1.22157 1.00210 0.98493 0.95554 1.21554 0.80835 1.00394 0.97398 1.48122 1.07770 1.67774 1.09565 1.19158 0.90360 0.75581 0.81819 1.90704 1.57740 1.54627 1.45172 1.22894 0.93253 1.08488 1.00429 1.23882 0.97819 0.89371 0.95567 1.19837 0.89851 0.97264 0.97673 1.22033 1.00529 1.01991 0.96168 1.21851 1.02847 0.93584 1.01390 1.21815 1.02243 0.98683 0.96483 1.21924 0.92696 1.00167 0.86037 1.22062 0.98590 0.98953 0.96878 0.93454 0.94016 0.90354 0.93689 0.94392 0.91088 0.92572 0.94513 0.91242 0.91824 0.94895 0.89506 0.91028 0.82793 0.87321 0.92715 0.90691 0.91575 0.92258 0.90332 0.93355 0.92401 0.90441 0.92337 0.88041 0.89046 0.91769 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.16 10.18 -148.98 -1.52 -18.67 16 3 C 0.05 2.08 6.28 71.98 0.45 2.53 16 4 C 0.14 6.04 5.69 86.38 0.49 6.54 16 5 N -0.58 -26.91 2.36 -677.89 -1.60 -28.50 16 6 C -0.22 -11.62 7.77 84.03 0.65 -10.97 16 7 H 0.04 2.03 6.86 -2.91 -0.02 2.01 16 8 C -0.02 -1.29 4.98 84.86 0.42 -0.87 16 9 N -0.91 -52.17 11.33 21.65 0.25 -51.92 16 10 Si 0.93 46.58 29.60 68.60 2.03 48.61 16 11 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 14 C 0.17 6.46 2.59 45.02 0.12 6.58 16 15 C -0.12 -4.49 5.29 30.67 0.16 -4.32 16 16 C 0.12 3.73 6.42 86.36 0.55 4.29 16 17 N -0.60 -18.13 2.98 -824.00 -2.45 -20.58 16 18 C 0.54 17.33 7.64 86.57 0.66 17.99 16 19 O -0.60 -23.38 15.66 -4.08 -0.06 -23.44 16 20 C -0.23 -5.70 8.32 23.43 0.19 -5.51 16 21 C -0.05 -1.03 8.33 24.52 0.20 -0.83 16 22 C -0.05 -0.74 0.99 -52.93 -0.05 -0.79 16 23 C -0.15 -2.15 7.13 71.98 0.51 -1.64 16 24 C -0.14 -2.12 8.45 71.98 0.61 -1.51 16 25 C -0.14 -1.73 8.46 71.98 0.61 -1.13 16 26 C 0.11 2.95 6.32 86.22 0.54 3.50 16 27 C -0.12 -4.39 5.30 30.53 0.16 -4.22 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 3.74 5.38 -2.39 -0.01 3.73 16 34 H 0.06 2.21 7.92 -2.38 -0.02 2.19 16 35 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.40 7.03 -2.39 -0.02 1.39 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.40 7.03 -2.39 -0.02 2.39 16 41 H 0.15 3.11 3.56 -2.91 -0.01 3.10 16 42 H 0.11 2.76 7.50 -2.91 -0.02 2.74 16 43 H 0.05 0.89 7.50 -2.39 -0.02 0.87 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.88 7.50 -2.39 -0.02 0.86 16 46 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 52 H 0.10 2.19 5.30 -2.39 -0.01 2.17 16 53 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 54 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 55 H 0.04 1.54 7.71 -2.39 -0.02 1.52 16 Total: -1.00 -68.71 424.08 5.03 -63.68 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.84 Total: 19.12 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 7.55 Total: 11.71 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -3.81 Total: -101.01 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.58 Total: -42.11 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -68.71 5.03 -63.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699687048.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.158 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds