Wall clock time and date at job start Tue Mar 31 2020 20:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47175 * 2 1 4 4 C 1.53003 * 109.47219 * 240.00210 * 2 1 3 5 5 C 1.50705 * 109.47165 * 120.00190 * 2 1 3 6 6 C 1.32993 * 119.99989 * 46.59712 * 5 2 1 7 7 C 1.47098 * 119.99890 * 7.22020 * 6 5 2 8 8 O 1.21606 * 120.00371 * 6.85688 * 7 6 5 9 9 N 1.34782 * 119.99657 * 187.13154 * 7 6 5 10 10 C 1.46920 * 120.63265 * 4.64134 * 9 7 6 11 11 C 1.52763 * 109.00682 * 233.58120 * 10 9 7 12 12 C 1.53034 * 109.38472 * 305.58837 * 11 10 9 13 13 O 1.42902 * 109.45364 * 181.25603 * 12 11 10 14 14 C 1.42895 * 114.00264 * 89.93007 * 13 12 11 15 15 C 1.52999 * 109.47170 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47083 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47018 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99790 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00390 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99536 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00312 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47130 * 89.99644 * 22 20 18 24 24 H 1.48502 * 109.47162 * 210.00139 * 22 20 18 25 25 H 1.48502 * 109.46790 * 329.99872 * 22 20 18 26 26 C 1.53041 * 109.54061 * 61.23655 * 12 11 10 27 27 C 1.46926 * 120.62683 * 184.91250 * 9 7 6 28 28 H 1.08997 * 109.47524 * 336.72508 * 1 2 3 29 29 H 1.09000 * 109.47238 * 96.72792 * 1 2 3 30 30 H 1.09000 * 109.47206 * 216.72578 * 1 2 3 31 31 H 1.08996 * 109.47088 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47176 * 300.00009 * 3 2 1 33 33 H 1.09002 * 109.46839 * 60.00372 * 3 2 1 34 34 H 1.09000 * 109.46947 * 273.43984 * 4 2 1 35 35 H 1.08999 * 109.46709 * 33.44100 * 4 2 1 36 36 H 1.08995 * 109.47203 * 153.44344 * 4 2 1 37 37 H 1.08003 * 120.00086 * 226.59266 * 5 2 1 38 38 H 1.08002 * 119.99668 * 187.22565 * 6 5 2 39 39 H 1.09004 * 109.58545 * 353.41138 * 10 9 7 40 40 H 1.08999 * 109.59461 * 113.83977 * 10 9 7 41 41 H 1.08998 * 109.56689 * 185.54473 * 11 10 9 42 42 H 1.09000 * 109.35698 * 65.49526 * 11 10 9 43 43 H 1.09004 * 109.45858 * 301.22015 * 12 11 10 44 44 H 1.08996 * 109.47384 * 300.00575 * 14 13 12 45 45 H 1.09002 * 109.46732 * 60.00774 * 14 13 12 46 46 H 1.08996 * 109.47342 * 300.00484 * 15 14 13 47 47 H 1.09002 * 109.46756 * 60.00672 * 15 14 13 48 48 H 1.08996 * 109.47192 * 300.00287 * 16 15 14 49 49 H 1.09002 * 109.47011 * 60.00540 * 16 15 14 50 50 H 0.96998 * 119.99882 * 0.02562 * 17 16 15 51 51 H 0.96993 * 119.99904 * 179.97438 * 21 20 18 52 52 H 1.08997 * 109.49733 * 178.68420 * 26 12 11 53 53 H 1.08997 * 109.49647 * 58.58768 * 26 12 11 54 54 H 1.09000 * 109.58823 * 246.15839 * 27 9 7 55 55 H 1.08995 * 109.59088 * 6.44571 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.5078 -1.8805 1.5834 7 6 0.5532 -2.5575 0.6922 8 8 0.3381 -2.1126 -0.4190 9 7 -0.0872 -3.6677 1.1092 10 6 0.0799 -4.1562 2.4847 11 6 0.5079 -5.6221 2.4434 12 6 -0.4963 -6.4212 1.6098 13 8 -0.1133 -7.7979 1.5946 14 6 -0.6750 -8.5693 2.6582 15 6 -0.1994 -10.0190 2.5432 16 6 -0.8013 -10.8451 3.6816 17 7 -0.3454 -12.2330 3.5718 18 6 -0.7572 -13.1635 4.4882 19 1 -1.4185 -12.8743 5.2916 20 6 -0.3247 -14.4785 4.3844 21 7 -0.7210 -15.3729 5.2649 22 14 0.8196 -14.9785 2.9952 23 1 2.2294 -14.8104 3.4304 24 1 0.5769 -16.4002 2.6414 25 1 0.5622 -14.1224 1.8095 26 6 -0.5169 -5.8818 0.1778 27 6 -0.9610 -4.4157 0.1950 28 1 -0.3634 0.9440 0.4061 29 1 -0.3634 -0.1204 -1.0206 30 1 -0.3633 -0.8237 0.6145 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.1030 -1.7911 -1.0508 35 1 1.3526 -0.5449 -2.0766 36 1 3.0277 -0.3414 -1.5103 37 1 2.8183 -0.2695 1.8256 38 1 1.7827 -2.3336 2.5245 39 1 0.8450 -3.5677 2.9910 40 1 -0.8652 -4.0694 3.0207 41 1 0.5393 -6.0219 3.4570 42 1 1.4970 -5.6971 1.9916 43 1 -1.4897 -6.3255 2.0482 44 1 -0.3545 -8.1569 3.6148 45 1 -1.7628 -8.5374 2.5949 46 1 -0.5196 -10.4316 1.5865 47 1 0.8883 -10.0505 2.6067 48 1 -0.4814 -10.4325 4.6384 49 1 -1.8890 -10.8135 3.6177 50 1 0.2489 -12.4927 2.8505 51 1 -0.4191 -16.2918 5.1922 52 1 -1.2151 -6.4664 -0.4211 53 1 0.4818 -5.9543 -0.2527 54 1 -1.9927 -4.3504 0.5405 55 1 -0.8844 -3.9968 -0.8083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700505179.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:38 Heat of formation + Delta-G solvation = -46.803527 kcal Electronic energy + Delta-G solvation = -29528.468936 eV Core-core repulsion = 25566.621698 eV Total energy + Delta-G solvation = -3961.847239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.81214 -40.04934 -38.42782 -37.27025 -36.69657 -34.36541 -33.51620 -32.53016 -31.88759 -31.51578 -28.14766 -28.06413 -27.23318 -26.01757 -24.72381 -24.02808 -23.40782 -22.58550 -21.80314 -20.56502 -19.64247 -19.04077 -18.29657 -17.62887 -17.03128 -16.79875 -16.62742 -16.49623 -15.91762 -15.67734 -15.44624 -15.33921 -15.23322 -14.94893 -14.78321 -14.71520 -14.40294 -14.30607 -13.99477 -13.75539 -13.43610 -13.26555 -13.06486 -12.94125 -12.87298 -12.65434 -12.49486 -12.45266 -12.24514 -12.07222 -11.99149 -11.89738 -11.83386 -11.81366 -11.77406 -11.68365 -11.47522 -11.40294 -10.99119 -10.47318 -10.32946 -10.21247 -9.47277 -9.32791 -8.04746 -5.38979 0.46490 1.38054 1.40826 1.48426 2.06477 2.30585 2.47288 2.60411 3.26782 3.57161 3.64309 3.68916 3.81529 3.87661 4.00805 4.03771 4.08970 4.13789 4.21370 4.26644 4.29178 4.34257 4.42537 4.46187 4.52661 4.59223 4.68439 4.70180 4.77373 4.78315 4.81038 4.81868 4.83373 4.85110 4.94892 4.95058 5.01693 5.12592 5.20287 5.22868 5.23643 5.26029 5.29695 5.30822 5.37184 5.51707 5.51987 5.56851 5.73279 5.74747 6.19144 6.32572 6.47647 7.05573 7.25888 7.81679 8.00389 9.16516 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033696 B = 0.001540 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.754360 B =18171.789084 C =18211.175773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.044 4.044 6 C -0.236 4.236 7 C 0.526 3.474 8 O -0.543 6.543 9 N -0.612 5.612 10 C 0.110 3.890 11 C -0.154 4.154 12 C 0.086 3.914 13 O -0.401 6.401 14 C 0.075 3.925 15 C -0.117 4.117 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.241 4.241 19 H 0.059 0.941 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.253 1.253 26 C -0.125 4.125 27 C 0.121 3.879 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.032 0.968 49 H 0.029 0.971 50 H 0.366 0.634 51 H 0.259 0.741 52 H 0.083 0.917 53 H 0.057 0.943 54 H 0.081 0.919 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 38.012 -9.871 39.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.167 4.167 5 C -0.063 4.063 6 C -0.256 4.256 7 C 0.319 3.681 8 O -0.424 6.424 9 N -0.346 5.346 10 C -0.012 4.012 11 C -0.193 4.193 12 C 0.028 3.972 13 O -0.321 6.321 14 C -0.002 4.002 15 C -0.155 4.155 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.371 4.371 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.178 1.178 26 C -0.163 4.163 27 C -0.002 4.002 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.199 0.801 51 H 0.068 0.932 52 H 0.102 0.898 53 H 0.076 0.924 54 H 0.099 0.901 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.523 38.102 -10.408 39.756 hybrid contribution 0.309 -1.170 -0.385 1.270 sum 4.832 36.932 -10.793 38.779 Atomic orbital electron populations 1.22168 0.93977 0.99302 1.01469 1.19735 0.95846 0.95364 0.93686 1.21980 1.01337 0.94185 1.02129 1.21809 0.98853 1.00277 0.95715 1.24138 0.94463 0.93204 0.94537 1.22805 1.02112 0.98842 1.01844 1.18878 0.81025 0.80500 0.87672 1.90928 1.64593 1.63805 1.23081 1.48169 1.46667 1.26394 1.13328 1.21846 1.03619 0.93820 0.81946 1.22335 0.99826 0.95451 1.01639 1.22191 0.97989 0.80730 0.96260 1.87898 1.72763 1.20832 1.50563 1.22350 0.97448 0.90095 0.90289 1.21529 1.01315 0.93988 0.98710 1.20653 0.96829 0.82844 0.96579 1.42737 1.58866 1.06459 1.32714 1.19072 1.23155 0.89765 1.05149 0.92302 1.25525 1.02581 0.95881 1.01408 1.69881 1.50844 1.03108 1.39410 0.85393 0.79047 0.77205 0.80060 1.20271 1.22006 1.17810 1.21918 1.02637 0.95577 0.96161 1.21478 0.93853 0.89578 0.95270 0.94780 0.94012 0.92562 0.91619 0.92768 0.91822 0.93066 0.93983 0.93694 0.83039 0.82878 0.87150 0.89605 0.89319 0.91868 0.90689 0.91818 0.92167 0.91738 0.91468 0.95045 0.95316 0.80097 0.93233 0.89825 0.92367 0.90062 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 7.52 71.98 0.54 -1.35 16 2 C -0.05 -0.64 0.75 -52.93 -0.04 -0.67 16 3 C -0.14 -1.37 8.06 71.98 0.58 -0.79 16 4 C -0.11 -1.86 7.59 71.98 0.55 -1.31 16 5 C -0.04 -0.46 8.54 24.52 0.21 -0.25 16 6 C -0.24 -2.67 8.82 23.43 0.21 -2.46 16 7 C 0.53 8.65 5.64 86.57 0.49 9.14 16 8 O -0.54 -11.55 8.00 -4.05 -0.03 -11.58 16 9 N -0.61 -8.57 2.98 -824.02 -2.45 -11.02 16 10 C 0.11 1.03 6.32 86.22 0.55 1.57 16 11 C -0.15 -2.00 5.68 30.53 0.17 -1.83 16 12 C 0.09 1.41 2.57 30.62 0.08 1.49 16 13 O -0.40 -9.25 9.99 -148.98 -1.49 -10.74 16 14 C 0.07 1.70 5.75 71.98 0.41 2.11 16 15 C -0.12 -3.44 5.70 30.59 0.17 -3.27 16 16 C 0.16 5.83 6.26 86.38 0.54 6.37 16 17 N -0.76 -36.24 5.41 -343.44 -1.86 -38.10 16 18 C -0.24 -13.94 10.47 84.04 0.88 -13.06 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.98 -63.28 13.97 21.65 0.30 -62.98 16 22 Si 0.96 45.89 27.74 68.60 1.90 47.80 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 26 C -0.12 -2.02 5.73 30.67 0.18 -1.84 16 27 C 0.12 1.76 6.42 86.36 0.55 2.31 16 28 H 0.03 0.50 7.73 -2.39 -0.02 0.49 16 29 H 0.04 0.85 6.87 -2.39 -0.02 0.83 16 30 H 0.06 1.04 4.35 -3.44 -0.01 1.03 16 31 H 0.06 0.51 8.11 -2.39 -0.02 0.49 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 34 H 0.05 1.05 5.65 -2.39 -0.01 1.04 16 35 H 0.04 0.81 7.40 -2.39 -0.02 0.79 16 36 H 0.04 0.64 7.87 -2.39 -0.02 0.63 16 37 H 0.15 0.75 8.01 -2.91 -0.02 0.72 16 38 H 0.15 0.93 5.92 -2.91 -0.02 0.91 16 39 H 0.11 0.61 5.32 -2.38 -0.01 0.60 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 1.03 7.84 -2.39 -0.02 1.01 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 44 H 0.06 1.26 7.84 -2.39 -0.02 1.24 16 45 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.37 16.66 5.53 -92.71 -0.51 16.14 16 51 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.08 1.47 7.03 -2.39 -0.02 1.46 16 Total: -1.00 -72.51 413.40 3.19 -69.32 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.28 Total: 24.39 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.54 Total: -7.09 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.01 Total: -112.10 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.52 Total: -22.32 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.80 kcal Total: -72.51 3.19 -69.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700505179.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.518 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds