Wall clock time and date at job start Tue Mar 31 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46665 * 2 1 4 4 C 1.52990 * 109.47060 * 240.00136 * 2 1 3 5 5 C 1.52997 * 109.47276 * 119.99565 * 2 1 3 6 6 C 1.53003 * 109.46900 * 60.00202 * 5 2 1 7 7 H 1.09001 * 115.54715 * 29.33412 * 6 5 2 8 8 C 1.52994 * 117.50164 * 243.61787 * 6 5 2 9 9 C 1.52997 * 60.00325 * 252.50899 * 8 6 5 10 10 H 1.09005 * 117.51459 * 107.47415 * 9 8 6 11 11 C 1.50698 * 117.50221 * 252.51099 * 9 8 6 12 12 O 1.21277 * 120.00085 * 68.61607 * 11 9 8 13 13 N 1.34779 * 119.99843 * 248.62535 * 11 9 8 14 14 C 1.46492 * 119.99900 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47377 * 177.08091 * 14 13 11 16 16 N 1.46503 * 109.61156 * 54.93944 * 15 14 13 17 17 C 1.36932 * 120.00199 * 58.95489 * 16 15 14 18 18 H 1.08004 * 119.99773 * 5.86224 * 17 16 15 19 19 C 1.38813 * 120.00397 * 185.85679 * 17 16 15 20 20 N 1.31617 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00190 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47454 * 90.00181 * 21 19 17 23 23 H 1.48507 * 109.47033 * 209.99896 * 21 19 17 24 24 H 1.48502 * 109.47143 * 329.99646 * 21 19 17 25 25 C 1.53176 * 109.54515 * 294.72218 * 15 14 13 26 26 C 1.53086 * 109.16732 * 183.14896 * 25 15 14 27 27 O 1.42905 * 109.41550 * 57.60581 * 26 25 15 28 28 C 1.42909 * 114.09425 * 298.84365 * 27 26 25 29 29 C 1.53089 * 109.41644 * 61.16048 * 28 27 26 30 30 H 1.09007 * 109.47314 * 299.99569 * 1 2 3 31 31 H 1.08993 * 109.47611 * 59.99733 * 1 2 3 32 32 H 1.08997 * 109.46703 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46985 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47406 * 299.99903 * 3 2 1 35 35 H 1.09000 * 109.47149 * 60.00477 * 3 2 1 36 36 H 1.08994 * 109.47290 * 299.99866 * 4 2 1 37 37 H 1.09003 * 109.47201 * 59.99980 * 4 2 1 38 38 H 1.09001 * 109.47139 * 179.97438 * 4 2 1 39 39 H 1.09000 * 109.47776 * 300.00281 * 5 2 1 40 40 H 1.09002 * 109.47222 * 179.97438 * 5 2 1 41 41 H 1.09005 * 117.49897 * 145.02211 * 8 6 5 42 42 H 1.08996 * 117.49699 * 0.02562 * 8 6 5 43 43 H 0.96998 * 119.99748 * 359.97438 * 13 11 9 44 44 H 1.08998 * 109.47281 * 57.08451 * 14 13 11 45 45 H 1.08999 * 109.47473 * 297.07939 * 14 13 11 46 46 H 0.97000 * 119.99865 * 238.95724 * 16 15 14 47 47 H 0.96996 * 120.00614 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.52594 * 63.23711 * 25 15 14 49 49 H 1.09001 * 109.56919 * 303.08763 * 25 15 14 50 50 H 1.08995 * 109.48296 * 177.58793 * 26 25 15 51 51 H 1.09003 * 109.48101 * 297.62514 * 26 25 15 52 52 H 1.09003 * 109.48270 * 301.17301 * 28 27 26 53 53 H 1.09001 * 109.48841 * 181.14229 * 28 27 26 54 54 H 1.08997 * 109.52569 * 182.48280 * 29 28 27 55 55 H 1.09002 * 109.52721 * 62.29227 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 6 1.5301 -2.1637 1.2493 7 1 1.3626 -2.6031 0.2659 8 6 0.5862 -2.5793 2.3794 9 6 2.0286 -3.0892 2.3610 10 1 2.7202 -2.6705 3.0921 11 6 2.2499 -4.5386 2.0127 12 8 2.0333 -4.9314 0.8859 13 7 2.6883 -5.3984 2.9535 14 6 2.9028 -6.8075 2.6151 15 6 3.4662 -7.5442 3.8320 16 7 2.5775 -7.3487 4.9802 17 6 1.2694 -7.7472 4.9092 18 1 0.9165 -8.2902 4.0448 19 6 0.3969 -7.4535 5.9481 20 7 0.8268 -6.7914 7.0012 21 14 -1.3874 -7.9978 5.8515 22 1 -1.5254 -9.3503 6.4487 23 1 -2.2390 -7.0375 6.5986 24 1 -1.8164 -8.0381 4.4303 25 6 4.8584 -6.9975 4.1628 26 6 5.4462 -7.7930 5.3312 27 8 5.4936 -9.1790 4.9861 28 6 4.2152 -9.7562 4.7127 29 6 3.5780 -9.0396 3.5194 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2492 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 1.6768 -0.2073 2.1393 40 1 3.1301 -0.7215 1.2490 41 1 -0.2027 -3.2922 2.1397 42 1 0.3282 -1.8249 3.1226 43 1 2.8617 -5.0841 3.8547 44 1 3.6091 -6.8790 1.7881 45 1 1.9549 -7.2596 2.3236 46 1 2.9157 -6.9368 5.7907 47 1 0.2171 -6.5858 7.7271 48 1 4.7805 -5.9464 4.4404 49 1 5.5061 -7.0971 3.2918 50 1 6.4542 -7.4365 5.5431 51 1 4.8202 -7.6593 6.2134 52 1 3.5731 -9.6481 5.5869 53 1 4.3362 -10.8139 4.4791 54 1 2.5843 -9.4488 3.3369 55 1 4.1993 -9.1813 2.6351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724357439.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:01 Heat of formation + Delta-G solvation = -89.756274 kcal Electronic energy + Delta-G solvation = -31074.064517 eV Core-core repulsion = 27110.354708 eV Total energy + Delta-G solvation = -3963.709810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26907 -40.50374 -39.10275 -37.35681 -36.41096 -35.07814 -33.83807 -31.99664 -30.96505 -29.10163 -28.17565 -28.07315 -27.98782 -25.98385 -25.02044 -24.34721 -23.11353 -22.02724 -20.97316 -20.11053 -19.59754 -19.11929 -18.24769 -17.22140 -17.03658 -16.76904 -16.49668 -16.17794 -15.84195 -15.73391 -15.50622 -15.42396 -15.30860 -15.15309 -14.72231 -14.23717 -14.14106 -13.90155 -13.69813 -13.59939 -13.23343 -13.14915 -13.08954 -12.94516 -12.86308 -12.70081 -12.59070 -12.55221 -12.36411 -12.25318 -12.11505 -11.88082 -11.72632 -11.61112 -11.52081 -11.31776 -11.15078 -11.09484 -10.96637 -10.92458 -10.69372 -10.34049 -9.90702 -8.98840 -7.91918 -5.18093 1.43054 1.46578 1.51304 1.57460 2.28796 2.55342 2.92575 3.06216 3.41141 3.63389 3.73167 3.76704 3.86194 3.87944 3.98587 4.04390 4.07142 4.13396 4.16243 4.22391 4.26509 4.45541 4.47812 4.58879 4.70459 4.71842 4.75516 4.77815 4.79862 4.82176 4.86602 4.87789 4.93494 4.98711 5.00428 5.01196 5.03991 5.07770 5.13621 5.18037 5.20768 5.26392 5.27986 5.32727 5.36788 5.47388 5.55575 5.56970 5.60249 5.64224 6.29824 6.35261 6.68531 7.33083 7.39642 8.07390 8.35148 9.29999 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.003059 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.337714 B = 9151.936553 C =10695.371510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.102 4.102 7 H 0.100 0.900 8 C -0.147 4.147 9 C -0.196 4.196 10 H 0.142 0.858 11 C 0.532 3.468 12 O -0.596 6.596 13 N -0.693 5.693 14 C 0.127 3.873 15 C 0.188 3.812 16 N -0.711 5.711 17 C -0.214 4.214 18 H 0.063 0.937 19 C -0.056 4.056 20 N -0.956 5.956 21 Si 0.947 3.053 22 H -0.291 1.291 23 H -0.298 1.298 24 H -0.284 1.284 25 C -0.143 4.143 26 C 0.065 3.935 27 O -0.397 6.397 28 C 0.076 3.924 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.407 0.593 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.378 0.622 47 H 0.248 0.752 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.038 0.962 52 H 0.037 0.963 53 H 0.100 0.900 54 H 0.059 0.941 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 12.502 -9.783 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.111 4.111 6 C -0.121 4.121 7 H 0.118 0.882 8 C -0.184 4.184 9 C -0.216 4.216 10 H 0.160 0.840 11 C 0.320 3.680 12 O -0.479 6.479 13 N -0.341 5.341 14 C 0.001 3.999 15 C 0.097 3.903 16 N -0.352 5.352 17 C -0.347 4.347 18 H 0.080 0.920 19 C -0.250 4.250 20 N -0.607 5.607 21 Si 0.778 3.222 22 H -0.219 1.219 23 H -0.225 1.225 24 H -0.210 1.210 25 C -0.181 4.181 26 C -0.012 4.012 27 O -0.316 6.316 28 C -0.001 4.001 29 C -0.193 4.193 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.243 0.757 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.212 0.788 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.131 0.869 51 H 0.057 0.943 52 H 0.055 0.945 53 H 0.118 0.882 54 H 0.078 0.922 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.003 12.041 -10.618 17.514 hybrid contribution -1.645 -0.435 0.883 1.917 sum 5.359 11.605 -9.734 16.067 Atomic orbital electron populations 1.21879 0.94590 1.01438 1.01926 1.20504 0.95758 0.95796 0.94508 1.21838 1.01126 0.94317 1.02208 1.21948 1.01017 0.99869 0.97387 1.21298 1.00637 0.90678 0.98519 1.22458 1.00601 0.95330 0.93710 0.88240 1.23103 0.90352 1.02783 1.02174 1.22336 1.01641 0.91198 1.06464 0.84043 1.20209 0.75617 0.88009 0.84171 1.90607 1.54148 1.80146 1.22953 1.45683 1.65960 1.08808 1.13693 1.21620 0.99161 0.81340 0.97803 1.20006 0.90065 0.93180 0.87006 1.42480 1.07116 1.72698 1.12941 1.19163 0.86905 1.26852 1.01731 0.91952 1.25145 1.00255 1.02061 0.97511 1.69732 1.35100 1.46732 1.09102 0.85550 0.82741 0.77092 0.76785 1.21895 1.22513 1.20962 1.22301 0.95013 1.00429 1.00319 1.22584 1.01935 0.80927 0.95733 1.87807 1.29607 1.24586 1.89581 1.22374 0.84035 0.97112 0.96585 1.22458 1.00980 0.96873 0.98974 0.92165 0.92418 0.93634 0.92360 0.92208 0.92103 0.93781 0.92155 0.92593 0.90333 0.90901 0.90646 0.85810 0.75669 0.91896 0.94977 0.78810 0.94268 0.90181 0.89486 0.86916 0.94320 0.94470 0.88176 0.92190 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.23 71.98 0.59 -1.75 16 2 C -0.07 -1.06 0.80 -52.18 -0.04 -1.10 16 3 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.15 -2.58 8.23 71.98 0.59 -1.99 16 5 C -0.07 -1.30 4.55 30.59 0.14 -1.16 16 6 C -0.10 -2.45 3.77 -10.79 -0.04 -2.49 16 7 H 0.10 2.84 5.58 -2.39 -0.01 2.82 16 8 C -0.15 -3.76 9.88 30.59 0.30 -3.46 16 9 C -0.20 -5.33 5.91 -11.54 -0.07 -5.39 16 10 H 0.14 3.16 8.14 -2.38 -0.02 3.14 16 11 C 0.53 18.93 7.61 87.66 0.67 19.59 16 12 O -0.60 -25.28 16.26 -3.02 -0.05 -25.33 16 13 N -0.69 -24.14 5.13 -463.08 -2.38 -26.52 16 14 C 0.13 4.62 4.32 86.38 0.37 4.99 16 15 C 0.19 6.49 0.41 3.72 0.00 6.49 16 16 N -0.71 -30.29 3.67 -302.80 -1.11 -31.40 16 17 C -0.21 -10.69 8.70 84.03 0.73 -9.96 16 18 H 0.06 3.18 6.76 -2.91 -0.02 3.16 16 19 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 20 N -0.96 -53.51 13.07 21.65 0.28 -53.22 16 21 Si 0.95 44.99 29.55 68.60 2.03 47.02 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 C -0.14 -4.02 4.80 30.68 0.15 -3.88 16 26 C 0.06 1.87 6.67 72.01 0.48 2.35 16 27 O -0.40 -12.73 10.77 -148.98 -1.60 -14.34 16 28 C 0.08 2.49 6.68 72.01 0.48 2.97 16 29 C -0.15 -5.07 4.83 30.68 0.15 -4.92 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.89 7.20 -2.39 -0.02 0.87 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.95 6.14 -2.39 -0.01 0.93 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.21 7.88 -2.39 -0.02 1.19 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.12 2.58 8.03 -2.39 -0.02 2.56 16 43 H 0.41 13.73 7.41 -92.71 -0.69 13.04 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.03 1.37 7.53 -2.39 -0.02 1.35 16 46 H 0.38 17.30 6.71 -92.71 -0.62 16.68 16 47 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 48 H 0.08 2.12 7.36 -2.39 -0.02 2.10 16 49 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 51 H 0.04 1.28 7.08 -2.39 -0.02 1.27 16 52 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 53 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 54 H 0.06 2.18 7.15 -2.39 -0.02 2.16 16 55 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -62.09 422.14 2.31 -59.78 By element: Atomic # 1 Polarization: 47.85 SS G_CDS: -0.44 Total: 47.40 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.58 Total: -3.39 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.21 Total: -111.14 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.65 Total: -39.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -62.09 2.31 -59.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724357439.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.974 kcal (2) G-P(sol) polarization free energy of solvation -62.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds