Wall clock time and date at job start Tue Mar 31 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 C 1.52995 * 109.47256 * 239.99608 * 2 1 3 5 5 C 1.53001 * 109.47271 * 119.99938 * 2 1 3 6 6 C 1.52994 * 109.47249 * 59.99591 * 5 2 1 7 7 H 1.09000 * 115.56058 * 29.31902 * 6 5 2 8 8 C 1.52999 * 117.50251 * 243.62327 * 6 5 2 9 9 C 1.53002 * 117.49924 * 174.99795 * 6 5 2 10 10 H 1.09005 * 117.51598 * 0.02562 * 9 6 5 11 11 C 1.50697 * 117.50408 * 214.98145 * 9 6 5 12 12 O 1.21286 * 119.99684 * 359.97438 * 11 9 6 13 13 N 1.34775 * 120.00692 * 179.97438 * 11 9 6 14 14 C 1.46491 * 120.00230 * 185.07069 * 13 11 9 15 15 C 1.52995 * 109.50334 * 57.00103 * 14 13 11 16 16 O 1.42904 * 109.46704 * 54.78026 * 15 14 13 17 17 C 1.53040 * 109.49854 * 296.93474 * 14 13 11 18 18 C 1.53042 * 109.53923 * 301.38941 * 17 14 13 19 19 C 1.53198 * 109.31067 * 298.62748 * 18 17 14 20 20 N 1.46928 * 108.77253 * 54.63421 * 19 18 17 21 21 C 1.36938 * 120.62601 * 126.40857 * 20 19 18 22 22 H 1.07997 * 120.00900 * 329.45424 * 21 20 19 23 23 C 1.38819 * 119.99617 * 149.44708 * 21 20 19 24 24 N 1.31622 * 120.00093 * 348.47550 * 23 21 20 25 25 Si 1.86802 * 120.00008 * 168.46510 * 23 21 20 26 26 H 1.48500 * 109.46557 * 90.00345 * 25 23 21 27 27 H 1.48494 * 109.47075 * 210.00187 * 25 23 21 28 28 H 1.48498 * 109.47378 * 330.00631 * 25 23 21 29 29 C 1.46926 * 118.74164 * 306.39277 * 20 19 18 30 30 H 1.09005 * 109.47049 * 300.00383 * 1 2 3 31 31 H 1.08997 * 109.46852 * 60.00158 * 1 2 3 32 32 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47180 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46585 * 299.99870 * 3 2 1 35 35 H 1.08993 * 109.47135 * 59.99609 * 3 2 1 36 36 H 1.09001 * 109.47606 * 300.00499 * 4 2 1 37 37 H 1.09009 * 109.46974 * 59.99960 * 4 2 1 38 38 H 1.09001 * 109.47661 * 179.97438 * 4 2 1 39 39 H 1.09005 * 109.46822 * 299.99819 * 5 2 1 40 40 H 1.09002 * 109.47198 * 180.02562 * 5 2 1 41 41 H 1.08997 * 117.50043 * 145.01853 * 8 6 5 42 42 H 1.09001 * 117.51960 * 359.97438 * 8 6 5 43 43 H 0.97005 * 119.99391 * 5.06342 * 13 11 9 44 44 H 1.09003 * 109.47525 * 174.77767 * 15 14 13 45 45 H 1.08998 * 109.47058 * 294.78321 * 15 14 13 46 46 H 0.96702 * 113.99804 * 179.97438 * 16 15 14 47 47 H 1.09010 * 109.45922 * 61.40304 * 17 14 13 48 48 H 1.08994 * 109.46697 * 181.36315 * 17 14 13 49 49 H 1.08996 * 109.50090 * 58.57925 * 18 17 14 50 50 H 1.09000 * 109.49940 * 178.68537 * 18 17 14 51 51 H 1.09001 * 109.58886 * 294.85529 * 19 18 17 52 52 H 1.08999 * 109.70436 * 174.49233 * 19 18 17 53 53 H 0.97000 * 120.00086 * 180.02562 * 24 23 21 54 54 H 1.08999 * 109.58592 * 293.82116 * 29 20 19 55 55 H 1.09005 * 109.58687 * 173.39061 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2494 7 1 1.3622 -2.6032 0.2661 8 6 0.5861 -2.5792 2.3795 9 6 2.0285 -3.0892 2.3611 10 1 2.7196 -2.6706 3.0928 11 6 2.2497 -4.5386 2.0130 12 8 2.0327 -4.9316 0.8863 13 7 2.6886 -5.3983 2.9536 14 6 3.0097 -6.7805 2.5900 15 6 4.0665 -6.7854 1.4838 16 8 5.2007 -6.0251 1.9053 17 6 1.7455 -7.4845 2.0918 18 6 0.6761 -7.4513 3.1861 19 6 1.1909 -8.1986 4.4203 20 7 2.4810 -7.6199 4.8195 21 6 2.6825 -7.1820 6.1013 22 1 1.8545 -6.7935 6.6757 23 6 3.9510 -7.2375 6.6623 24 7 4.9080 -7.9112 6.0602 25 14 4.2998 -6.3556 8.2717 26 1 4.0282 -7.2728 9.4076 27 1 5.7229 -5.9330 8.3062 28 1 3.4256 -5.1602 8.3808 29 6 3.5510 -7.5203 3.8175 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6767 -0.2073 2.1392 40 1 3.1301 -0.7208 1.2495 41 1 -0.2029 -3.2920 2.1398 42 1 0.3285 -1.8253 3.1234 43 1 2.7920 -5.1016 3.8714 44 1 4.3728 -7.8112 1.2782 45 1 3.6482 -6.3430 0.5797 46 1 5.9124 -5.9853 1.2518 47 1 1.3720 -6.9746 1.2036 48 1 1.9798 -8.5198 1.8443 49 1 0.4591 -6.4167 3.4515 50 1 -0.2319 -7.9322 2.8222 51 1 1.3225 -9.2537 4.1802 52 1 0.4761 -8.0960 5.2368 53 1 5.7943 -7.9503 6.4525 54 1 3.8749 -8.5200 3.5283 55 1 4.3926 -6.9678 4.2353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733589867.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:47 Heat of formation + Delta-G solvation = -79.507543 kcal Electronic energy + Delta-G solvation = -31967.770920 eV Core-core repulsion = 28004.505528 eV Total energy + Delta-G solvation = -3963.265391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51195 -39.87526 -38.57801 -37.38681 -36.38455 -35.32225 -34.16443 -32.01988 -31.40502 -28.55089 -28.10575 -28.04087 -27.32744 -26.64561 -25.14060 -23.96625 -22.44460 -21.98054 -20.92349 -20.12170 -19.55142 -18.79391 -18.22707 -18.16104 -16.96935 -16.48918 -16.13022 -15.99694 -15.79422 -15.45406 -15.41891 -15.17090 -15.01262 -14.73396 -14.64019 -14.20222 -14.14535 -13.93288 -13.89519 -13.48689 -13.14282 -13.08031 -13.04419 -12.88603 -12.71261 -12.57728 -12.53309 -12.53034 -12.34225 -12.22007 -11.97833 -11.84722 -11.68494 -11.59687 -11.49361 -11.30150 -11.23052 -11.11353 -10.91827 -10.81246 -10.53995 -10.33002 -9.75872 -8.62192 -7.83849 -5.34306 1.48876 1.50606 1.59205 1.68602 2.34974 2.52497 2.95676 3.31592 3.33894 3.62392 3.68013 3.79367 3.89047 4.01893 4.08610 4.10542 4.15203 4.23309 4.25187 4.35330 4.37024 4.47091 4.50459 4.62093 4.72760 4.75878 4.79844 4.81755 4.84354 4.88429 4.94325 4.94819 4.97966 4.99391 5.01508 5.08259 5.11967 5.14701 5.18794 5.20173 5.29012 5.33587 5.39464 5.48290 5.48964 5.57655 5.61086 5.64609 5.76537 5.81499 6.43077 6.83542 6.90828 7.16676 7.44366 7.85508 8.39984 9.21389 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003270 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.825358 B = 8560.123957 C = 9205.046139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.076 4.076 6 C -0.102 4.102 7 H 0.104 0.896 8 C -0.136 4.136 9 C -0.204 4.204 10 H 0.125 0.875 11 C 0.543 3.457 12 O -0.581 6.581 13 N -0.684 5.684 14 C 0.160 3.840 15 C 0.075 3.925 16 O -0.577 6.577 17 C -0.114 4.114 18 C -0.114 4.114 19 C 0.140 3.860 20 N -0.603 5.603 21 C -0.260 4.260 22 H 0.068 0.932 23 C -0.043 4.043 24 N -0.931 5.931 25 Si 0.964 3.036 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.266 1.266 29 C 0.192 3.808 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.401 0.599 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.387 0.613 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.076 0.924 51 H 0.014 0.986 52 H 0.056 0.944 53 H 0.249 0.751 54 H 0.002 0.998 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 14.734 -12.301 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.113 4.113 6 C -0.121 4.121 7 H 0.122 0.878 8 C -0.174 4.174 9 C -0.225 4.225 10 H 0.143 0.857 11 C 0.331 3.669 12 O -0.463 6.463 13 N -0.332 5.332 14 C 0.072 3.928 15 C -0.004 4.004 16 O -0.384 6.384 17 C -0.153 4.153 18 C -0.153 4.153 19 C 0.014 3.986 20 N -0.326 5.326 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.239 4.239 24 N -0.577 5.577 25 Si 0.793 3.207 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.190 1.190 29 C 0.066 3.934 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.140 0.860 43 H 0.236 0.764 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.236 0.764 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.032 0.968 52 H 0.074 0.926 53 H 0.058 0.942 54 H 0.020 0.980 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.262 14.479 -12.466 20.440 hybrid contribution 1.163 -0.368 0.912 1.523 sum -6.100 14.111 -11.554 19.231 Atomic orbital electron populations 1.21860 0.94116 1.01704 1.01930 1.20495 0.96091 0.95525 0.94368 1.21849 1.00920 0.94629 1.02234 1.21943 1.00747 1.00061 0.97401 1.21287 1.00191 0.91296 0.98552 1.22416 1.00842 0.94853 0.93969 0.87834 1.23127 0.89967 1.02685 1.01592 1.22337 1.01871 0.91817 1.06519 0.85727 1.19971 0.75408 0.87264 0.84236 1.90532 1.54010 1.79411 1.22311 1.45747 1.65306 1.10247 1.11881 1.21019 0.93697 0.82548 0.95574 1.22470 0.86437 0.94724 0.96742 1.86527 1.29440 1.75001 1.47416 1.21700 0.94926 0.99745 0.98895 1.21772 0.97504 1.00493 0.95535 1.21097 0.87726 0.94221 0.95540 1.44210 1.10465 1.70820 1.07146 1.19425 0.94634 1.34371 0.90570 0.91458 1.25839 0.97573 0.99768 1.00765 1.70127 1.02716 1.43648 1.41162 0.85324 0.76666 0.78724 0.79998 1.21534 1.22336 1.19049 1.20655 0.91414 0.95222 0.86158 0.92131 0.92434 0.93154 0.92801 0.92096 0.92101 0.93424 0.92092 0.93116 0.90481 0.91874 0.89359 0.85980 0.76413 0.93116 0.92340 0.76443 0.91039 0.91774 0.93079 0.90520 0.96820 0.92557 0.94221 0.97986 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.23 71.98 0.59 -1.47 16 2 C -0.06 -1.02 0.80 -52.18 -0.04 -1.06 16 3 C -0.14 -1.82 8.47 71.98 0.61 -1.21 16 4 C -0.14 -2.52 8.23 71.98 0.59 -1.93 16 5 C -0.08 -1.36 4.55 30.59 0.14 -1.22 16 6 C -0.10 -2.31 3.77 -10.79 -0.04 -2.35 16 7 H 0.10 2.72 5.58 -2.39 -0.01 2.71 16 8 C -0.14 -3.00 9.88 30.60 0.30 -2.70 16 9 C -0.20 -5.52 5.91 -11.54 -0.07 -5.59 16 10 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 11 C 0.54 18.68 7.02 87.66 0.62 19.29 16 12 O -0.58 -22.03 12.57 -3.05 -0.04 -22.07 16 13 N -0.68 -25.61 3.95 -422.59 -1.67 -27.28 16 14 C 0.16 6.26 0.45 3.68 0.00 6.26 16 15 C 0.08 2.72 5.59 71.98 0.40 3.12 16 16 O -0.58 -20.84 13.08 -148.98 -1.95 -22.78 16 17 C -0.11 -4.11 4.52 30.62 0.14 -3.97 16 18 C -0.11 -4.00 5.93 30.67 0.18 -3.82 16 19 C 0.14 5.74 6.52 86.36 0.56 6.30 16 20 N -0.60 -29.26 2.85 -699.06 -2.00 -31.25 16 21 C -0.26 -13.67 9.59 84.03 0.81 -12.86 16 22 H 0.07 3.45 7.85 -2.91 -0.02 3.42 16 23 C -0.04 -2.35 5.03 84.86 0.43 -1.93 16 24 N -0.93 -53.99 11.04 21.65 0.24 -53.76 16 25 Si 0.96 43.75 29.57 68.60 2.03 45.78 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 27 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 C 0.19 9.16 3.82 86.36 0.33 9.49 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.85 7.20 -2.39 -0.02 0.83 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.97 6.14 -2.39 -0.01 0.96 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.21 7.88 -2.38 -0.02 1.19 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.12 2.12 8.03 -2.39 -0.02 2.11 16 43 H 0.40 16.05 8.43 -92.70 -0.78 15.27 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 2.11 6.30 -2.39 -0.02 2.10 16 46 H 0.39 9.93 9.12 -74.06 -0.68 9.26 16 47 H 0.07 2.60 6.27 -2.38 -0.01 2.59 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.05 1.86 7.53 -2.39 -0.02 1.85 16 50 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 53 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 54 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 55 H 0.07 3.92 5.91 -2.38 -0.01 3.91 16 Total: -1.00 -64.09 417.31 1.58 -62.51 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.59 Total: 44.48 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.55 Total: 4.38 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -3.42 Total: -112.29 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.99 Total: -44.86 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.09 1.58 -62.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733589867.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.000 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds