Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00092 * 2 1 4 4 C 1.52994 * 109.47447 * 125.00159 * 3 2 1 5 5 C 1.52996 * 109.47299 * 59.99729 * 4 3 2 6 6 C 1.53005 * 109.47012 * 299.99807 * 4 3 2 7 7 C 1.50703 * 109.47397 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99818 * 6.47082 * 7 4 3 9 9 N 1.34778 * 120.00037 * 186.47499 * 7 4 3 10 10 C 1.46924 * 120.63168 * 175.09828 * 9 7 4 11 11 C 1.53188 * 108.89529 * 126.45926 * 10 9 7 12 12 C 1.53041 * 109.31480 * 54.56323 * 11 10 9 13 13 O 1.42895 * 109.46290 * 178.62890 * 12 11 10 14 14 C 1.42900 * 114.00351 * 210.00007 * 13 12 11 15 15 C 1.52988 * 109.47369 * 179.97438 * 14 13 12 16 16 C 1.53007 * 109.47167 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47021 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00072 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99998 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00617 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99350 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00549 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46943 * 60.00006 * 22 20 18 24 24 H 1.48494 * 109.47387 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47079 * 300.00337 * 22 20 18 26 26 C 1.53044 * 109.53616 * 298.63569 * 12 11 10 27 27 C 1.46965 * 120.65194 * 354.90609 * 9 7 4 28 28 H 1.07999 * 120.00209 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99919 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99919 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46963 * 4.99919 * 3 2 1 32 32 H 1.09001 * 109.47113 * 245.00307 * 3 2 1 33 33 H 1.09001 * 109.47265 * 172.36793 * 5 4 3 34 34 H 1.09000 * 109.47280 * 292.37010 * 5 4 3 35 35 H 1.08999 * 109.46995 * 52.36897 * 5 4 3 36 36 H 1.09002 * 109.46999 * 318.78049 * 6 4 3 37 37 H 1.08999 * 109.46962 * 78.77186 * 6 4 3 38 38 H 1.08993 * 109.47183 * 198.77184 * 6 4 3 39 39 H 1.08996 * 109.58497 * 6.59615 * 10 9 7 40 40 H 1.09006 * 109.58366 * 246.31681 * 10 9 7 41 41 H 1.08995 * 109.49630 * 174.51495 * 11 10 9 42 42 H 1.08994 * 109.49726 * 294.57940 * 11 10 9 43 43 H 1.09000 * 109.46113 * 58.64978 * 12 11 10 44 44 H 1.08999 * 109.46734 * 300.00054 * 14 13 12 45 45 H 1.09002 * 109.46769 * 59.99455 * 14 13 12 46 46 H 1.08999 * 109.47325 * 299.99799 * 15 14 13 47 47 H 1.09002 * 109.47533 * 60.00029 * 15 14 13 48 48 H 1.09001 * 109.46664 * 299.99557 * 16 15 14 49 49 H 1.08994 * 109.46857 * 60.00225 * 16 15 14 50 50 H 0.97001 * 120.00084 * 0.02562 * 17 16 15 51 51 H 0.97008 * 119.99638 * 180.02562 * 21 20 18 52 52 H 1.08997 * 109.49662 * 181.31498 * 26 12 11 53 53 H 1.09000 * 109.49903 * 301.38058 * 26 12 11 54 54 H 1.09001 * 109.46052 * 113.75451 * 27 9 7 55 55 H 1.08996 * 109.71568 * 353.47536 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1815 5 6 4.0245 0.1729 1.0559 6 6 2.2521 1.1963 2.4889 7 6 3.7882 2.6384 1.1819 8 8 3.4886 3.5115 0.3951 9 7 4.7945 2.8356 2.0564 10 6 5.6074 4.0582 1.9991 11 6 5.6079 4.7188 3.3812 12 6 6.0732 3.7035 4.4274 13 8 6.1054 4.3257 5.7134 14 6 7.0934 3.7880 6.5947 15 6 7.0380 4.5257 7.9338 16 6 8.0964 3.9504 8.8772 17 7 8.0437 4.6573 10.1593 18 6 8.9039 4.3121 11.1674 19 1 9.6214 3.5190 11.0171 20 6 8.8544 4.9822 12.3820 21 7 7.9803 5.9490 12.5650 22 14 10.0283 4.5117 13.7569 23 1 11.4281 4.7017 13.2991 24 1 9.7733 5.3706 14.9411 25 1 9.8162 3.0884 14.1234 26 6 5.1037 2.5197 4.4583 27 6 5.0974 1.8340 3.0884 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 4.7972 0.2701 1.8185 34 1 3.4968 -0.7711 1.1916 35 1 4.4846 0.1931 0.0679 36 1 1.3449 1.7979 2.4338 37 1 1.9858 0.1509 2.6453 38 1 2.8678 1.5424 3.3191 39 1 5.1837 4.7446 1.2660 40 1 6.6288 3.8048 1.7148 41 1 6.2857 5.5724 3.3761 42 1 4.6002 5.0559 3.6236 43 1 7.0713 3.3487 4.1705 44 1 6.8986 2.7277 6.7553 45 1 8.0817 3.9129 6.1520 46 1 7.2331 5.5860 7.7729 47 1 6.0499 4.4013 8.3767 48 1 7.9017 2.8901 9.0383 49 1 9.0844 4.0754 8.4342 50 1 7.3991 5.3694 10.2945 51 1 7.9460 6.4176 13.4138 52 1 5.4226 1.8080 5.2198 53 1 4.1006 2.8769 4.6914 54 1 6.0769 1.3971 2.8940 55 1 4.3390 1.0513 3.0750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755347499.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -73.632520 kcal Electronic energy + Delta-G solvation = -29701.777318 eV Core-core repulsion = 25738.766687 eV Total energy + Delta-G solvation = -3963.010631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93567 -39.78584 -37.90900 -37.62550 -36.82417 -34.48900 -33.98903 -32.66868 -31.96567 -31.21866 -28.33925 -27.68958 -27.14554 -26.12516 -24.50241 -24.23533 -23.29312 -22.44217 -21.62851 -20.31226 -19.74297 -19.12475 -17.98189 -17.52777 -17.18065 -16.83972 -16.59560 -16.49915 -16.01039 -15.75510 -15.53736 -15.41036 -15.25464 -15.20978 -14.87702 -14.68027 -14.35284 -14.05705 -13.86389 -13.53164 -13.39703 -13.34779 -13.16227 -12.94203 -12.89076 -12.74759 -12.56686 -12.44910 -12.43376 -12.23753 -12.10863 -12.07714 -11.97072 -11.86221 -11.83456 -11.74805 -11.49196 -11.47687 -10.93038 -10.66721 -10.34701 -10.17021 -9.76076 -9.02487 -7.95556 -5.25905 1.41384 1.48108 1.51950 1.54427 1.58210 1.95011 2.51153 2.66540 3.32940 3.38036 3.66889 3.72981 3.78268 3.86783 3.93984 3.97890 4.09338 4.10680 4.19646 4.23487 4.26772 4.29665 4.35240 4.37513 4.44465 4.57128 4.59001 4.64647 4.70436 4.72651 4.74315 4.76946 4.81312 4.81858 4.82542 4.91010 4.95507 4.99240 5.07124 5.11156 5.15615 5.19826 5.28550 5.33368 5.33522 5.35555 5.48697 5.49303 5.77487 5.93261 6.25545 6.33254 6.34743 7.09363 7.31881 8.07444 8.30292 9.28027 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.001597 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.431668 B =17531.744012 C =18020.178760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.068 4.068 4 C -0.071 4.071 5 C -0.159 4.159 6 C -0.150 4.150 7 C 0.519 3.481 8 O -0.586 6.586 9 N -0.608 5.608 10 C 0.116 3.884 11 C -0.126 4.126 12 C 0.086 3.914 13 O -0.403 6.403 14 C 0.078 3.922 15 C -0.114 4.114 16 C 0.156 3.844 17 N -0.750 5.750 18 C -0.252 4.252 19 H 0.080 0.920 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.275 1.275 26 C -0.157 4.157 27 C 0.090 3.910 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.029 0.971 49 H 0.026 0.974 50 H 0.373 0.627 51 H 0.252 0.748 52 H 0.094 0.906 53 H 0.061 0.939 54 H 0.096 0.904 55 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 -16.481 -29.128 34.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.105 4.105 4 C -0.074 4.074 5 C -0.216 4.216 6 C -0.207 4.207 7 C 0.309 3.691 8 O -0.466 6.466 9 N -0.340 5.340 10 C -0.006 4.006 11 C -0.164 4.164 12 C 0.029 3.971 13 O -0.323 6.323 14 C 0.001 3.999 15 C -0.152 4.152 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.383 4.383 19 H 0.098 0.902 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.201 1.201 26 C -0.195 4.195 27 C -0.031 4.031 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.204 0.796 51 H 0.060 0.940 52 H 0.112 0.888 53 H 0.080 0.920 54 H 0.114 0.886 55 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.074 -15.975 -29.420 34.960 hybrid contribution 0.236 0.736 0.958 1.231 sum -9.838 -15.239 -28.463 33.751 Atomic orbital electron populations 1.24004 0.96120 1.02247 1.00928 1.22931 0.95917 0.97893 0.99973 1.20555 0.97189 0.96031 0.96774 1.20724 0.96192 0.92342 0.98185 1.22390 0.98795 0.96782 1.03583 1.22165 0.99740 1.04319 0.94480 1.21203 0.79217 0.89453 0.79241 1.90661 1.67338 1.46744 1.41901 1.48197 1.32507 1.21055 1.32288 1.21562 0.96044 0.86532 0.96510 1.21914 1.02285 0.98756 0.93470 1.22191 0.99347 0.92843 0.82748 1.87919 1.57873 1.61589 1.24879 1.22351 0.91329 0.97294 0.88923 1.21485 0.99218 1.00183 0.94346 1.20671 0.96329 0.94905 0.85165 1.42604 1.42666 1.42630 1.11418 1.19663 1.11539 1.14362 0.92751 0.90228 1.25663 1.01550 0.99020 1.00755 1.69835 1.39953 1.27048 1.25336 0.85132 0.78533 0.77408 0.78199 1.20187 1.22179 1.20120 1.22462 1.00646 0.98262 0.98145 1.22550 1.04513 0.91094 0.84934 0.87021 0.89441 0.85329 0.92866 0.91642 0.89477 0.89068 0.92288 0.93134 0.88924 0.90942 0.90224 0.89108 0.89691 0.92696 0.90185 0.91593 0.91997 0.92552 0.92368 0.95355 0.95579 0.79598 0.93963 0.88799 0.91977 0.88567 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 14.32 67.78 0.97 -1.03 16 2 C -0.15 -1.50 8.04 25.64 0.21 -1.29 16 3 C -0.07 -0.99 3.95 29.84 0.12 -0.87 16 4 C -0.07 -0.89 0.52 -52.93 -0.03 -0.92 16 5 C -0.16 -1.10 7.62 71.98 0.55 -0.55 16 6 C -0.15 -1.59 7.47 71.98 0.54 -1.05 16 7 C 0.52 9.96 6.46 87.66 0.57 10.52 16 8 O -0.59 -16.35 15.40 -3.03 -0.05 -16.40 16 9 N -0.61 -9.26 2.97 -818.82 -2.43 -11.69 16 10 C 0.12 1.86 6.43 86.36 0.56 2.41 16 11 C -0.13 -2.25 5.73 30.67 0.18 -2.07 16 12 C 0.09 1.49 2.57 30.62 0.08 1.57 16 13 O -0.40 -10.05 9.99 -148.98 -1.49 -11.54 16 14 C 0.08 1.89 5.75 71.98 0.41 2.30 16 15 C -0.11 -3.76 5.70 30.59 0.17 -3.59 16 16 C 0.16 6.14 6.26 86.38 0.54 6.68 16 17 N -0.75 -39.13 5.60 -343.45 -1.92 -41.05 16 18 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 22 Si 0.98 46.05 29.55 68.60 2.03 48.07 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C -0.16 -2.13 5.52 30.67 0.17 -1.96 16 27 C 0.09 0.85 3.73 86.35 0.32 1.18 16 28 H 0.11 0.81 8.06 -2.91 -0.02 0.78 16 29 H 0.09 1.02 7.84 -2.91 -0.02 0.99 16 30 H 0.13 0.81 6.99 -2.91 -0.02 0.79 16 31 H 0.05 0.99 7.67 -2.39 -0.02 0.97 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.09 0.41 4.36 -2.39 -0.01 0.40 16 34 H 0.09 0.31 6.76 -2.39 -0.02 0.29 16 35 H 0.06 0.48 8.13 -2.39 -0.02 0.46 16 36 H 0.05 0.68 7.99 -2.39 -0.02 0.67 16 37 H 0.09 0.61 7.66 -2.39 -0.02 0.59 16 38 H 0.07 0.74 4.89 -2.39 -0.01 0.73 16 39 H 0.08 1.59 7.00 -2.39 -0.02 1.57 16 40 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 44 H 0.07 1.36 7.84 -2.39 -0.02 1.35 16 45 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 50 H 0.37 20.83 7.67 -92.71 -0.71 20.12 16 51 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 52 H 0.09 1.08 7.84 -2.39 -0.02 1.07 16 53 H 0.06 1.05 7.84 -2.39 -0.02 1.03 16 54 H 0.10 0.54 7.95 -2.39 -0.02 0.52 16 55 H 0.13 0.82 3.01 -2.39 -0.01 0.81 16 Total: -1.00 -73.72 420.08 3.22 -70.50 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.14 Total: 28.28 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 6.66 Total: -6.10 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -4.07 Total: -112.82 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.53 Total: -27.94 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.72 3.22 -70.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755347499.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.129 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds