Wall clock time and date at job start Tue Mar 31 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.53004 * 109.46921 * 174.99532 * 3 2 1 5 5 C 1.53004 * 109.46899 * 185.00103 * 4 3 2 6 6 N 1.46494 * 109.47293 * 294.99958 * 3 2 1 7 7 C 1.46765 * 124.35223 * 119.99885 * 6 3 2 8 8 C 1.54482 * 105.47343 * 163.00287 * 7 6 3 9 9 H 1.08998 * 110.96671 * 143.57184 * 8 7 6 10 10 C 1.50699 * 110.97160 * 267.29669 * 8 7 6 11 11 O 1.21284 * 119.99958 * 44.16601 * 10 8 7 12 12 N 1.34776 * 119.99999 * 224.16357 * 10 8 7 13 13 C 1.46500 * 119.99973 * 190.60375 * 12 10 8 14 14 C 1.50694 * 109.47339 * 270.00315 * 13 12 10 15 15 H 1.07996 * 119.99781 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99798 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47664 * 60.00015 * 18 16 14 20 20 H 1.48505 * 109.47323 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47369 * 299.99974 * 18 16 14 22 22 C 1.46496 * 120.00045 * 10.60617 * 12 10 8 23 23 C 1.52993 * 109.47258 * 263.20735 * 22 12 10 24 24 C 1.53009 * 109.47131 * 59.47863 * 23 22 12 25 25 C 1.52997 * 109.47329 * 179.47635 * 23 22 12 26 26 C 1.54628 * 101.76340 * 25.41668 * 8 7 6 27 27 C 1.34422 * 124.35002 * 300.02244 * 6 3 2 28 28 O 1.21288 * 124.93891 * 0.42363 * 27 6 3 29 29 H 1.09000 * 109.46962 * 60.00411 * 1 2 3 30 30 H 1.09007 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47704 * 299.99983 * 1 2 3 32 32 H 1.09000 * 109.47704 * 240.00017 * 2 1 3 33 33 H 1.09000 * 109.47298 * 120.00017 * 2 1 3 34 34 H 1.09002 * 109.47205 * 55.00438 * 3 2 1 35 35 H 1.08992 * 109.47379 * 305.00128 * 4 3 2 36 36 H 1.08997 * 109.46983 * 65.00788 * 4 3 2 37 37 H 1.08997 * 109.47198 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47046 * 300.00247 * 5 4 3 39 39 H 1.09004 * 109.47430 * 60.00037 * 5 4 3 40 40 H 1.08998 * 110.24367 * 44.00484 * 7 6 3 41 41 H 1.09001 * 110.24412 * 282.00918 * 7 6 3 42 42 H 1.09005 * 109.46928 * 30.00605 * 13 12 10 43 43 H 1.08998 * 109.47159 * 149.99837 * 13 12 10 44 44 H 0.97003 * 119.99174 * 179.97438 * 17 16 14 45 45 H 1.09003 * 109.46996 * 23.20856 * 22 12 10 46 46 H 1.08999 * 109.46908 * 143.20622 * 22 12 10 47 47 H 1.08996 * 109.47167 * 299.47627 * 23 22 12 48 48 H 1.08997 * 109.46528 * 309.12015 * 24 23 22 49 49 H 1.08997 * 109.46787 * 69.12137 * 24 23 22 50 50 H 1.09002 * 109.46710 * 189.12293 * 24 23 22 51 51 H 1.08995 * 109.47442 * 60.00068 * 25 23 22 52 52 H 1.08999 * 109.47744 * 180.02562 * 25 23 22 53 53 H 1.09006 * 109.47735 * 300.00177 * 25 23 22 54 54 H 1.09000 * 110.48458 * 93.87904 * 26 8 7 55 55 H 1.09002 * 110.48552 * 216.51607 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0644 2.8850 0.2513 6 7 1.6524 2.0975 -1.2517 7 6 0.8075 3.2948 -1.3329 8 6 1.0287 3.8598 -2.7536 9 1 0.1051 4.2758 -3.1560 10 6 2.1284 4.8902 -2.7591 11 8 3.1579 4.6816 -2.1527 12 7 1.9679 6.0434 -3.4378 13 6 3.1092 6.9395 -3.6396 14 6 3.1886 7.9173 -2.4957 15 1 2.4614 7.8757 -1.6984 16 6 4.1891 8.8657 -2.4677 17 7 5.0742 8.9166 -3.4390 18 14 4.2871 10.0781 -1.0501 19 1 4.4601 9.3365 0.2247 20 1 5.4433 10.9872 -1.2553 21 1 3.0355 10.8753 -0.9930 22 6 0.6522 6.4009 -3.9737 23 6 0.5735 5.9939 -5.4464 24 6 0.7940 4.4849 -5.5710 25 6 -0.8051 6.3555 -6.0026 26 6 1.4526 2.5939 -3.5338 27 6 2.0246 1.6788 -2.4737 28 8 2.7176 0.7082 -2.6942 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6054 1.9815 0.8419 35 1 3.8570 0.8800 1.0114 36 1 4.0029 0.9836 -0.7595 37 1 5.1507 2.8864 0.3405 38 1 3.7722 3.4493 -0.6343 39 1 3.6262 3.3458 1.1366 40 1 1.1153 4.0250 -0.5844 41 1 -0.2398 3.0276 -1.1919 42 1 4.0277 6.3541 -3.6818 43 1 2.9824 7.4843 -4.5752 44 1 5.7778 9.5840 -3.4194 45 1 -0.1229 5.8806 -3.4110 46 1 0.5043 7.4773 -3.8858 47 1 1.3426 6.5213 -6.0107 48 1 1.6992 4.2045 -5.0325 49 1 -0.0597 3.9568 -5.1465 50 1 0.8997 4.2189 -6.6227 51 1 -0.9623 7.4304 -5.9139 52 1 -0.8614 6.0651 -7.0517 53 1 -1.5744 5.8281 -5.4384 54 1 0.5878 2.1320 -4.0102 55 1 2.2121 2.8397 -4.2760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728611410.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:24 Heat of formation + Delta-G solvation = -99.675093 kcal Electronic energy + Delta-G solvation = -32699.202102 eV Core-core repulsion = 28735.062180 eV Total energy + Delta-G solvation = -3964.139922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16208 -40.39948 -37.77110 -37.51552 -36.65937 -35.32513 -34.02759 -32.97370 -32.09647 -29.75896 -28.69050 -27.89959 -27.24349 -26.80482 -25.40947 -23.20988 -22.94351 -22.85966 -21.31638 -19.84408 -19.64947 -18.68856 -18.47662 -17.76600 -17.18411 -16.68352 -16.42131 -16.19475 -15.79632 -15.59581 -15.40037 -15.18551 -14.72795 -14.66041 -14.40094 -14.36265 -14.04644 -13.94040 -13.84117 -13.76586 -13.42182 -13.36505 -13.24904 -12.94840 -12.83496 -12.75779 -12.64876 -12.55659 -12.46412 -12.34774 -12.17186 -12.06488 -11.96872 -11.83575 -11.74749 -11.71708 -11.60528 -11.58888 -11.35728 -10.62753 -10.51407 -10.37447 -9.53347 -9.31985 -8.19929 -6.33859 1.35701 1.39754 1.46588 1.61471 1.83894 2.15142 2.29447 2.45795 3.09734 3.31982 3.52473 3.58865 3.77132 3.88087 3.99464 4.04485 4.10922 4.16874 4.30971 4.36793 4.41302 4.49023 4.54207 4.58149 4.60113 4.63029 4.67098 4.76340 4.78371 4.82710 4.88973 4.92928 4.99291 5.02802 5.03338 5.08803 5.13473 5.16646 5.18331 5.22130 5.24858 5.26422 5.39713 5.42980 5.46900 5.55302 5.59073 5.65177 5.79228 5.93651 6.09933 6.26054 6.74099 6.87948 7.27165 7.32716 7.59355 8.86362 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.004338 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.895157 B = 6453.436235 C = 8278.255084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.159 3.841 4 C -0.130 4.130 5 C -0.164 4.164 6 N -0.597 5.597 7 C 0.118 3.882 8 C -0.116 4.116 9 H 0.156 0.844 10 C 0.502 3.498 11 O -0.575 6.575 12 N -0.597 5.597 13 C 0.270 3.730 14 C -0.532 4.532 15 H 0.055 0.945 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.258 1.258 22 C 0.109 3.891 23 C -0.114 4.114 24 C -0.157 4.157 25 C -0.135 4.135 26 C -0.132 4.132 27 C 0.514 3.486 28 O -0.578 6.578 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.128 0.872 42 H -0.012 1.012 43 H 0.017 0.983 44 H 0.265 0.735 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.040 0.960 48 H 0.039 0.961 49 H 0.090 0.910 50 H 0.057 0.943 51 H 0.051 0.949 52 H 0.061 0.939 53 H 0.080 0.920 54 H 0.153 0.847 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 -12.869 2.494 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.057 3.943 4 C -0.168 4.168 5 C -0.221 4.221 6 N -0.329 5.329 7 C -0.004 4.004 8 C -0.137 4.137 9 H 0.174 0.826 10 C 0.291 3.709 11 O -0.454 6.454 12 N -0.327 5.327 13 C 0.148 3.852 14 C -0.571 4.571 15 H 0.073 0.927 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.013 4.013 23 C -0.134 4.134 24 C -0.214 4.214 25 C -0.193 4.193 26 C -0.172 4.172 27 C 0.303 3.697 28 O -0.459 6.459 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.006 0.994 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.129 0.871 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.109 0.891 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.080 0.920 53 H 0.099 0.901 54 H 0.171 0.829 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.071 -13.371 2.718 22.643 hybrid contribution 1.522 1.194 0.319 1.960 sum -16.549 -12.176 3.037 20.769 Atomic orbital electron populations 1.21676 0.93793 1.02064 1.02264 1.21871 0.97747 0.94995 1.02619 1.21174 0.93713 0.94016 0.85398 1.21842 0.96253 0.96844 1.01906 1.21911 0.99743 0.97403 1.03025 1.48261 1.50179 1.28695 1.05808 1.22225 0.96628 0.86156 0.95422 1.22598 0.99560 0.93537 0.97985 0.82615 1.20957 0.88872 0.82760 0.78328 1.90616 1.32223 1.78967 1.43631 1.48140 1.11250 1.19854 1.53411 1.18569 0.83755 0.87521 0.95321 1.21660 1.12748 1.14856 1.07842 0.92702 1.25819 0.94988 0.99660 0.98706 1.70054 1.16534 1.36368 1.34179 0.85549 0.78227 0.78467 0.79056 1.20493 1.20790 1.18290 1.21900 0.83525 1.01419 0.94471 1.21502 0.98963 0.97416 0.95482 1.22310 1.02073 0.94855 1.02191 1.21716 0.94616 1.01623 1.01330 1.22536 1.04363 0.93379 0.96942 1.21164 0.78841 0.84247 0.85455 1.90634 1.40117 1.30526 1.84641 0.92940 0.92277 0.91333 0.93159 0.89769 0.87618 0.89593 0.93847 0.94731 0.91581 0.92534 0.91290 0.85478 0.99365 0.96522 0.92662 0.87066 0.91564 0.94117 0.94217 0.89109 0.92411 0.92983 0.92000 0.90076 0.82926 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.80 71.98 0.71 -1.37 16 2 C -0.13 -2.69 5.36 30.59 0.16 -2.53 16 3 C 0.16 3.71 2.25 44.99 0.10 3.81 16 4 C -0.13 -3.76 5.36 30.60 0.16 -3.60 16 5 C -0.16 -5.62 9.80 71.98 0.71 -4.91 16 6 N -0.60 -15.02 1.74 -794.03 -1.38 -16.39 16 7 C 0.12 2.38 6.58 86.83 0.57 2.95 16 8 C -0.12 -2.60 2.13 -10.48 -0.02 -2.62 16 9 H 0.16 2.17 4.35 -2.39 -0.01 2.16 16 10 C 0.50 18.56 5.39 87.66 0.47 19.04 16 11 O -0.57 -27.57 13.73 -3.04 -0.04 -27.61 16 12 N -0.60 -23.07 2.10 -826.18 -1.73 -24.80 16 13 C 0.27 14.18 5.11 85.63 0.44 14.62 16 14 C -0.53 -30.07 9.39 25.60 0.24 -29.83 16 15 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 16 C 0.01 0.39 5.46 84.66 0.46 0.85 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 18 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 22 C 0.11 2.94 4.89 86.38 0.42 3.36 16 23 C -0.11 -2.63 3.16 -10.79 -0.03 -2.66 16 24 C -0.16 -3.13 6.98 71.99 0.50 -2.63 16 25 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 26 C -0.13 -3.08 4.47 30.58 0.14 -2.95 16 27 C 0.51 15.55 7.37 87.89 0.65 16.20 16 28 O -0.58 -22.04 15.02 -3.05 -0.05 -22.09 16 29 H 0.05 0.79 7.75 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.33 6.62 -2.39 -0.02 1.31 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.54 6.65 -2.39 -0.02 1.52 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 2.75 4.83 -2.39 -0.01 2.74 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 40 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 42 H -0.01 -0.73 7.59 -2.38 -0.02 -0.75 16 43 H 0.02 0.91 8.01 -2.39 -0.02 0.89 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.11 2.01 5.89 -2.39 -0.01 1.99 16 46 H 0.07 1.99 8.12 -2.39 -0.02 1.98 16 47 H 0.04 1.22 8.08 -2.39 -0.02 1.20 16 48 H 0.04 1.03 3.34 -2.39 -0.01 1.02 16 49 H 0.09 1.11 6.47 -2.39 -0.02 1.10 16 50 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 54 H 0.15 2.17 7.85 -2.39 -0.02 2.15 16 55 H 0.09 2.48 6.15 -2.39 -0.01 2.46 16 Total: -1.00 -80.96 412.72 6.31 -74.65 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.86 Total: 19.51 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.34 Total: 6.25 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -2.83 Total: -97.63 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.96 6.31 -74.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728611410.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.021 kcal (2) G-P(sol) polarization free energy of solvation -80.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds