Wall clock time and date at job start Tue Mar 31 2020 22:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36943 * 120.00398 * 2 1 4 4 H 1.07992 * 120.00274 * 193.12422 * 3 2 1 5 5 C 1.38810 * 119.99537 * 13.12266 * 3 2 1 6 6 N 1.31622 * 120.00268 * 16.12655 * 5 3 2 7 7 Si 1.86799 * 119.99733 * 196.13322 * 5 3 2 8 8 H 1.48504 * 109.47470 * 90.00143 * 7 5 3 9 9 H 1.48507 * 109.46989 * 209.99666 * 7 5 3 10 10 H 1.48492 * 109.47373 * 329.99601 * 7 5 3 11 11 C 1.46508 * 120.00136 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.52251 * 179.91397 * 11 2 1 13 13 C 1.53039 * 109.49423 * 300.00006 * 11 2 1 14 14 C 1.53047 * 109.52317 * 181.32228 * 13 11 2 15 15 C 1.53194 * 109.31222 * 298.61435 * 14 13 11 16 16 N 1.46922 * 108.76668 * 54.65465 * 15 14 13 17 17 C 1.34772 * 120.62933 * 126.40922 * 16 15 14 18 18 O 1.21281 * 119.99928 * 175.17978 * 17 16 15 19 19 C 1.50700 * 119.99923 * 355.17398 * 17 16 15 20 20 C 1.52994 * 109.47109 * 301.54402 * 19 17 16 21 21 C 1.52999 * 109.47193 * 61.54639 * 19 17 16 22 22 C 1.53006 * 109.46907 * 181.54699 * 19 17 16 23 23 H 1.09005 * 109.48062 * 59.97849 * 22 19 17 24 24 C 1.53090 * 109.47767 * 180.02562 * 22 19 17 25 25 C 1.53183 * 109.16243 * 177.59134 * 24 22 19 26 26 C 1.53178 * 109.03613 * 303.01846 * 25 24 22 27 27 C 1.53096 * 109.16046 * 56.98010 * 26 25 24 28 28 O 1.42898 * 109.41488 * 302.38991 * 27 26 25 29 29 C 1.46931 * 118.73769 * 306.38322 * 16 15 14 30 30 H 1.09001 * 109.46709 * 274.14301 * 1 2 3 31 31 H 1.08991 * 109.47183 * 34.14282 * 1 2 3 32 32 H 1.08998 * 109.47066 * 154.14492 * 1 2 3 33 33 H 0.96992 * 120.00105 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.45923 * 301.33178 * 13 11 2 35 35 H 1.09001 * 109.46285 * 61.31140 * 13 11 2 36 36 H 1.08998 * 109.49636 * 58.58021 * 14 13 11 37 37 H 1.08996 * 109.49743 * 178.67420 * 14 13 11 38 38 H 1.09007 * 109.59268 * 294.86650 * 15 14 13 39 39 H 1.08999 * 109.58528 * 174.43804 * 15 14 13 40 40 H 1.09003 * 109.47213 * 48.66021 * 20 19 17 41 41 H 1.09006 * 109.47094 * 168.65641 * 20 19 17 42 42 H 1.09004 * 109.47692 * 288.65705 * 20 19 17 43 43 H 1.09004 * 109.46993 * 71.23055 * 21 19 17 44 44 H 1.08990 * 109.47117 * 191.22835 * 21 19 17 45 45 H 1.09001 * 109.46806 * 311.23535 * 21 19 17 46 46 H 1.09004 * 109.52289 * 297.49358 * 24 22 19 47 47 H 1.09000 * 109.52570 * 57.62569 * 24 22 19 48 48 H 1.08996 * 109.54467 * 62.88576 * 25 24 22 49 49 H 1.09005 * 109.54262 * 183.06198 * 25 24 22 50 50 H 1.08996 * 109.52098 * 176.88661 * 26 25 24 51 51 H 1.09002 * 109.51869 * 297.01239 * 26 25 24 52 52 H 1.08993 * 109.48319 * 62.37652 * 27 26 25 53 53 H 1.09003 * 109.47319 * 182.40163 * 27 26 25 54 54 H 1.08996 * 109.59205 * 293.81954 * 29 16 15 55 55 H 1.09008 * 109.58389 * 173.39398 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2085 1.1981 -0.2124 5 6 1.4829 2.3723 0.2729 6 7 0.2930 2.3443 0.8350 7 14 2.2741 4.0088 -0.1576 8 1 1.8868 4.3982 -1.5374 9 1 1.8130 5.0481 0.7978 10 1 3.7512 3.8813 -0.0754 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0706 -0.0020 13 6 1.8282 -2.0723 1.2485 14 6 2.6179 -3.3832 1.2653 15 6 2.2496 -4.2124 0.0309 16 7 2.4653 -3.3937 -1.1699 17 6 3.2356 -3.8451 -2.1795 18 8 3.3356 -3.1996 -3.2013 19 6 3.9728 -5.1519 -2.0385 20 6 4.9038 -5.0841 -0.8264 21 6 2.9656 -6.2874 -1.8452 22 6 4.7973 -5.4111 -3.3011 23 1 5.5147 -4.6020 -3.4392 24 6 5.5458 -6.7389 -3.1584 25 6 6.3208 -7.0205 -4.4493 26 6 5.3424 -7.0284 -5.6278 27 6 4.6018 -5.6893 -5.6751 28 8 3.9279 -5.4752 -4.4333 29 6 1.8247 -2.0738 -1.2495 30 1 -0.3633 0.0742 1.0250 31 1 -0.3633 0.8505 -0.5767 32 1 -0.3633 -0.9248 -0.4482 33 1 -0.1728 3.1733 1.0260 34 1 2.0698 -1.4914 2.1385 35 1 0.7606 -2.2917 1.2367 36 1 3.6857 -3.1649 1.2519 37 1 2.3721 -3.9444 2.1668 38 1 1.2020 -4.5080 0.0883 39 1 2.8801 -5.1004 -0.0142 40 1 4.3531 -4.7036 0.0339 41 1 5.2827 -6.0815 -0.6030 42 1 5.7389 -4.4190 -1.0463 43 1 2.4365 -6.4669 -2.7811 44 1 3.4925 -7.1934 -1.5461 45 1 2.2503 -6.0105 -1.0707 46 1 6.2419 -6.6766 -2.3218 47 1 4.8314 -7.5423 -2.9788 48 1 7.0694 -6.2431 -4.6021 49 1 6.8124 -7.9905 -4.3752 50 1 5.8930 -7.1732 -6.5573 51 1 4.6245 -7.8385 -5.4997 52 1 5.3168 -4.8842 -5.8442 53 1 3.8736 -5.7052 -6.4860 54 1 0.7425 -2.1950 -1.2965 55 1 2.1749 -1.5507 -2.1394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027414132.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:37 Heat of formation + Delta-G solvation = -67.114287 kcal Electronic energy + Delta-G solvation = -32323.667438 eV Core-core repulsion = 28360.939458 eV Total energy + Delta-G solvation = -3962.727979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.01641 -40.22003 -38.78508 -37.11395 -36.23898 -34.45809 -33.83130 -32.85727 -31.24222 -29.97899 -28.32660 -28.11574 -26.93742 -25.87923 -25.25488 -24.94382 -23.08260 -22.66428 -21.10849 -20.45397 -19.76155 -18.80758 -17.69354 -17.40511 -17.18996 -16.96165 -16.54996 -16.08724 -15.85152 -15.52437 -15.45807 -15.42747 -15.16371 -14.99738 -14.52214 -14.47911 -14.22002 -13.92135 -13.80181 -13.53946 -13.45784 -13.26094 -13.19455 -13.00321 -12.88174 -12.76206 -12.55289 -12.39546 -12.26829 -12.15814 -12.04144 -11.96757 -11.92162 -11.82999 -11.77287 -11.57253 -11.40327 -11.24168 -11.13579 -10.66147 -10.52445 -10.19601 -9.65917 -8.86002 -7.86068 -5.25629 1.42031 1.45321 1.52739 1.71400 2.00826 2.49121 2.82383 3.26424 3.43369 3.60103 3.63686 3.93233 3.96228 3.97860 4.00029 4.06890 4.10493 4.11435 4.16839 4.21829 4.32448 4.35703 4.37186 4.57233 4.62489 4.66926 4.68068 4.71680 4.76634 4.81609 4.84925 4.89674 4.91977 4.95636 4.97971 5.01770 5.04643 5.10307 5.13966 5.17575 5.20785 5.26441 5.34742 5.38116 5.45569 5.46693 5.50026 5.54732 5.61492 5.72273 6.27092 6.39354 6.54953 7.11611 7.27558 7.84889 8.24515 9.17585 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.002922 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.691364 B = 9581.601141 C =10363.971229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.290 1.290 9 H -0.290 1.290 10 H -0.271 1.271 11 C 0.171 3.829 12 H 0.045 0.955 13 C -0.123 4.123 14 C -0.125 4.125 15 C 0.083 3.917 16 N -0.605 5.605 17 C 0.513 3.487 18 O -0.582 6.582 19 C -0.066 4.066 20 C -0.158 4.158 21 C -0.151 4.151 22 C 0.113 3.887 23 H 0.032 0.968 24 C -0.144 4.144 25 C -0.123 4.123 26 C -0.149 4.149 27 C 0.054 3.946 28 O -0.389 6.389 29 C 0.114 3.886 30 H 0.003 0.997 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.248 0.752 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.035 0.965 53 H 0.091 0.909 54 H 0.059 0.941 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.544 -27.204 -3.582 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.336 5.336 3 C -0.391 4.391 4 H 0.084 0.916 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.794 3.206 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.196 1.196 11 C 0.063 3.937 12 H 0.063 0.937 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.038 4.038 16 N -0.338 5.338 17 C 0.302 3.698 18 O -0.462 6.462 19 C -0.069 4.069 20 C -0.215 4.215 21 C -0.208 4.208 22 C 0.055 3.945 23 H 0.050 0.950 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.186 4.186 27 C -0.022 4.022 28 O -0.309 6.309 29 C -0.011 4.011 30 H 0.021 0.979 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.103 0.897 51 H 0.093 0.907 52 H 0.053 0.947 53 H 0.109 0.891 54 H 0.077 0.923 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.293 -26.695 -4.055 28.897 hybrid contribution 0.127 2.102 -0.597 2.189 sum 10.420 -24.593 -4.652 27.111 Atomic orbital electron populations 1.20534 0.82355 0.95900 0.97497 1.44178 1.02308 1.01109 1.85993 1.19562 0.93633 0.85466 1.40472 0.91563 1.25547 0.98025 1.00907 1.00350 1.70281 1.15982 1.26175 1.45994 0.85280 0.78180 0.79916 0.77191 1.21706 1.21684 1.19629 1.20676 0.94693 0.85104 0.93259 0.93655 1.21933 1.00227 0.96506 0.97548 1.21966 1.00311 0.95169 0.98857 1.22700 1.03458 0.94893 0.82717 1.48174 1.48917 1.17565 1.19099 1.21304 0.78615 0.87879 0.81990 1.90669 1.64894 1.60315 1.30282 1.20844 0.96949 0.92170 0.96927 1.22345 0.98668 1.05165 0.95295 1.22244 0.98505 0.97004 1.03013 1.21858 0.90626 0.97064 0.84994 0.95043 1.22292 1.00091 0.96434 0.99313 1.21625 0.97524 1.02897 0.94044 1.22152 0.99168 0.97326 0.99980 1.22639 0.96804 0.96507 0.86296 1.87949 1.34356 1.93273 1.15283 1.21858 0.96693 0.83376 0.99185 0.97904 0.95655 0.95739 0.94226 0.93619 0.92534 0.91365 0.87440 0.90204 0.84500 0.89454 0.87316 0.92812 0.92970 0.87986 0.89953 0.88713 0.89429 0.92492 0.89323 0.89701 0.90712 0.94711 0.89093 0.92316 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 8.05 127.77 1.03 10.38 16 2 N -0.61 -32.01 2.82 -702.36 -1.98 -33.99 16 3 C -0.26 -15.10 9.71 84.03 0.82 -14.29 16 4 H 0.07 3.79 7.75 -2.91 -0.02 3.77 16 5 C -0.05 -3.13 5.08 84.86 0.43 -2.70 16 6 N -0.94 -56.64 10.34 21.65 0.22 -56.42 16 7 Si 0.97 47.13 29.58 68.60 2.03 49.16 16 8 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 C 0.17 7.18 2.74 45.07 0.12 7.30 16 12 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 13 C -0.12 -4.13 5.15 30.62 0.16 -3.97 16 14 C -0.12 -2.73 5.75 30.67 0.18 -2.55 16 15 C 0.08 1.69 3.90 86.36 0.34 2.03 16 16 N -0.60 -18.57 2.97 -818.89 -2.43 -21.00 16 17 C 0.51 16.75 6.35 87.66 0.56 17.30 16 18 O -0.58 -25.30 14.69 14.77 0.22 -25.08 16 19 C -0.07 -1.40 0.36 -52.93 -0.02 -1.42 16 20 C -0.16 -2.35 7.39 71.98 0.53 -1.81 16 21 C -0.15 -2.38 7.36 71.98 0.53 -1.85 16 22 C 0.11 2.57 1.43 30.63 0.04 2.61 16 23 H 0.03 0.87 8.11 -2.38 -0.02 0.85 16 24 C -0.14 -1.96 4.73 30.69 0.15 -1.81 16 25 C -0.12 -1.58 6.03 30.72 0.19 -1.39 16 26 C -0.15 -2.15 6.14 30.69 0.19 -1.96 16 27 C 0.05 1.18 6.84 72.01 0.49 1.68 16 28 O -0.39 -10.82 8.42 -131.18 -1.10 -11.93 16 29 C 0.11 4.51 5.77 86.36 0.50 5.01 16 30 H 0.00 0.15 7.66 -2.39 -0.02 0.13 16 31 H 0.02 1.43 6.65 -2.39 -0.02 1.41 16 32 H 0.02 1.09 6.35 -2.39 -0.02 1.07 16 33 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.91 7.72 -2.39 -0.02 1.89 16 36 H 0.07 1.49 7.42 -2.39 -0.02 1.48 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.48 8.13 -2.38 -0.02 1.47 16 39 H 0.14 1.88 2.86 -2.39 -0.01 1.88 16 40 H 0.09 1.24 3.91 -2.39 -0.01 1.23 16 41 H 0.11 0.82 6.98 -2.38 -0.02 0.80 16 42 H 0.05 0.93 8.10 -2.38 -0.02 0.92 16 43 H 0.05 1.06 7.37 -2.38 -0.02 1.05 16 44 H 0.10 0.91 6.86 -2.39 -0.02 0.89 16 45 H 0.08 1.15 4.74 -2.39 -0.01 1.14 16 46 H 0.09 0.92 6.84 -2.38 -0.02 0.90 16 47 H 0.09 1.01 6.58 -2.39 -0.02 0.99 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16 53 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 54 H 0.06 2.32 6.49 -2.39 -0.02 2.30 16 55 H 0.05 2.32 7.04 -2.38 -0.02 2.30 16 Total: -1.00 -77.72 391.74 4.05 -73.68 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.87 Total: 13.02 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.22 Total: 12.56 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.19 Total: -111.41 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.89 Total: -37.01 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.72 4.05 -73.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027414132.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.564 kcal (2) G-P(sol) polarization free energy of solvation -77.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds