Wall clock time and date at job start Tue Mar 31 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00050 * 2 1 4 4 C 1.52999 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46839 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47355 * 59.99691 * 5 4 3 7 7 C 1.53001 * 109.47177 * 299.99658 * 5 4 3 8 8 C 1.50701 * 109.47020 * 179.97438 * 5 4 3 9 9 O 1.21280 * 120.00007 * 8.41982 * 8 5 4 10 10 N 1.34777 * 119.99978 * 188.42030 * 8 5 4 11 11 C 1.48118 * 127.84136 * 355.37478 * 10 8 5 12 12 C 1.54327 * 104.69111 * 219.73060 * 11 10 8 13 13 H 1.09002 * 111.84855 * 214.55422 * 12 11 10 14 14 C 1.54156 * 108.86939 * 89.54423 * 12 11 10 15 15 C 1.54850 * 104.32966 * 271.20541 * 14 12 11 16 16 C 1.57138 * 102.90948 * 321.70509 * 15 14 12 17 17 C 1.54162 * 103.23597 * 38.20159 * 16 15 14 18 18 C 1.52998 * 111.82068 * 213.14692 * 17 16 15 19 19 N 1.46502 * 109.47027 * 298.60924 * 18 17 16 20 20 C 1.36938 * 119.99812 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00152 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99692 * 180.27828 * 20 19 18 23 23 N 1.31620 * 120.00238 * 359.72743 * 22 20 19 24 24 Si 1.86804 * 119.99901 * 179.72630 * 22 20 19 25 25 H 1.48499 * 109.47063 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46947 * 120.00089 * 24 22 20 27 27 H 1.48498 * 109.46959 * 239.99950 * 24 22 20 28 28 C 1.48119 * 127.84443 * 175.35169 * 10 8 5 29 29 H 1.08994 * 109.47047 * 300.00428 * 1 2 3 30 30 H 1.09000 * 109.46938 * 60.00229 * 1 2 3 31 31 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47338 * 59.99920 * 3 2 1 33 33 H 1.09004 * 109.47060 * 299.99577 * 3 2 1 34 34 H 1.08998 * 109.47295 * 59.99787 * 4 3 2 35 35 H 1.09002 * 109.46915 * 299.99056 * 4 3 2 36 36 H 1.08993 * 109.47267 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46992 * 300.00306 * 6 5 4 38 38 H 1.09004 * 109.47176 * 59.99835 * 6 5 4 39 39 H 1.09001 * 109.46938 * 307.42635 * 7 5 4 40 40 H 1.09007 * 109.46890 * 67.41954 * 7 5 4 41 41 H 1.08997 * 109.46950 * 187.42027 * 7 5 4 42 42 H 1.09003 * 110.39377 * 338.53358 * 11 10 8 43 43 H 1.09004 * 110.39537 * 100.80925 * 11 10 8 44 44 H 1.08997 * 110.46003 * 29.91468 * 14 12 11 45 45 H 1.08996 * 110.46152 * 152.49427 * 14 12 11 46 46 H 1.09001 * 110.75645 * 80.14194 * 15 14 12 47 47 H 1.09001 * 110.75297 * 203.51233 * 15 14 12 48 48 H 1.08999 * 111.52281 * 279.59375 * 16 15 14 49 49 H 1.09004 * 110.44243 * 156.29599 * 16 15 14 50 50 H 1.09002 * 109.46846 * 178.61436 * 18 17 16 51 51 H 1.08996 * 109.47257 * 58.61396 * 18 17 16 52 52 H 0.96997 * 120.00177 * 0.02562 * 19 18 17 53 53 H 0.97004 * 119.99845 * 179.97438 * 23 22 20 54 54 H 1.08995 * 110.38830 * 21.48434 * 28 10 8 55 55 H 1.08997 * 110.38611 * 259.10152 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 3.7069 3.3420 1.2479 7 6 3.7058 3.3413 -1.2506 8 6 5.6601 2.4633 -0.0013 9 8 6.1825 1.3796 -0.1546 10 7 6.4231 3.5612 0.1691 11 6 5.9775 4.9698 0.2758 12 6 7.0254 5.7733 -0.5229 13 1 7.2077 6.7532 -0.0818 14 6 6.5709 5.8620 -1.9933 15 6 7.1720 4.5988 -2.6572 16 6 8.5798 4.4770 -1.9697 17 6 8.2971 4.8883 -0.5111 18 6 9.4902 5.6111 0.1174 19 7 10.6487 4.7146 0.1376 20 6 11.8396 5.1466 0.6576 21 1 11.9247 6.1479 1.0531 22 6 12.9389 4.2992 0.6715 23 7 12.8352 3.0787 0.1898 24 14 14.5656 4.8910 1.3738 25 1 14.4200 6.2907 1.8481 26 1 14.9591 4.0217 2.5115 27 1 15.6106 4.8309 0.3204 28 6 7.8973 3.6330 0.2927 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6436 0.8892 36 1 4.1498 4.3379 1.2472 37 1 2.6202 3.4281 1.2483 38 1 4.0288 2.8014 2.1379 39 1 3.9094 2.7382 -2.1355 40 1 2.6365 3.5427 -1.1863 41 1 4.2496 4.2834 -1.3199 42 1 4.9887 5.0899 -0.1668 43 1 5.9672 5.2870 1.3186 44 1 5.4830 5.8450 -2.0574 45 1 6.9671 6.7633 -2.4609 46 1 6.5604 3.7221 -2.4440 47 1 7.2818 4.7425 -3.7321 48 1 9.3056 5.1527 -2.4223 49 1 8.9370 3.4481 -2.0131 50 1 9.2407 5.9054 1.1369 51 1 9.7275 6.4985 -0.4692 52 1 10.5725 3.8154 -0.2179 53 1 13.6036 2.4867 0.1992 54 1 8.3582 2.7439 -0.1374 55 1 8.1858 3.7436 1.3380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112555308.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:14 Heat of formation + Delta-G solvation = -95.239712 kcal Electronic energy + Delta-G solvation = -31807.276952 eV Core-core repulsion = 27843.329362 eV Total energy + Delta-G solvation = -3963.947589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13431 -40.27697 -38.86174 -36.94039 -36.44418 -35.28202 -33.50545 -31.38407 -30.90820 -30.11094 -28.34175 -27.36618 -27.14967 -26.44060 -25.84934 -24.83579 -23.66513 -21.89151 -21.20382 -20.04155 -19.74795 -18.95515 -17.75045 -17.47771 -17.42990 -17.00642 -16.51219 -16.32343 -15.91824 -15.68867 -15.67336 -15.17124 -15.06960 -14.88107 -14.73861 -14.59800 -14.28035 -14.07625 -14.04400 -13.52795 -13.45798 -13.34022 -13.10006 -12.92744 -12.79140 -12.69456 -12.60429 -12.33168 -12.20197 -12.12653 -11.93486 -11.86653 -11.81652 -11.80088 -11.73590 -11.61489 -11.51640 -11.42794 -11.24401 -10.93999 -10.65569 -10.53686 -9.65575 -8.98679 -7.94540 -5.23354 1.45527 1.46792 1.56830 1.60317 1.88662 2.55281 2.85119 3.26489 3.39005 3.41847 3.58638 3.60570 3.80043 3.84628 4.16683 4.17853 4.19571 4.21299 4.23279 4.26585 4.29518 4.42201 4.43772 4.48530 4.55217 4.57586 4.58053 4.65120 4.69992 4.71841 4.75380 4.79456 4.87111 4.88368 4.92823 4.95007 4.96573 5.02469 5.03374 5.05819 5.11595 5.16734 5.22360 5.32549 5.34195 5.36894 5.39267 5.47797 5.50100 5.51940 6.26880 6.28259 6.61906 7.13994 7.33004 8.10696 8.32101 9.29432 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.002626 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.940591 B =10659.464169 C =11343.632183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.065 3.935 4 C -0.093 4.093 5 C -0.062 4.062 6 C -0.153 4.153 7 C -0.149 4.149 8 C 0.532 3.468 9 O -0.598 6.598 10 N -0.608 5.608 11 C 0.094 3.906 12 C -0.091 4.091 13 H 0.118 0.882 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.068 4.068 18 C 0.171 3.829 19 N -0.744 5.744 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.082 4.082 23 N -0.974 5.974 24 Si 0.974 3.026 25 H -0.261 1.261 26 H -0.297 1.297 27 H -0.296 1.296 28 C 0.126 3.874 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.026 0.974 50 H 0.028 0.972 51 H 0.031 0.969 52 H 0.371 0.629 53 H 0.249 0.751 54 H 0.037 0.963 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.576 7.843 -2.218 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.011 4.011 4 C -0.132 4.132 5 C -0.065 4.065 6 C -0.210 4.210 7 C -0.205 4.205 8 C 0.322 3.678 9 O -0.479 6.479 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.110 4.110 13 H 0.136 0.864 14 C -0.141 4.141 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.069 4.069 18 C 0.045 3.955 19 N -0.387 5.387 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.225 1.225 27 H -0.223 1.223 28 C 0.002 3.998 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.141 0.859 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.045 0.955 50 H 0.045 0.955 51 H 0.049 0.951 52 H 0.202 0.798 53 H 0.057 0.943 54 H 0.055 0.945 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.175 7.170 -2.214 31.094 hybrid contribution 1.953 -1.038 0.296 2.231 sum -28.222 6.132 -1.918 28.944 Atomic orbital electron populations 1.22925 0.79229 1.03667 1.01205 1.87856 1.21760 1.29375 1.95685 1.22701 0.91742 0.84420 1.02188 1.21240 0.94609 0.95120 1.02201 1.20611 0.87965 0.97314 1.00626 1.22232 1.03904 1.00834 0.94048 1.22158 1.04015 1.00258 0.94111 1.20990 0.90230 0.81908 0.74626 1.90705 1.76082 1.28977 1.52140 1.48931 1.06663 1.07804 1.70629 1.23152 0.99544 0.78271 1.01705 1.22790 0.91686 0.98982 0.97533 0.86358 1.22393 1.01445 0.97269 0.92989 1.22805 0.94352 0.98690 0.99474 1.22667 0.97968 0.99072 0.94679 1.22129 0.95488 0.94358 0.94953 1.20797 0.85269 0.92317 0.97132 1.42604 1.08017 1.14472 1.73570 1.19703 0.88855 0.97870 1.30467 0.90135 1.25608 1.01893 0.96460 1.03382 1.69860 1.30704 1.07999 1.53933 0.85059 0.79719 0.77899 0.77013 1.18507 1.22451 1.22300 1.22129 0.80853 0.97606 0.99189 0.92732 0.92714 0.89185 0.90899 0.90889 0.92961 0.93229 0.89401 0.88310 0.93413 0.93020 0.87914 0.89964 0.85950 0.89237 0.88520 0.90100 0.93061 0.91108 0.92153 0.95513 0.95459 0.95122 0.79767 0.94262 0.94458 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.43 -8.61 10.70 -148.98 -1.59 -10.20 16 3 C 0.07 1.01 5.24 71.98 0.38 1.38 16 4 C -0.09 -2.11 3.97 30.60 0.12 -1.98 16 5 C -0.06 -1.17 0.52 -52.93 -0.03 -1.20 16 6 C -0.15 -1.95 7.82 71.98 0.56 -1.39 16 7 C -0.15 -1.86 7.69 71.98 0.55 -1.31 16 8 C 0.53 15.97 6.59 87.66 0.58 16.55 16 9 O -0.60 -25.14 16.23 -3.03 -0.05 -25.18 16 10 N -0.61 -16.49 2.49 -808.34 -2.01 -18.50 16 11 C 0.09 1.57 4.22 86.52 0.37 1.94 16 12 C -0.09 -1.74 3.62 -9.29 -0.03 -1.78 16 13 H 0.12 1.85 7.88 -2.39 -0.02 1.83 16 14 C -0.10 -1.68 6.28 31.62 0.20 -1.48 16 15 C -0.12 -2.78 6.57 32.68 0.21 -2.57 16 16 C -0.11 -3.54 5.50 32.44 0.18 -3.36 16 17 C -0.07 -2.11 0.67 -50.68 -0.03 -2.14 16 18 C 0.17 6.55 5.10 86.38 0.44 6.99 16 19 N -0.74 -38.21 5.23 -343.46 -1.80 -40.00 16 20 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 22 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 23 N -0.97 -62.29 13.06 21.65 0.28 -62.00 16 24 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 C 0.13 4.48 5.53 86.52 0.48 4.96 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 33 H 0.07 0.81 6.60 -2.38 -0.02 0.79 16 34 H 0.05 1.44 8.01 -2.39 -0.02 1.42 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 0.85 4.64 -2.39 -0.01 0.84 16 37 H 0.10 0.68 6.43 -2.39 -0.02 0.66 16 38 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.62 6.84 -2.38 -0.02 0.61 16 41 H 0.08 0.83 4.32 -2.39 -0.01 0.82 16 42 H 0.12 1.20 3.50 -2.39 -0.01 1.19 16 43 H 0.09 1.27 7.87 -2.39 -0.02 1.25 16 44 H 0.10 0.98 6.54 -2.39 -0.02 0.96 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.13 7.96 -2.39 -0.02 2.11 16 49 H 0.03 1.07 7.42 -2.38 -0.02 1.06 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.37 21.00 7.06 -92.71 -0.65 20.35 16 53 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 54 H 0.04 1.66 7.12 -2.39 -0.02 1.65 16 55 H 0.06 2.19 7.95 -2.39 -0.02 2.18 16 Total: -1.00 -81.07 406.18 3.61 -77.46 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.22 Total: 29.83 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.53 Total: -0.70 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -3.52 Total: -120.51 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.64 Total: -35.39 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -81.07 3.61 -77.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112555308.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.777 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds