Wall clock time and date at job start Tue Mar 31 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99793 * 2 1 4 4 C 1.53003 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46070 * 299.99981 * 4 3 2 6 6 N 1.46501 * 109.47202 * 59.99899 * 5 4 3 7 7 C 1.34776 * 120.00036 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00055 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00077 * 179.72015 * 7 6 5 10 10 H 1.08993 * 115.55275 * 325.95425 * 9 7 6 11 11 C 1.53009 * 117.49384 * 111.65899 * 9 7 6 12 12 C 1.53005 * 117.49829 * 180.27859 * 9 7 6 13 13 H 1.08991 * 117.49891 * 0.02672 * 12 9 7 14 14 C 1.53000 * 117.49506 * 145.02734 * 12 9 7 15 15 C 1.53002 * 109.46607 * 179.97438 * 14 12 9 16 16 C 1.52996 * 109.47021 * 299.99622 * 14 12 9 17 17 C 1.53039 * 109.45778 * 59.96993 * 4 3 2 18 18 C 1.53166 * 109.32822 * 181.38631 * 17 4 3 19 19 N 1.46925 * 108.76550 * 305.35796 * 18 17 4 20 20 C 1.36946 * 120.62992 * 233.58519 * 19 18 17 21 21 H 1.07997 * 119.99646 * 152.30757 * 20 19 18 22 22 C 1.38808 * 119.99882 * 332.30721 * 20 19 18 23 23 N 1.31618 * 120.00462 * 342.60375 * 22 20 19 24 24 Si 1.86803 * 119.99679 * 162.59611 * 22 20 19 25 25 H 1.48504 * 109.46802 * 94.35096 * 24 22 20 26 26 H 1.48501 * 109.47094 * 214.34652 * 24 22 20 27 27 H 1.48494 * 109.47205 * 334.35248 * 24 22 20 28 28 C 1.46923 * 118.74121 * 53.60927 * 19 18 17 29 29 C 1.53036 * 109.46020 * 180.02562 * 4 3 2 30 30 H 1.08990 * 109.47389 * 300.00486 * 1 2 3 31 31 H 1.09006 * 109.46424 * 60.00315 * 1 2 3 32 32 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47329 * 59.99548 * 3 2 1 34 34 H 1.08992 * 109.47266 * 299.99078 * 3 2 1 35 35 H 1.09004 * 109.47517 * 299.99879 * 5 4 3 36 36 H 1.09005 * 109.47313 * 179.97438 * 5 4 3 37 37 H 0.96996 * 120.00335 * 359.97438 * 6 5 4 38 38 H 1.09002 * 117.49527 * 214.98183 * 11 9 7 39 39 H 1.08993 * 117.50095 * 359.97438 * 11 9 7 40 40 H 1.08997 * 109.47355 * 59.99698 * 14 12 9 41 41 H 1.08998 * 109.47258 * 60.00367 * 15 14 12 42 42 H 1.09003 * 109.46524 * 179.97438 * 15 14 12 43 43 H 1.09000 * 109.47085 * 299.99539 * 15 14 12 44 44 H 1.09001 * 109.47395 * 60.00447 * 16 14 12 45 45 H 1.09003 * 109.47253 * 180.02562 * 16 14 12 46 46 H 1.08997 * 109.47119 * 300.00221 * 16 14 12 47 47 H 1.09000 * 109.50457 * 301.32491 * 17 4 3 48 48 H 1.08999 * 109.49619 * 61.42088 * 17 4 3 49 49 H 1.09003 * 109.59145 * 185.57624 * 18 17 4 50 50 H 1.08996 * 109.59140 * 65.13950 * 18 17 4 51 51 H 0.96999 * 120.00131 * 179.97438 * 23 22 20 52 52 H 1.09006 * 109.58893 * 186.60352 * 28 19 18 53 53 H 1.08995 * 109.58859 * 66.17738 * 28 19 18 54 54 H 1.08999 * 109.49774 * 298.57766 * 29 4 3 55 55 H 1.09005 * 109.49637 * 58.64734 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9862 0.4256 1.2503 6 7 3.3902 -0.9127 1.2502 7 6 3.6490 -1.7657 2.2611 8 8 4.3749 -1.4252 3.1711 9 6 3.0308 -3.1401 2.2643 10 1 2.0304 -3.2066 1.8369 11 6 3.9653 -4.3353 2.0658 12 6 3.3582 -4.0592 3.4428 13 1 4.0203 -3.6697 4.2161 14 6 2.2562 -5.0018 3.9309 15 6 2.7779 -5.8307 5.1063 16 6 1.0462 -4.1813 4.3820 17 6 3.9872 0.4243 -1.2483 18 6 5.5114 0.2749 -1.2273 19 7 6.1149 1.6064 -1.0805 20 6 7.0612 2.0452 -1.9678 21 1 7.1780 3.1026 -2.1537 22 6 7.8703 1.1308 -2.6282 23 7 7.9799 -0.0996 -2.1737 24 14 8.8034 1.6465 -4.1621 25 1 10.1752 2.0739 -3.7867 26 1 8.8821 0.4999 -5.1025 27 1 8.0948 2.7756 -4.8164 28 6 5.6841 2.4581 0.0365 29 6 4.1577 2.5829 0.0013 30 1 -0.3633 0.5138 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6888 1.8463 -0.8900 35 1 3.6641 0.9667 2.1400 36 1 5.0728 0.3390 1.2507 37 1 2.8093 -1.1849 0.5227 38 1 3.5796 -5.1884 1.5076 39 1 5.0269 -4.1275 1.9325 40 1 1.9618 -5.6674 3.1196 41 1 3.0726 -5.1653 5.9178 42 1 1.9927 -6.5019 5.4543 43 1 3.6398 -6.4153 4.7845 44 1 0.6747 -3.5910 3.5444 45 1 0.2613 -4.8527 4.7302 46 1 1.3407 -3.5156 5.1933 47 1 3.5254 -0.5630 -1.2602 48 1 3.6880 0.9771 -2.1388 49 1 5.8472 -0.1776 -2.1604 50 1 5.8054 -0.3541 -0.3871 51 1 8.5450 -0.7386 -2.6355 52 1 6.1339 3.4461 -0.0626 53 1 5.9922 2.0071 0.9797 54 1 3.8569 3.1153 -0.9010 55 1 3.8167 3.1324 0.8788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162557785.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:20 Heat of formation + Delta-G solvation = -68.680787 kcal Electronic energy + Delta-G solvation = -31706.458043 eV Core-core repulsion = 27743.662135 eV Total energy + Delta-G solvation = -3962.795908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42836 -40.33157 -38.34908 -38.27517 -36.05462 -34.56922 -34.14554 -32.68141 -31.61819 -28.98075 -28.13978 -27.87715 -26.96963 -25.48552 -24.63960 -23.87132 -23.71963 -22.51035 -21.17362 -20.63648 -19.82993 -18.75502 -17.91089 -17.11733 -17.04098 -16.94316 -16.78706 -16.30018 -15.92548 -15.70804 -15.57033 -15.31110 -15.23804 -14.90379 -14.80146 -14.38047 -14.10113 -13.96603 -13.78271 -13.53571 -13.40870 -13.30494 -13.05781 -12.98985 -12.94751 -12.65932 -12.53608 -12.29961 -12.28101 -12.16285 -12.03174 -11.99152 -11.84080 -11.54501 -11.46889 -11.23657 -11.16250 -11.11278 -11.00148 -10.72887 -10.54913 -10.47262 -9.88312 -8.65898 -7.86214 -5.31432 1.45641 1.46671 1.57126 1.58536 2.23287 2.51444 2.83267 2.92529 3.28277 3.65746 3.67188 3.73953 3.81127 3.87107 3.95739 3.99457 4.13053 4.24212 4.28444 4.41268 4.46845 4.47786 4.50832 4.55205 4.62655 4.67033 4.68835 4.70529 4.72628 4.82450 4.86404 4.88112 4.91207 4.94605 4.99398 5.03343 5.05940 5.08509 5.16652 5.23855 5.24131 5.27301 5.30015 5.36567 5.46954 5.48670 5.55670 5.64016 5.67667 5.79053 6.27155 6.39440 6.78954 7.15580 7.41777 7.87581 8.39339 9.19812 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003190 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.827203 B = 8775.239538 C =10089.260151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.082 3.918 4 C -0.051 4.051 5 C 0.141 3.859 6 N -0.694 5.694 7 C 0.526 3.474 8 O -0.602 6.602 9 C -0.184 4.184 10 H 0.149 0.851 11 C -0.146 4.146 12 C -0.110 4.110 13 H 0.087 0.913 14 C -0.060 4.060 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.108 4.108 18 C 0.184 3.816 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.069 0.931 22 C -0.054 4.054 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.267 1.267 28 C 0.137 3.863 29 C -0.108 4.108 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.417 0.583 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.048 0.952 50 H -0.013 1.013 51 H 0.248 0.752 52 H 0.057 0.943 53 H 0.006 0.994 54 H 0.074 0.926 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.247 -6.422 7.843 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.005 3.995 4 C -0.052 4.052 5 C 0.016 3.984 6 N -0.350 5.350 7 C 0.314 3.686 8 O -0.484 6.484 9 C -0.205 4.205 10 H 0.166 0.834 11 C -0.184 4.184 12 C -0.129 4.129 13 H 0.105 0.895 14 C -0.079 4.079 15 C -0.202 4.202 16 C -0.202 4.202 17 C -0.147 4.147 18 C 0.058 3.942 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.582 5.582 24 Si 0.795 3.205 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.191 1.191 28 C 0.012 3.988 29 C -0.147 4.147 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.005 0.995 51 H 0.057 0.943 52 H 0.076 0.924 53 H 0.024 0.976 54 H 0.093 0.907 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.564 -6.425 8.372 23.114 hybrid contribution 1.038 0.435 -1.006 1.509 sum -19.527 -5.991 7.366 21.713 Atomic orbital electron populations 1.22899 0.79302 1.03850 1.00619 1.87510 1.21414 1.28297 1.95509 1.22550 0.90895 0.84709 1.01309 1.20694 0.94291 0.96189 0.94026 1.21210 0.96772 0.83135 0.97260 1.46121 1.49676 1.14008 1.25170 1.20362 0.80085 0.86865 0.81268 1.90639 1.40497 1.78837 1.38429 1.22255 1.02204 0.87981 1.08070 0.83376 1.23152 0.97791 0.97564 0.99848 1.22452 1.00760 0.98801 0.90885 0.89490 1.20754 0.92978 0.95255 0.98870 1.21807 1.01509 0.99592 0.97254 1.21814 0.97210 0.99973 1.01191 1.21916 0.96611 0.99628 0.96586 1.20503 0.89827 0.85762 0.98119 1.44326 1.44697 1.15377 1.28780 1.19544 1.10429 0.92530 1.16587 0.91339 1.25818 0.99023 0.96743 1.03304 1.70225 1.41915 1.05687 1.40410 0.85272 0.78335 0.77205 0.79689 1.21561 1.21946 1.19135 1.21082 0.93948 0.94438 0.89335 1.21848 0.95586 0.94360 1.02954 0.93557 0.93251 0.88301 0.91937 0.91709 0.92408 0.94575 0.73953 0.84883 0.90729 0.89286 0.93502 0.90981 0.92555 0.92466 0.91027 0.93914 0.91629 0.92366 0.93333 0.99518 0.94315 0.92407 0.97629 0.90710 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.76 6.73 -148.98 -1.00 -9.77 16 3 C 0.08 1.85 4.80 71.98 0.35 2.20 16 4 C -0.05 -1.58 0.51 -52.16 -0.03 -1.60 16 5 C 0.14 4.94 3.80 86.38 0.33 5.27 16 6 N -0.69 -22.25 4.63 -463.04 -2.14 -24.39 16 7 C 0.53 18.03 7.61 87.66 0.67 18.70 16 8 O -0.60 -26.05 16.26 -3.05 -0.05 -26.10 16 9 C -0.18 -4.53 5.39 -11.53 -0.06 -4.59 16 10 H 0.15 2.73 7.61 -2.39 -0.02 2.71 16 11 C -0.15 -3.37 9.88 30.60 0.30 -3.06 16 12 C -0.11 -2.52 4.66 -10.79 -0.05 -2.57 16 13 H 0.09 2.52 7.64 -2.39 -0.02 2.50 16 14 C -0.06 -0.96 3.07 -10.79 -0.03 -0.99 16 15 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 16 C -0.14 -2.16 9.03 71.98 0.65 -1.51 16 17 C -0.11 -3.98 4.59 30.66 0.14 -3.84 16 18 C 0.18 9.05 4.84 86.35 0.42 9.47 16 19 N -0.61 -30.98 2.99 -699.15 -2.09 -33.08 16 20 C -0.26 -14.54 9.58 84.03 0.81 -13.73 16 21 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 22 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 23 N -0.94 -57.20 11.19 21.65 0.24 -56.95 16 24 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.14 5.75 6.05 86.36 0.52 6.27 16 29 C -0.11 -3.37 4.91 30.67 0.15 -3.22 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.62 4.98 -2.38 -0.01 1.61 16 37 H 0.42 11.79 4.71 -92.71 -0.44 11.35 16 38 H 0.13 2.20 8.05 -2.39 -0.02 2.19 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 0.83 7.29 -2.39 -0.02 0.82 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 2.25 6.50 -2.39 -0.02 2.23 16 48 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.05 2.74 6.04 -2.39 -0.01 2.72 16 50 H -0.01 -0.73 6.69 -2.39 -0.02 -0.75 16 51 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 52 H 0.06 2.34 7.93 -2.38 -0.02 2.33 16 53 H 0.01 0.26 6.69 -2.39 -0.02 0.24 16 54 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 55 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -73.47 416.89 3.88 -69.59 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.41 Total: 28.72 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.48 Total: 4.31 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.99 Total: -114.42 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.05 Total: -35.87 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.47 3.88 -69.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162557785.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.906 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds