Wall clock time and date at job start Tue Mar 31 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46596 * 2 1 4 4 C 1.52993 * 109.47118 * 119.99900 * 2 1 3 5 5 C 1.52999 * 109.47320 * 175.00124 * 4 2 1 6 6 N 1.46896 * 109.47459 * 179.97438 * 5 4 2 7 7 C 1.48464 * 111.00173 * 293.95566 * 6 5 4 8 8 C 1.54176 * 111.97715 * 192.46333 * 7 6 5 9 9 O 1.39986 * 113.27190 * 318.70490 * 8 7 6 10 10 C 1.44603 * 112.93974 * 94.38859 * 9 8 7 11 11 C 1.46303 * 111.22802 * 280.78264 * 10 9 8 12 12 C 1.54591 * 112.56648 * 182.42626 * 11 10 9 13 13 C 1.51286 * 104.28051 * 145.17538 * 12 11 10 14 14 O 1.21285 * 124.94072 * 164.13031 * 13 12 11 15 15 N 1.34422 * 110.12371 * 344.24772 * 13 12 11 16 16 C 1.46496 * 124.34909 * 179.43734 * 15 13 12 17 17 C 1.53006 * 109.46995 * 269.69650 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.46757 * 111.30216 * 359.16768 * 15 13 12 27 27 C 1.44089 * 110.99913 * 165.83730 * 6 5 4 28 28 H 1.09001 * 109.47483 * 299.99798 * 1 2 3 29 29 H 1.08995 * 109.47519 * 59.99983 * 1 2 3 30 30 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47040 * 240.00060 * 2 1 3 32 32 H 1.08994 * 109.47455 * 299.99725 * 3 2 1 33 33 H 1.08997 * 109.47377 * 60.00267 * 3 2 1 34 34 H 1.09004 * 109.46841 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47226 * 55.00421 * 4 2 1 36 36 H 1.08996 * 109.47464 * 295.00065 * 4 2 1 37 37 H 1.09004 * 109.46728 * 59.99992 * 5 4 2 38 38 H 1.09000 * 109.47259 * 300.00511 * 5 4 2 39 39 H 1.08997 * 108.98507 * 71.82206 * 7 6 5 40 40 H 1.09002 * 108.91517 * 313.05844 * 7 6 5 41 41 H 1.09003 * 108.72582 * 197.72018 * 8 7 6 42 42 H 1.09001 * 108.72342 * 79.68236 * 8 7 6 43 43 H 1.09004 * 109.12809 * 160.33249 * 10 9 8 44 44 H 1.09000 * 109.12812 * 41.23394 * 10 9 8 45 45 H 1.08998 * 110.48365 * 264.06402 * 12 11 10 46 46 H 1.08998 * 110.48297 * 26.69283 * 12 11 10 47 47 H 1.09001 * 109.47001 * 149.69948 * 16 15 13 48 48 H 1.09001 * 109.47464 * 29.69389 * 16 15 13 49 49 H 1.08998 * 109.46509 * 60.00302 * 17 16 15 50 50 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 51 51 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 52 52 H 1.09001 * 110.24117 * 136.18455 * 26 15 13 53 53 H 1.09002 * 110.24312 * 258.08245 * 26 15 13 54 54 H 1.09000 * 109.72585 * 99.88641 * 27 6 5 55 55 H 1.09001 * 109.72560 * 339.21433 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0545 -1.5229 2.3877 7 6 3.8074 -0.7130 3.6072 8 6 4.5743 -1.2595 4.8280 9 8 4.5549 -2.6566 4.9131 10 6 5.7140 -3.2743 4.3080 11 6 5.5836 -3.3327 2.8520 12 6 6.7800 -4.0419 2.1772 13 6 6.1674 -4.7694 1.0006 14 8 6.7897 -5.2206 0.0624 15 7 4.8329 -4.8406 1.1449 16 6 3.9294 -5.4699 0.1785 17 6 3.4673 -4.4273 -0.8415 18 6 2.5385 -5.0748 -1.8360 19 1 2.3011 -6.1249 -1.7490 20 6 1.9908 -4.3265 -2.8564 21 7 2.2794 -3.0479 -2.9621 22 14 0.8389 -5.1290 -4.0887 23 1 0.3905 -4.1171 -5.0788 24 1 -0.3409 -5.6818 -3.3762 25 1 1.5518 -6.2261 -4.7911 26 6 4.3978 -4.2126 2.3979 27 6 5.4247 -1.9369 2.2218 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 3.9994 0.1676 1.1421 38 1 3.8532 -1.3939 0.3002 39 1 2.7399 -0.7198 3.8271 40 1 4.1240 0.3131 3.4200 41 1 4.1294 -0.8475 5.7338 42 1 5.6106 -0.9270 4.7678 43 1 5.8237 -4.2864 4.6977 44 1 6.6016 -2.6958 4.5642 45 1 7.5141 -3.3115 1.8371 46 1 7.2385 -4.7533 2.8641 47 1 3.0633 -5.8754 0.7015 48 1 4.4526 -6.2754 -0.3369 49 1 4.3335 -4.0220 -1.3645 50 1 2.9442 -3.6219 -0.3262 51 1 2.8773 -2.6311 -2.3220 52 1 3.5156 -3.5963 2.2244 53 1 4.1833 -4.9747 3.1471 54 1 6.0859 -1.2298 2.7226 55 1 5.6694 -1.9823 1.1606 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272448069.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:52 Heat of formation + Delta-G solvation = -106.668225 kcal Electronic energy + Delta-G solvation = -32860.656115 eV Core-core repulsion = 28896.212948 eV Total energy + Delta-G solvation = -3964.443167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22464 -40.15059 -38.39070 -37.53088 -36.53579 -36.11462 -34.59319 -31.63829 -30.96245 -29.72264 -28.49261 -28.07291 -27.23842 -26.63231 -25.58457 -23.92680 -23.55147 -21.80408 -20.92533 -20.67332 -20.34115 -19.01720 -17.77174 -17.45880 -17.43996 -17.11494 -16.60243 -16.35284 -16.04834 -15.69368 -15.63880 -15.31039 -15.13852 -15.06630 -14.75035 -14.57714 -14.42150 -14.20189 -14.15772 -13.80546 -13.70721 -13.48988 -13.41491 -13.10033 -12.84538 -12.73075 -12.68741 -12.39934 -12.33777 -12.16748 -12.09114 -12.08249 -11.93410 -11.77858 -11.60102 -11.55017 -11.37907 -11.31705 -11.02397 -10.75215 -10.55788 -10.47196 -9.60469 -9.10983 -8.70085 -6.40665 1.48893 1.55325 1.58243 1.77102 2.14091 2.54946 2.61710 3.00987 3.15027 3.35181 3.54723 3.62495 3.73347 3.89409 3.93387 4.05355 4.07844 4.17147 4.18245 4.22455 4.30283 4.37913 4.39933 4.51753 4.53745 4.59829 4.62213 4.63737 4.69586 4.71719 4.75041 4.75964 4.77876 4.82170 4.85042 4.90963 4.94936 5.00786 5.05798 5.09861 5.11222 5.17133 5.17470 5.27634 5.32926 5.45734 5.50482 5.58763 5.96096 6.04089 6.14563 6.23083 6.30368 6.41772 6.52542 7.16682 7.41372 8.69634 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.005167 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.316963 B = 5417.335014 C = 7871.555773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.091 4.091 5 C 0.075 3.925 6 N -0.552 5.552 7 C 0.031 3.969 8 C 0.059 3.941 9 O -0.372 6.372 10 C 0.081 3.919 11 C -0.081 4.081 12 C -0.127 4.127 13 C 0.493 3.507 14 O -0.598 6.598 15 N -0.611 5.611 16 C 0.148 3.852 17 C 0.024 3.976 18 C -0.622 4.622 19 H 0.051 0.949 20 C -0.031 4.031 21 N -0.924 5.924 22 Si 1.116 2.884 23 H -0.282 1.282 24 H -0.265 1.265 25 H -0.274 1.274 26 C 0.118 3.882 27 C 0.075 3.925 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.049 0.951 49 H -0.037 1.037 50 H -0.002 1.002 51 H 0.253 0.747 52 H 0.089 0.911 53 H 0.077 0.923 54 H 0.072 0.928 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 9.042 21.009 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C -0.192 4.192 4 C -0.129 4.129 5 C -0.053 4.053 6 N -0.277 5.277 7 C -0.096 4.096 8 C -0.019 4.019 9 O -0.289 6.289 10 C 0.005 3.995 11 C -0.083 4.083 12 C -0.167 4.167 13 C 0.283 3.717 14 O -0.481 6.481 15 N -0.342 5.342 16 C 0.026 3.974 17 C -0.014 4.014 18 C -0.661 4.661 19 H 0.070 0.930 20 C -0.230 4.230 21 N -0.561 5.561 22 Si 0.937 3.063 23 H -0.207 1.207 24 H -0.190 1.190 25 H -0.199 1.199 26 C -0.004 4.004 27 C -0.054 4.054 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.155 0.845 47 H 0.098 0.902 48 H 0.068 0.932 49 H -0.019 1.019 50 H 0.017 0.983 51 H 0.062 0.938 52 H 0.107 0.893 53 H 0.095 0.905 54 H 0.090 0.910 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.046 8.576 19.331 21.366 hybrid contribution 1.488 0.327 0.008 1.524 sum 4.534 8.902 19.340 21.768 Atomic orbital electron populations 1.21719 0.94594 1.00897 1.02182 1.21055 0.96511 0.97088 0.97386 1.21784 1.00582 0.94567 1.02316 1.21429 0.94078 0.99607 0.97743 1.22019 0.96062 0.96131 0.91062 1.60317 1.19716 1.44687 1.02947 1.23325 1.02256 0.94799 0.89235 1.22488 1.00308 0.82032 0.97047 1.87848 1.44796 1.19432 1.76845 1.21618 0.88720 1.01041 0.88092 1.21090 0.93595 0.95223 0.98411 1.22390 0.98083 1.01011 0.95231 1.21799 0.82854 0.79263 0.87821 1.90665 1.67040 1.52709 1.37636 1.48646 1.07011 1.56414 1.22167 1.21155 0.91973 0.94910 0.89411 1.19208 0.93571 0.94891 0.93705 1.22312 1.31029 0.97853 1.14870 0.93047 1.27360 0.99734 0.95406 1.00466 1.70899 1.35249 1.12062 1.37873 0.82968 0.74691 0.74705 0.73973 1.20701 1.18955 1.19933 1.22320 0.99315 0.95410 0.83344 1.21765 0.89262 0.95182 0.99202 0.90630 0.92893 0.94695 0.95121 0.92970 0.90745 0.93101 0.94266 0.89837 0.93581 0.95307 0.90483 0.92755 0.87571 0.91814 0.87066 0.89235 0.86847 0.84465 0.90165 0.93239 1.01918 0.98339 0.93786 0.89323 0.90483 0.91026 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.19 71.98 0.66 -3.31 16 2 C -0.10 -3.18 2.92 -10.80 -0.03 -3.21 16 3 C -0.14 -3.32 8.95 71.98 0.64 -2.68 16 4 C -0.09 -2.67 4.62 30.59 0.14 -2.52 16 5 C 0.07 2.21 4.63 86.30 0.40 2.61 16 6 N -0.55 -13.61 2.31 -894.86 -2.07 -15.68 16 7 C 0.03 0.53 5.32 86.40 0.46 0.99 16 8 C 0.06 0.78 6.05 72.38 0.44 1.22 16 9 O -0.37 -6.49 10.34 -140.60 -1.45 -7.94 16 10 C 0.08 1.15 4.90 69.92 0.34 1.49 16 11 C -0.08 -1.73 0.63 -52.87 -0.03 -1.76 16 12 C -0.13 -2.93 5.75 30.58 0.18 -2.75 16 13 C 0.49 18.91 7.88 87.90 0.69 19.60 16 14 O -0.60 -29.30 17.58 -3.04 -0.05 -29.35 16 15 N -0.61 -23.55 2.93 -817.97 -2.40 -25.94 16 16 C 0.15 6.89 5.88 86.38 0.51 7.39 16 17 C 0.02 1.36 4.61 29.85 0.14 1.50 16 18 C -0.62 -37.40 9.11 25.60 0.23 -37.16 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C -0.03 -1.87 5.46 84.65 0.46 -1.40 16 21 N -0.92 -58.81 13.65 21.45 0.29 -58.52 16 22 Si 1.12 52.20 29.90 68.60 2.05 54.25 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.12 3.47 6.08 86.84 0.53 3.99 16 27 C 0.07 1.75 4.25 87.15 0.37 2.12 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.24 6.57 -2.38 -0.02 1.22 16 35 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.08 1.96 6.82 -2.39 -0.02 1.94 16 37 H 0.05 1.21 6.41 -2.38 -0.02 1.19 16 38 H 0.03 1.14 7.65 -2.39 -0.02 1.12 16 39 H 0.08 1.41 7.08 -2.39 -0.02 1.39 16 40 H 0.05 0.81 7.92 -2.39 -0.02 0.79 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 0.62 6.58 -2.39 -0.02 0.60 16 43 H 0.11 1.28 8.12 -2.38 -0.02 1.26 16 44 H 0.09 0.78 7.48 -2.39 -0.02 0.76 16 45 H 0.11 2.35 7.86 -2.39 -0.02 2.33 16 46 H 0.14 2.23 7.95 -2.39 -0.02 2.21 16 47 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 48 H 0.05 2.47 7.92 -2.39 -0.02 2.45 16 49 H -0.04 -2.41 8.01 -2.39 -0.02 -2.43 16 50 H 0.00 -0.10 8.01 -2.39 -0.02 -0.11 16 51 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 52 H 0.09 3.05 6.37 -2.39 -0.02 3.03 16 53 H 0.08 2.00 7.94 -2.39 -0.02 1.98 16 54 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 55 H 0.04 1.23 7.01 -2.39 -0.02 1.21 16 Total: -1.00 -79.84 415.11 3.44 -76.40 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.94 Total: 20.66 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 6.13 Total: -13.88 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -4.17 Total: -100.14 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.51 Total: -37.29 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.25 kcal Total: -79.84 3.44 -76.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272448069.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -79.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds