Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47325 * 2 1 4 4 C 1.53007 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.81654 * 51.66107 * 4 3 2 6 6 C 1.54891 * 110.75192 * 288.32612 * 4 3 2 7 7 C 1.54265 * 104.19254 * 203.74509 * 6 4 3 8 8 C 1.53872 * 106.60069 * 23.60748 * 7 6 4 9 9 C 1.54263 * 106.59968 * 0.02562 * 8 7 6 10 10 H 1.08998 * 110.49002 * 95.06281 * 9 8 7 11 11 C 1.50701 * 110.48501 * 217.71111 * 9 8 7 12 12 O 1.21285 * 120.00176 * 85.25433 * 11 9 8 13 13 N 1.34782 * 119.99803 * 265.24987 * 11 9 8 14 14 C 1.46930 * 120.63031 * 5.05934 * 13 11 9 15 15 C 1.53625 * 108.53875 * 126.36926 * 14 13 11 16 16 C 1.53037 * 109.24129 * 54.85852 * 15 14 13 17 17 O 1.42901 * 109.44870 * 58.52142 * 16 15 14 18 18 C 1.53002 * 109.45887 * 178.48587 * 16 15 14 19 19 N 1.46497 * 109.47326 * 305.06783 * 18 16 15 20 20 C 1.36940 * 119.99837 * 179.97438 * 19 18 16 21 21 H 1.07993 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99598 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99954 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99527 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47219 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46668 * 120.00436 * 24 22 20 27 27 H 1.48495 * 109.47036 * 240.00072 * 24 22 20 28 28 C 1.53041 * 109.53999 * 298.50742 * 16 15 14 29 29 C 1.46929 * 120.62773 * 185.34607 * 13 11 9 30 30 H 1.08996 * 109.47119 * 59.99809 * 1 2 3 31 31 H 1.09003 * 109.47673 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46975 * 300.00584 * 1 2 3 33 33 H 1.09002 * 109.46975 * 239.99416 * 2 1 3 34 34 H 1.09001 * 109.46724 * 119.99950 * 2 1 3 35 35 H 1.08999 * 109.47211 * 60.00134 * 3 2 1 36 36 H 1.09001 * 109.47179 * 299.99672 * 3 2 1 37 37 H 1.08999 * 110.48830 * 85.06587 * 6 4 3 38 38 H 1.09004 * 110.59837 * 322.47578 * 6 4 3 39 39 H 1.09004 * 110.03149 * 264.32663 * 7 6 4 40 40 H 1.09003 * 110.03275 * 142.89480 * 7 6 4 41 41 H 1.08998 * 110.03648 * 240.71591 * 8 7 6 42 42 H 1.09007 * 110.06730 * 119.30935 * 8 7 6 43 43 H 1.08994 * 109.58545 * 246.20327 * 14 13 11 44 44 H 1.08999 * 109.58579 * 6.63247 * 14 13 11 45 45 H 1.08996 * 109.63512 * 294.86541 * 15 14 13 46 46 H 1.09000 * 109.45464 * 174.73877 * 15 14 13 47 47 H 0.96695 * 114.00004 * 59.94231 * 17 16 15 48 48 H 1.09001 * 109.47071 * 65.07114 * 18 16 15 49 49 H 1.08999 * 109.47069 * 185.06335 * 18 16 15 50 50 H 0.96998 * 119.99544 * 0.02562 * 19 18 16 51 51 H 0.96998 * 119.99437 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.49606 * 301.41534 * 28 16 15 53 53 H 1.08999 * 109.49940 * 181.31234 * 28 16 15 54 54 H 1.08996 * 109.58562 * 353.36912 * 29 13 11 55 55 H 1.09000 * 109.58783 * 113.65812 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9570 0.8105 -0.8000 6 6 4.1194 0.9867 1.3740 7 6 5.5337 1.5995 1.4382 8 6 5.5334 2.8066 0.4838 9 6 4.1188 2.8855 -0.1265 10 1 3.4979 3.5809 0.4382 11 6 4.1914 3.2972 -1.5744 12 8 4.3730 2.4613 -2.4342 13 7 4.0543 4.5944 -1.9138 14 6 3.9444 5.6314 -0.8787 15 6 5.0103 6.7046 -1.1474 16 6 4.8523 7.2254 -2.5777 17 8 3.5385 7.7616 -2.7464 18 6 5.8875 8.3215 -2.8383 19 7 5.7613 9.3650 -1.8179 20 6 6.5899 10.4549 -1.8470 21 1 7.3361 10.5453 -2.6225 22 6 6.4706 11.4434 -0.8798 23 7 5.5615 11.3329 0.0655 24 14 7.6014 12.9298 -0.9192 25 1 8.5287 12.8159 -2.0733 26 1 6.7897 14.1657 -1.0570 27 1 8.3842 12.9897 0.3413 28 6 5.0653 6.0773 -3.5670 29 6 4.0056 4.9975 -3.3258 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 4.1725 -0.1010 1.4222 38 1 3.4990 1.3736 2.1824 39 1 6.2730 0.8672 1.1137 40 1 5.7529 1.9271 2.4544 41 1 6.2726 2.6601 -0.3037 42 1 5.7529 3.7202 1.0363 43 1 2.9520 6.0807 -0.9156 44 1 4.1104 5.1872 0.1027 45 1 6.0036 6.2729 -1.0251 46 1 4.8821 7.5276 -0.4443 47 1 3.3335 8.4950 -2.1504 48 1 6.8888 7.8926 -2.7976 49 1 5.7177 8.7547 -3.8240 50 1 5.0913 9.2835 -1.1212 51 1 5.4785 12.0235 0.7415 52 1 6.0581 5.6515 -3.4218 53 1 4.9756 6.4537 -4.5860 54 1 4.2120 4.1350 -3.9594 55 1 3.0173 5.3940 -3.5588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502874490.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -123.732688 kcal Electronic energy + Delta-G solvation = -31234.241568 eV Core-core repulsion = 27269.058430 eV Total energy + Delta-G solvation = -3965.183138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72890 -40.17591 -38.57419 -36.77077 -35.79925 -35.37802 -33.52289 -32.71096 -31.76470 -30.68486 -30.13080 -28.14854 -26.18542 -25.55160 -24.51203 -23.68894 -22.47865 -22.08369 -21.19841 -20.82802 -19.68222 -19.44783 -18.41731 -17.29886 -17.11491 -16.73820 -16.36601 -16.05278 -15.92599 -15.81824 -15.65024 -15.46481 -15.00551 -14.72070 -14.67654 -14.51214 -14.18293 -14.11220 -13.86575 -13.56229 -13.45073 -13.27892 -13.14633 -12.98868 -12.82291 -12.73490 -12.62856 -12.29057 -12.25093 -12.19058 -12.07102 -12.04508 -11.98452 -11.73147 -11.56811 -11.38084 -11.29682 -11.28253 -11.23304 -10.99119 -10.83307 -10.62828 -9.64327 -9.02725 -7.97595 -5.25553 1.47213 1.48464 1.57456 1.57857 1.99420 2.54226 3.24424 3.37495 3.40747 3.56576 3.61910 3.67554 3.72712 3.89491 3.97549 4.06702 4.13425 4.20890 4.24286 4.32093 4.34737 4.42623 4.46576 4.50904 4.54968 4.59410 4.63304 4.72132 4.74065 4.76048 4.79315 4.81486 4.87851 4.92594 4.96724 4.99536 5.04513 5.06661 5.09154 5.15933 5.21721 5.23711 5.27169 5.31651 5.33965 5.45535 5.47134 5.49236 5.53638 5.59884 6.24908 6.41748 6.74447 7.15371 7.33057 8.03075 8.29539 9.25183 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002462 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.426479 B =11370.029235 C =11869.750797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.074 4.074 5 H 0.066 0.934 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.111 4.111 9 C -0.110 4.110 10 H 0.112 0.888 11 C 0.520 3.480 12 O -0.583 6.583 13 N -0.607 5.607 14 C 0.117 3.883 15 C -0.148 4.148 16 C 0.139 3.861 17 O -0.562 6.562 18 C 0.128 3.872 19 N -0.735 5.735 20 C -0.247 4.247 21 H 0.069 0.931 22 C -0.066 4.066 23 N -0.962 5.962 24 Si 0.968 3.032 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.111 4.111 29 C 0.122 3.878 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.382 0.618 48 H 0.024 0.976 49 H 0.020 0.980 50 H 0.378 0.622 51 H 0.253 0.747 52 H 0.078 0.922 53 H 0.086 0.914 54 H 0.081 0.919 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -22.248 3.524 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.085 0.915 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.149 4.149 9 C -0.131 4.131 10 H 0.130 0.870 11 C 0.310 3.690 12 O -0.464 6.464 13 N -0.338 5.338 14 C -0.005 4.005 15 C -0.187 4.187 16 C 0.098 3.902 17 O -0.369 6.369 18 C 0.001 3.999 19 N -0.380 5.380 20 C -0.378 4.378 21 H 0.087 0.913 22 C -0.259 4.259 23 N -0.612 5.612 24 Si 0.798 3.202 25 H -0.196 1.196 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.149 4.149 29 C -0.001 4.001 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.231 0.769 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.213 0.787 51 H 0.062 0.938 52 H 0.096 0.904 53 H 0.105 0.895 54 H 0.100 0.900 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.805 -23.034 2.529 24.151 hybrid contribution 0.642 1.808 0.275 1.939 sum -6.162 -21.226 2.805 22.280 Atomic orbital electron populations 1.21776 0.95503 1.01937 1.01752 1.21492 0.96092 0.96214 1.02030 1.21585 0.93782 0.97566 1.01599 1.22061 0.95408 0.93194 0.98647 0.91548 1.22414 0.95673 1.00993 0.95780 1.22112 0.97727 0.96301 0.99638 1.22073 0.93717 1.00473 0.98621 1.22355 0.99974 0.99812 0.90983 0.86958 1.21090 0.74514 0.81319 0.92061 1.90628 1.51261 1.51548 1.52945 1.48242 1.71571 1.06477 1.07555 1.21881 0.99465 0.87825 0.91322 1.22479 0.99970 0.99061 0.97187 1.21196 0.82433 0.91829 0.94733 1.86376 1.31487 1.54045 1.64963 1.21437 0.96984 0.89485 0.91978 1.42419 1.42018 1.21638 1.31932 1.19564 1.11257 0.98180 1.08845 0.91270 1.25440 1.00972 1.01648 0.97888 1.69758 1.37783 1.36136 1.17509 0.85157 0.78273 0.79579 0.77227 1.19615 1.22023 1.21919 1.21798 0.99623 0.93859 0.99634 1.21413 0.99381 0.97213 0.82068 0.93598 0.92166 0.92089 0.93208 0.90761 0.90491 0.94055 0.90633 0.89948 0.91848 0.90030 0.93294 0.90039 0.90168 0.87594 0.91227 0.90605 0.76877 0.95769 0.96202 0.78742 0.93845 0.90359 0.89525 0.90013 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.76 5.83 30.59 0.18 -1.58 16 3 C -0.11 -1.77 4.71 30.59 0.14 -1.62 16 4 C -0.07 -1.34 2.18 -9.49 -0.02 -1.36 16 5 H 0.07 1.56 7.28 -2.39 -0.02 1.54 16 6 C -0.11 -1.47 5.69 31.67 0.18 -1.29 16 7 C -0.12 -1.71 6.80 31.32 0.21 -1.50 16 8 C -0.11 -2.00 6.29 31.32 0.20 -1.80 16 9 C -0.11 -2.14 1.77 -10.46 -0.02 -2.16 16 10 H 0.11 1.80 6.30 -2.39 -0.02 1.79 16 11 C 0.52 13.72 6.66 87.66 0.58 14.30 16 12 O -0.58 -19.49 15.33 -3.04 -0.05 -19.54 16 13 N -0.61 -15.26 2.97 -818.03 -2.43 -17.69 16 14 C 0.12 2.65 5.95 86.51 0.52 3.17 16 15 C -0.15 -4.17 4.89 30.82 0.15 -4.02 16 16 C 0.14 4.26 0.71 -10.77 -0.01 4.25 16 17 O -0.56 -17.58 11.70 -148.98 -1.74 -19.33 16 18 C 0.13 4.95 5.43 86.38 0.47 5.42 16 19 N -0.74 -34.63 5.07 -343.45 -1.74 -36.37 16 20 C -0.25 -13.27 9.99 84.03 0.84 -12.43 16 21 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.96 -55.39 13.06 21.65 0.28 -55.11 16 24 Si 0.97 44.82 29.55 68.60 2.03 46.84 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 C -0.11 -2.99 5.11 30.67 0.16 -2.84 16 29 C 0.12 3.21 6.20 86.36 0.54 3.75 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 35 H 0.08 1.05 7.99 -2.39 -0.02 1.03 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 38 H 0.08 0.88 7.94 -2.38 -0.02 0.86 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 42 H 0.08 1.32 8.11 -2.38 -0.02 1.30 16 43 H 0.08 1.78 7.81 -2.39 -0.02 1.76 16 44 H 0.11 1.92 5.58 -2.39 -0.01 1.90 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.08 2.42 6.53 -2.39 -0.02 2.41 16 47 H 0.38 12.02 8.19 -74.06 -0.61 11.41 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.38 18.10 5.55 -92.71 -0.51 17.59 16 51 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 52 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 54 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 55 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 Total: -1.00 -64.60 416.13 1.39 -63.21 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.26 Total: 42.16 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.30 Total: -4.18 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.88 Total: -109.16 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.79 Total: -38.87 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.60 1.39 -63.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502874490.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.522 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds