Wall clock time and date at job start Wed Apr 1 2020 00:04:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47102 * 2 1
4 4 H 1.08999 * 109.47093 * 56.05199 * 3 2 1
5 5 O 1.42895 * 109.47178 * 296.04650 * 3 2 1
6 6 C 1.42907 * 113.99929 * 152.04816 * 5 3 2
7 7 H 1.09004 * 109.46988 * 32.57514 * 6 5 3
8 8 C 1.53003 * 109.46833 * 272.57430 * 6 5 3
9 9 C 1.53000 * 109.46721 * 179.97438 * 8 6 5
10 10 C 1.53000 * 109.47232 * 60.00337 * 9 8 6
11 11 C 1.53005 * 109.47113 * 299.99866 * 10 9 8
12 12 H 1.09004 * 109.47041 * 300.00079 * 11 10 9
13 13 C 1.52995 * 109.47434 * 179.97438 * 11 10 9
14 14 C 1.52995 * 109.47078 * 152.57399 * 6 5 3
15 15 C 1.50700 * 109.46820 * 176.04309 * 3 2 1
16 16 O 1.21283 * 119.99807 * 115.35479 * 15 3 2
17 17 N 1.34770 * 120.00646 * 295.34651 * 15 3 2
18 18 C 1.46960 * 120.59822 * 176.23388 * 17 15 3
19 19 C 1.53378 * 108.63744 * 235.25095 * 18 17 15
20 20 N 1.46965 * 108.63402 * 310.57639 * 19 18 17
21 21 C 1.36934 * 120.59019 * 235.20126 * 20 19 18
22 22 H 1.07999 * 120.00426 * 28.09759 * 21 20 19
23 23 C 1.38810 * 119.99436 * 208.09841 * 21 20 19
24 24 N 1.31618 * 120.00468 * 32.31307 * 23 21 20
25 25 Si 1.86805 * 119.99800 * 212.31563 * 23 21 20
26 26 H 1.48494 * 109.47523 * 180.02562 * 25 23 21
27 27 H 1.48501 * 109.47271 * 59.99920 * 25 23 21
28 28 H 1.48498 * 109.46869 * 300.00004 * 25 23 21
29 29 C 1.46959 * 118.81032 * 55.47841 * 20 19 18
30 30 C 1.46967 * 120.59381 * 356.26158 * 17 15 3
31 31 H 1.09005 * 109.46982 * 65.13823 * 1 2 3
32 32 H 1.09005 * 109.47281 * 185.13440 * 1 2 3
33 33 H 1.08994 * 109.47606 * 305.13180 * 1 2 3
34 34 H 1.08999 * 109.47536 * 239.99732 * 2 1 3
35 35 H 1.09006 * 109.47107 * 119.99988 * 2 1 3
36 36 H 1.09000 * 109.47129 * 300.00234 * 8 6 5
37 37 H 1.09001 * 109.47099 * 60.00020 * 8 6 5
38 38 H 1.09003 * 109.46928 * 180.02562 * 9 8 6
39 39 H 1.09000 * 109.47618 * 300.00067 * 9 8 6
40 40 H 1.09000 * 109.47040 * 59.99376 * 10 9 8
41 41 H 1.08995 * 109.47252 * 179.97438 * 10 9 8
42 42 H 1.09002 * 109.47197 * 59.99446 * 13 11 10
43 43 H 1.08995 * 109.47157 * 180.02562 * 13 11 10
44 44 H 1.09004 * 109.47117 * 300.00088 * 13 11 10
45 45 H 1.09003 * 109.47458 * 300.00079 * 14 6 5
46 46 H 1.09004 * 109.47117 * 60.00194 * 14 6 5
47 47 H 1.09000 * 109.60870 * 115.50956 * 18 17 15
48 48 H 1.09005 * 109.61009 * 354.99891 * 18 17 15
49 49 H 1.09000 * 109.60889 * 190.82771 * 19 18 17
50 50 H 1.09005 * 109.60453 * 70.32198 * 19 18 17
51 51 H 0.96999 * 119.99750 * 0.26721 * 24 23 21
52 52 H 1.09003 * 109.61465 * 64.26629 * 29 20 19
53 53 H 1.09000 * 109.60669 * 184.77710 * 29 20 19
54 54 H 1.08995 * 109.61339 * 244.49625 * 30 17 15
55 55 H 1.09004 * 109.60857 * 4.83473 * 30 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6200 1.9763 0.8525
5 8 1.6410 2.0887 -1.2104
6 6 1.4819 3.5037 -1.0887
7 1 2.1946 3.8880 -0.3588
8 6 0.0580 3.8188 -0.6260
9 6 -0.1121 5.3337 -0.4951
10 6 0.1414 5.9945 -1.8515
11 6 1.5653 5.6793 -2.3142
12 1 2.2780 6.0632 -1.5842
13 6 1.8187 6.3396 -3.6709
14 6 1.7353 4.1640 -2.4454
15 6 3.5437 1.4435 0.0980
16 8 4.2110 1.8718 -0.8198
17 7 4.1473 0.9688 1.2056
18 6 5.6126 0.8872 1.2824
19 6 6.0061 -0.5562 1.6205
20 7 5.2106 -1.0021 2.7729
21 6 5.8238 -1.4854 3.8979
22 1 6.8169 -1.1501 4.1580
23 6 5.1688 -2.4063 4.7040
24 7 4.3371 -3.2750 4.1691
25 14 5.4678 -2.4128 6.5479
26 1 4.6554 -3.4846 7.1774
27 1 5.0791 -1.0974 7.1171
28 1 6.9072 -2.6618 6.8150
29 6 3.7451 -0.9258 2.6940
30 6 3.3518 0.5228 2.3581
31 1 -0.3633 0.4321 -0.9325
32 1 -0.3634 -1.0236 0.0920
33 1 -0.3634 0.5913 0.8404
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5139 0.8900
36 1 -0.6546 3.4345 -1.3558
37 1 -0.1225 3.3484 0.3405
38 1 -1.1264 5.5582 -0.1650
39 1 0.6005 5.7177 0.2350
40 1 -0.5712 5.6106 -2.5815
41 1 0.0198 7.0737 -1.7583
42 1 1.6973 7.4188 -3.5781
43 1 2.8329 6.1146 -4.0007
44 1 1.1061 5.9553 -4.4008
45 1 2.7497 3.9394 -2.7750
46 1 1.0227 3.7797 -3.1752
47 1 5.9760 1.5574 2.0614
48 1 6.0455 1.1691 0.3225
49 1 7.0664 -0.5974 1.8699
50 1 5.8037 -1.2005 0.7648
51 1 4.1847 -3.2741 3.2112
52 1 3.3853 -1.5958 1.9131
53 1 3.3118 -1.2112 3.6526
54 1 3.5541 1.1671 3.2136
55 1 2.2914 0.5669 2.1097
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000073101243.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:04:31
Heat of formation + Delta-G solvation = -97.030670 kcal
Electronic energy + Delta-G solvation = -31842.617665 eV
Core-core repulsion = 27878.592414 eV
Total energy + Delta-G solvation = -3964.025251 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 3.89 seconds
Orbital eigenvalues (eV)
-41.68556 -40.17078 -38.73452 -37.79467 -35.99181 -34.72075 -33.22759 -33.05839
-31.96186 -30.80184 -29.17980 -27.65952 -27.32605 -25.39256 -24.59382 -23.44388
-22.98665 -22.57411 -21.99694 -20.73938 -20.36040 -19.24520 -18.48431 -17.86411
-17.01703 -16.61412 -16.25717 -16.18889 -15.96892 -15.68522 -15.63388 -15.43490
-15.22420 -15.11623 -14.91344 -14.71844 -14.39986 -14.12045 -13.79277 -13.70343
-13.36995 -13.28844 -13.04535 -12.93459 -12.83066 -12.76413 -12.62241 -12.46736
-12.32185 -12.19154 -12.09106 -11.98321 -11.91503 -11.87237 -11.76769 -11.64563
-11.47618 -11.41176 -11.28584 -10.92097 -10.44659 -10.22721 -9.95570 -8.89820
-8.37130 -5.40343 1.41462 1.61682 1.67007 1.81750 1.87539 2.52688
2.64077 3.14408 3.30914 3.41950 3.65979 3.72083 3.80874 3.82360
3.94963 4.03606 4.07136 4.13911 4.15493 4.20283 4.21936 4.31312
4.32470 4.43156 4.49143 4.49609 4.51930 4.56154 4.62881 4.64903
4.73533 4.76598 4.81969 4.87958 4.95366 4.95610 4.99987 5.05594
5.06721 5.11354 5.13444 5.16376 5.25606 5.28245 5.35823 5.38775
5.39423 5.40891 5.53262 5.84858 6.07521 6.32305 6.36862 6.97264
7.03031 7.71919 8.16997 8.92427
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.019554 B = 0.002711 C = 0.002611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.583682 B =10325.444577 C =10720.938813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.124 4.124
3 C 0.088 3.912
4 H 0.105 0.895
5 O -0.362 6.362
6 C 0.087 3.913
7 H 0.041 0.959
8 C -0.135 4.135
9 C -0.116 4.116
10 C -0.112 4.112
11 C -0.088 4.088
12 H 0.062 0.938
13 C -0.144 4.144
14 C -0.104 4.104
15 C 0.482 3.518
16 O -0.575 6.575
17 N -0.598 5.598
18 C 0.106 3.894
19 C 0.135 3.865
20 N -0.613 5.613
21 C -0.370 4.370
22 H 0.049 0.951
23 C -0.063 4.063
24 N -0.926 5.926
25 Si 1.113 2.887
26 H -0.292 1.292
27 H -0.275 1.275
28 H -0.281 1.281
29 C 0.146 3.854
30 C 0.092 3.908
31 H 0.062 0.938
32 H 0.066 0.934
33 H 0.070 0.930
34 H 0.057 0.943
35 H 0.086 0.914
36 H 0.074 0.926
37 H 0.069 0.931
38 H 0.082 0.918
39 H 0.059 0.941
40 H 0.068 0.932
41 H 0.076 0.924
42 H 0.068 0.932
43 H 0.047 0.953
44 H 0.060 0.940
45 H 0.045 0.955
46 H 0.071 0.929
47 H 0.070 0.930
48 H 0.082 0.918
49 H 0.067 0.933
50 H 0.008 0.992
51 H 0.254 0.746
52 H 0.013 0.987
53 H 0.066 0.934
54 H 0.074 0.926
55 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.649 17.922 -9.150 23.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.161 4.161
3 C 0.027 3.973
4 H 0.122 0.878
5 O -0.280 6.280
6 C 0.030 3.970
7 H 0.060 0.940
8 C -0.173 4.173
9 C -0.153 4.153
10 C -0.149 4.149
11 C -0.106 4.106
12 H 0.080 0.920
13 C -0.201 4.201
14 C -0.142 4.142
15 C 0.271 3.729
16 O -0.455 6.455
17 N -0.332 5.332
18 C -0.018 4.018
19 C 0.009 3.991
20 N -0.338 5.338
21 C -0.499 4.499
22 H 0.067 0.933
23 C -0.262 4.262
24 N -0.566 5.566
25 Si 0.937 3.063
26 H -0.218 1.218
27 H -0.201 1.201
28 H -0.207 1.207
29 C 0.019 3.981
30 C -0.032 4.032
31 H 0.081 0.919
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.076 0.924
35 H 0.104 0.896
36 H 0.093 0.907
37 H 0.087 0.913
38 H 0.101 0.899
39 H 0.078 0.922
40 H 0.087 0.913
41 H 0.095 0.905
42 H 0.087 0.913
43 H 0.066 0.934
44 H 0.079 0.921
45 H 0.064 0.936
46 H 0.089 0.911
47 H 0.088 0.912
48 H 0.101 0.899
49 H 0.086 0.914
50 H 0.026 0.974
51 H 0.063 0.937
52 H 0.031 0.969
53 H 0.084 0.916
54 H 0.093 0.907
55 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -12.716 17.302 -8.389 23.053
hybrid contribution 1.281 0.214 -1.409 1.916
sum -11.435 17.516 -9.797 23.099
Atomic orbital electron populations
1.21660 0.92067 1.02849 1.02951 1.21787 0.99242 0.91892 1.03196
1.22069 0.88200 0.97030 0.90031 0.87750 1.87991 1.87110 1.20879
1.31972 1.22283 0.96673 0.79971 0.98079 0.94049 1.22044 0.95680
0.97569 1.02022 1.21506 1.02623 0.93540 0.97667 1.21618 0.95356
1.01077 0.96858 1.21102 0.98137 0.93089 0.98283 0.91989 1.21791
1.01445 1.00933 0.95957 1.21577 1.01336 0.95464 0.95805 1.22080
0.92662 0.76872 0.81253 1.90625 1.67264 1.48442 1.39136 1.48134
1.07334 1.61998 1.15700 1.21974 0.80227 0.97853 1.01725 1.21318
0.95972 0.92650 0.89172 1.44297 1.01401 1.74315 1.13743 1.20076
1.03842 1.23892 1.02131 0.93287 1.27157 0.98764 0.90895 1.09342
1.70967 1.41860 1.30230 1.13503 0.82875 0.76188 0.76328 0.70887
1.21774 1.20125 1.20660 1.21287 0.84272 0.93245 0.99267 1.22621
0.96022 0.96614 0.87909 0.91918 0.91472 0.91068 0.92368 0.89627
0.90680 0.91265 0.89915 0.92230 0.91280 0.90493 0.91277 0.93428
0.92107 0.93647 0.91073 0.91167 0.89931 0.91407 0.97409 0.93681
0.96879 0.91604 0.90721 0.86983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.68 9.74 71.98 0.70 -1.98 16
2 C -0.12 -3.17 5.18 30.59 0.16 -3.01 16
3 C 0.09 2.40 1.48 29.85 0.04 2.45 16
4 H 0.10 2.34 6.76 -2.39 -0.02 2.32 16
5 O -0.36 -10.21 8.78 -129.98 -1.14 -11.35 16
6 C 0.09 2.04 2.37 30.59 0.07 2.11 16
7 H 0.04 1.08 7.78 -2.38 -0.02 1.06 16
8 C -0.14 -2.29 5.48 30.60 0.17 -2.12 16
9 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16
10 C -0.11 -1.45 5.20 30.60 0.16 -1.29 16
11 C -0.09 -1.48 2.72 -10.78 -0.03 -1.51 16
12 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16
13 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16
14 C -0.10 -2.32 4.86 30.61 0.15 -2.17 16
15 C 0.48 16.90 6.94 87.66 0.61 17.51 16
16 O -0.57 -24.03 15.90 15.96 0.25 -23.77 16
17 N -0.60 -21.04 2.95 -817.14 -2.41 -23.45 16
18 C 0.11 3.96 6.59 86.42 0.57 4.53 16
19 C 0.14 5.78 6.67 86.42 0.58 6.36 16
20 N -0.61 -29.62 2.80 -697.33 -1.95 -31.57 16
21 C -0.37 -19.93 9.40 84.03 0.79 -19.14 16
22 H 0.05 2.68 8.00 -2.91 -0.02 2.65 16
23 C -0.06 -3.43 4.45 84.86 0.38 -3.05 16
24 N -0.93 -53.67 12.67 21.65 0.27 -53.39 16
25 Si 1.11 48.36 30.02 68.60 2.06 50.42 16
26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16
27 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16
28 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16
29 C 0.15 6.24 4.82 86.57 0.42 6.66 16
30 C 0.09 3.03 5.66 86.57 0.49 3.52 16
31 H 0.06 1.22 7.93 -2.38 -0.02 1.20 16
32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16
33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.09 2.33 4.53 -2.38 -0.01 2.32 16
36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.07 1.09 7.71 -2.39 -0.02 1.07 16
38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
45 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
47 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
48 H 0.08 3.07 7.01 -2.38 -0.02 3.06 16
49 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16
50 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16
51 H 0.25 15.10 7.18 -92.71 -0.67 14.43 16
52 H 0.01 0.59 7.27 -2.39 -0.02 0.57 16
53 H 0.07 3.11 6.45 -2.39 -0.02 3.09 16
54 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
55 H 0.11 2.91 4.42 -2.38 -0.01 2.90 16
Total: -1.00 -67.25 412.51 4.12 -63.13
By element:
Atomic # 1 Polarization: 22.98 SS G_CDS: 0.94 Total: 23.92 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: 6.09 Total: 6.06 kcal
Atomic # 7 Polarization: -104.32 SS G_CDS: -4.09 Total: -108.41 kcal
Atomic # 8 Polarization: -34.23 SS G_CDS: -0.89 Total: -35.12 kcal
Atomic # 14 Polarization: 48.36 SS G_CDS: 2.06 Total: 50.42 kcal
Total: -67.25 4.12 -63.13 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000073101243.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.901 kcal
(2) G-P(sol) polarization free energy of solvation -67.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.89 seconds