Wall clock time and date at job start Wed Apr 1 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46705 * 2 1 4 4 H 1.08992 * 109.47430 * 54.17459 * 3 2 1 5 5 O 1.42902 * 109.46865 * 294.17164 * 3 2 1 6 6 C 1.42906 * 113.99660 * 152.27216 * 5 3 2 7 7 C 1.54884 * 110.75335 * 154.04416 * 6 5 3 8 8 C 1.54269 * 104.31032 * 156.32441 * 7 6 5 9 9 C 1.53864 * 106.60029 * 336.32227 * 8 7 6 10 10 C 1.54272 * 106.59898 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46598 * 174.17575 * 3 2 1 12 12 O 1.21289 * 119.99863 * 120.00440 * 11 3 2 13 13 N 1.34778 * 120.00104 * 299.99622 * 11 3 2 14 14 C 1.46498 * 120.00085 * 180.02562 * 13 11 3 15 15 C 1.52995 * 109.47296 * 180.02562 * 14 13 11 16 16 C 1.53042 * 109.45717 * 295.02361 * 15 14 13 17 17 C 1.53195 * 109.31451 * 178.60072 * 16 15 14 18 18 N 1.46926 * 108.76404 * 54.65364 * 17 16 15 19 19 C 1.36935 * 120.63103 * 126.36242 * 18 17 16 20 20 H 1.08003 * 120.00073 * 330.61867 * 19 18 17 21 21 C 1.38814 * 119.99909 * 150.61576 * 19 18 17 22 22 N 1.31619 * 120.00249 * 344.47356 * 21 19 18 23 23 Si 1.86802 * 119.99968 * 164.47732 * 21 19 18 24 24 H 1.48503 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47103 * 119.99788 * 23 21 19 26 26 H 1.48501 * 109.47173 * 240.00110 * 23 21 19 27 27 C 1.46925 * 118.74002 * 306.38675 * 18 17 16 28 28 C 1.53040 * 109.46112 * 174.96979 * 15 14 13 29 29 H 1.09001 * 109.46768 * 185.32185 * 1 2 3 30 30 H 1.09004 * 109.46852 * 305.31759 * 1 2 3 31 31 H 1.08992 * 109.46790 * 65.31519 * 1 2 3 32 32 H 1.08991 * 109.47259 * 240.00529 * 2 1 3 33 33 H 1.09000 * 109.47402 * 119.99807 * 2 1 3 34 34 H 1.09010 * 110.81409 * 30.71045 * 6 5 3 35 35 H 1.09000 * 110.49004 * 37.58283 * 7 6 5 36 36 H 1.09006 * 110.48910 * 275.06554 * 7 6 5 37 37 H 1.09001 * 110.03006 * 95.61228 * 8 7 6 38 38 H 1.09005 * 110.03047 * 217.03415 * 8 7 6 39 39 H 1.08999 * 110.03272 * 119.28291 * 9 8 7 40 40 H 1.09002 * 110.03532 * 240.66677 * 9 8 7 41 41 H 1.08999 * 110.48599 * 142.28659 * 10 9 8 42 42 H 1.08998 * 110.48206 * 264.79908 * 10 9 8 43 43 H 0.96993 * 119.99790 * 359.97438 * 13 11 3 44 44 H 1.09002 * 109.46671 * 299.99720 * 14 13 11 45 45 H 1.09004 * 109.47591 * 59.99567 * 14 13 11 46 46 H 1.08995 * 109.46053 * 54.99340 * 15 14 13 47 47 H 1.08999 * 109.50083 * 298.56230 * 16 15 14 48 48 H 1.09003 * 109.50083 * 58.66221 * 16 15 14 49 49 H 1.09003 * 109.59616 * 294.87172 * 17 16 15 50 50 H 1.08997 * 109.70371 * 174.50576 * 17 16 15 51 51 H 0.96997 * 120.00258 * 180.02562 * 22 21 19 52 52 H 1.09004 * 109.58497 * 293.81874 * 27 18 17 53 53 H 1.09001 * 109.70744 * 173.46682 * 27 18 17 54 54 H 1.08998 * 109.49998 * 301.33399 * 28 15 14 55 55 H 1.09000 * 109.49645 * 61.43620 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5940 1.9856 0.8332 5 8 1.6786 2.0755 -1.2292 6 6 1.5209 3.4923 -1.1290 7 6 1.7771 4.1712 -2.4973 8 6 1.0108 5.5072 -2.4095 9 6 -0.0919 5.3130 -1.3543 10 6 0.0430 3.8659 -0.8370 11 6 3.5401 1.4450 0.1442 12 8 4.2316 1.9402 -0.7205 13 7 4.1132 0.8971 1.2340 14 6 5.5714 0.8999 1.3745 15 6 5.9585 0.2216 2.6901 16 6 5.4363 1.0521 3.8647 17 6 5.7952 0.3521 5.1793 18 7 7.2446 0.1127 5.2069 19 6 8.0030 0.5444 6.2622 20 1 7.7052 1.4210 6.8184 21 6 9.1546 -0.1446 6.6170 22 7 9.3611 -1.3612 6.1591 23 14 10.4114 0.6547 7.7444 24 1 9.9472 2.0152 8.1173 25 1 10.5704 -0.1679 8.9705 26 1 11.7157 0.7527 7.0413 27 6 7.8648 -0.5982 4.0806 28 6 7.4824 0.1122 2.7783 29 1 -0.3633 -1.0233 0.0953 30 1 -0.3633 0.5941 0.8386 31 1 -0.3632 0.4292 -0.9337 32 1 1.8934 -0.5137 -0.8899 33 1 1.8935 -0.5138 0.8900 34 1 2.1811 3.9024 -0.3646 35 1 1.3826 3.5578 -3.3074 36 1 2.8426 4.3512 -2.6404 37 1 1.6862 6.3054 -2.1014 38 1 0.5655 5.7464 -3.3753 39 1 0.0482 6.0169 -0.5339 40 1 -1.0725 5.4588 -1.8076 41 1 -0.1571 3.8232 0.2336 42 1 -0.6331 3.2032 -1.3773 43 1 3.5602 0.5015 1.9257 44 1 6.0177 0.3571 0.5412 45 1 5.9345 1.9277 1.3746 46 1 5.5201 -0.7756 2.7272 47 1 5.8935 2.0413 3.8426 48 1 4.3533 1.1495 3.7885 49 1 5.2665 -0.5990 5.2432 50 1 5.5131 0.9843 6.0212 51 1 10.1656 -1.8428 6.4073 52 1 7.5048 -1.6268 4.0550 53 1 8.9488 -0.5933 4.1949 54 1 7.8560 -0.4594 1.9288 55 1 7.9201 1.1104 2.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081733569.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:47 Heat of formation + Delta-G solvation = -111.715438 kcal Electronic energy + Delta-G solvation = -30380.271006 eV Core-core repulsion = 26415.608976 eV Total energy + Delta-G solvation = -3964.662031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.29344 -39.79644 -39.12898 -37.21562 -36.39548 -34.76766 -33.97592 -32.49032 -31.41519 -29.63875 -29.37919 -28.56038 -27.33976 -25.53687 -23.85812 -23.13547 -22.59770 -21.73487 -21.53103 -21.06582 -20.64229 -18.78116 -18.40898 -18.27114 -16.99267 -16.82321 -16.72980 -16.26816 -15.78816 -15.71576 -15.30817 -15.28575 -15.16789 -14.89778 -14.73727 -14.51047 -14.14130 -14.04018 -13.85572 -13.51408 -13.38987 -13.22187 -13.04631 -13.00078 -12.86552 -12.78975 -12.60002 -12.25509 -12.18310 -12.06427 -11.99480 -11.95615 -11.85362 -11.81475 -11.62848 -11.49798 -11.33017 -11.27934 -11.16137 -11.10160 -10.55622 -10.20621 -10.10193 -8.64847 -7.87416 -5.33973 1.44662 1.47067 1.54199 1.56963 2.06847 2.50596 2.65762 3.27432 3.57322 3.68912 3.70708 3.71508 3.82404 3.88989 3.94080 3.97164 4.01529 4.08531 4.24075 4.39622 4.50137 4.50756 4.53934 4.57106 4.60302 4.66379 4.69059 4.72877 4.75732 4.81040 4.86810 4.92546 4.93560 5.02556 5.05945 5.10432 5.12552 5.14206 5.17447 5.25113 5.28523 5.29354 5.29551 5.37660 5.44683 5.45295 5.45973 5.55470 5.66134 5.78889 6.13997 6.40786 6.55715 7.16160 7.21384 7.88182 8.39148 9.18691 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002055 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.695603 B =13624.621887 C =14055.250414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.110 0.890 5 O -0.360 6.360 6 C 0.077 3.923 7 C -0.121 4.121 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.139 4.139 11 C 0.482 3.518 12 O -0.577 6.577 13 N -0.710 5.710 14 C 0.136 3.864 15 C -0.077 4.077 16 C -0.114 4.114 17 C 0.140 3.860 18 N -0.613 5.613 19 C -0.260 4.260 20 H 0.064 0.936 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.179 3.821 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.415 0.585 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.052 0.948 51 H 0.249 0.751 52 H 0.000 1.000 53 H 0.049 0.951 54 H 0.067 0.933 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.107 8.162 -14.586 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.128 0.872 5 O -0.278 6.278 6 C 0.020 3.980 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.159 4.159 10 C -0.177 4.177 11 C 0.269 3.731 12 O -0.456 6.456 13 N -0.364 5.364 14 C 0.012 3.988 15 C -0.096 4.096 16 C -0.153 4.153 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.053 3.947 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.018 0.982 53 H 0.067 0.933 54 H 0.085 0.915 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.538 8.341 -15.338 28.509 hybrid contribution 1.372 -0.023 1.146 1.788 sum -21.166 8.318 -14.192 26.806 Atomic orbital electron populations 1.21693 0.93091 1.02800 1.02506 1.21639 0.98385 0.91334 1.03803 1.22290 0.88488 0.97828 0.89633 0.87204 1.87984 1.88148 1.20424 1.31237 1.23344 0.96449 0.80173 0.98076 1.22350 1.00133 0.96763 0.96609 1.22082 0.97499 0.95943 1.00339 1.22058 0.99367 0.95863 0.98588 1.22875 0.95477 0.97416 1.01936 1.22081 0.92589 0.77256 0.81186 1.90692 1.65800 1.46882 1.42251 1.46003 1.07839 1.59940 1.22663 1.21247 0.80207 1.00246 0.97070 1.21137 0.95853 0.99527 0.93039 1.21930 1.00621 0.98297 0.94409 1.21085 0.84037 0.97015 0.96422 1.44325 1.02921 1.67167 1.19222 1.19518 1.05381 1.05945 1.08183 0.91817 1.25819 1.02521 0.95520 1.00863 1.70166 1.27380 1.11069 1.49489 0.85252 0.79031 0.78288 0.78155 1.19144 1.21838 1.21829 1.20540 0.97494 0.91696 0.84990 1.21988 0.95435 1.00572 0.98283 0.91243 0.91382 0.92820 0.91900 0.88240 0.92624 0.91100 0.92854 0.91537 0.90365 0.91088 0.90239 0.90503 0.90426 0.74793 0.92339 0.92884 0.90242 0.93294 0.89482 0.96211 0.92982 0.94160 0.98231 0.93287 0.91467 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.76 71.98 0.70 -0.82 16 2 C -0.11 -1.56 5.59 30.60 0.17 -1.39 16 3 C 0.08 1.42 2.37 29.85 0.07 1.49 16 4 H 0.11 1.43 7.85 -2.39 -0.02 1.41 16 5 O -0.36 -7.92 9.02 -129.94 -1.17 -9.09 16 6 C 0.08 1.48 3.03 32.00 0.10 1.57 16 7 C -0.12 -2.29 6.54 31.67 0.21 -2.09 16 8 C -0.12 -1.63 6.80 31.32 0.21 -1.42 16 9 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 10 C -0.14 -1.83 6.57 31.78 0.21 -1.62 16 11 C 0.48 11.95 7.11 87.66 0.62 12.58 16 12 O -0.58 -19.95 16.40 15.98 0.26 -19.69 16 13 N -0.71 -15.05 5.13 -463.06 -2.37 -17.43 16 14 C 0.14 3.59 5.06 86.38 0.44 4.03 16 15 C -0.08 -2.21 2.19 -10.77 -0.02 -2.23 16 16 C -0.11 -3.34 5.25 30.67 0.16 -3.18 16 17 C 0.14 5.38 6.52 86.36 0.56 5.95 16 18 N -0.61 -30.13 2.99 -699.07 -2.09 -32.22 16 19 C -0.26 -14.22 9.58 84.03 0.80 -13.42 16 20 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 21 C -0.05 -2.90 4.94 84.86 0.42 -2.48 16 22 N -0.93 -55.29 11.20 21.65 0.24 -55.05 16 23 Si 0.96 44.97 29.58 68.60 2.03 47.00 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.18 8.46 5.28 86.36 0.46 8.92 16 28 C -0.12 -4.46 5.36 30.67 0.16 -4.30 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.68 7.99 -2.39 -0.02 0.66 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.99 7.41 -2.39 -0.02 0.98 16 34 H 0.06 1.18 7.85 -2.38 -0.02 1.16 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.41 6.26 7.00 -92.71 -0.65 5.61 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 1.88 7.15 -2.39 -0.02 1.86 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 51 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 52 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 53 H 0.05 2.68 6.12 -2.39 -0.01 2.66 16 54 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 55 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.06 424.59 2.57 -68.49 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.18 Total: 17.56 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.49 Total: 0.43 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.22 Total: -104.70 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.91 Total: -28.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.06 2.57 -68.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733569.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.225 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds