Wall clock time and date at job start Tue Mar 31 2020 22:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.08996 * 109.48375 * 305.02251 * 3 2 1 5 5 C 1.53096 * 109.47910 * 184.99646 * 3 2 1 6 6 C 1.53181 * 109.15775 * 182.39550 * 5 3 2 7 7 H 1.08995 * 109.54890 * 297.02750 * 6 5 3 8 8 C 1.53007 * 109.53835 * 176.84858 * 6 5 3 9 9 C 1.50702 * 109.46984 * 175.00179 * 8 6 5 10 10 O 1.21278 * 119.99884 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00172 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00410 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47291 * 180.02562 * 12 11 9 14 14 C 1.53044 * 109.46024 * 175.00128 * 13 12 11 15 15 C 1.53184 * 109.31171 * 181.38608 * 14 13 12 16 16 N 1.46926 * 108.77681 * 305.36374 * 15 14 13 17 17 C 1.36939 * 120.63016 * 233.58538 * 16 15 14 18 18 H 1.08003 * 119.99890 * 152.33160 * 17 16 15 19 19 C 1.38814 * 120.00481 * 332.05819 * 17 16 15 20 20 N 1.31623 * 119.99570 * 343.02962 * 19 17 16 21 21 Si 1.86795 * 120.00018 * 163.02714 * 19 17 16 22 22 H 1.48497 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46823 * 120.00388 * 21 19 17 24 24 H 1.48503 * 109.46796 * 240.00042 * 21 19 17 25 25 C 1.46927 * 118.73914 * 53.86068 * 16 15 14 26 26 C 1.53043 * 109.46103 * 295.07011 * 13 12 11 27 27 C 1.53177 * 109.03830 * 56.98700 * 6 5 3 28 28 C 1.53093 * 109.15906 * 303.01771 * 27 6 5 29 29 O 1.42897 * 109.42085 * 57.60915 * 28 27 6 30 30 H 1.08997 * 109.47737 * 299.99988 * 1 2 3 31 31 H 1.09007 * 109.47201 * 60.00343 * 1 2 3 32 32 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47208 * 239.99648 * 2 1 3 34 34 H 1.09005 * 109.46847 * 120.00342 * 2 1 3 35 35 H 1.08999 * 109.51579 * 62.49769 * 5 3 2 36 36 H 1.08988 * 109.52465 * 302.30303 * 5 3 2 37 37 H 1.09004 * 109.47157 * 55.00619 * 8 6 5 38 38 H 1.08996 * 109.46909 * 295.00299 * 8 6 5 39 39 H 0.97004 * 120.00064 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46569 * 59.99800 * 12 11 9 41 41 H 1.09005 * 109.47053 * 300.00482 * 12 11 9 42 42 H 1.09001 * 109.44948 * 55.03597 * 13 12 11 43 43 H 1.09003 * 109.49636 * 61.43172 * 14 13 12 44 44 H 1.09001 * 109.52007 * 301.35259 * 14 13 12 45 45 H 1.09004 * 109.58775 * 185.57900 * 15 14 13 46 46 H 1.08996 * 109.59068 * 65.15202 * 15 14 13 47 47 H 0.96995 * 119.99600 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.58235 * 65.92657 * 25 16 15 49 49 H 1.09001 * 109.58777 * 186.34828 * 25 16 15 50 50 H 1.09001 * 109.49114 * 298.56536 * 26 13 12 51 51 H 1.09001 * 109.49810 * 58.62772 * 26 13 12 52 52 H 1.08997 * 109.52197 * 62.91862 * 27 6 5 53 53 H 1.08998 * 109.52402 * 183.11158 * 27 6 5 54 54 H 1.09003 * 109.47876 * 297.61877 * 28 27 6 55 55 H 1.09003 * 109.48960 * 177.59883 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4445 -0.1257 6 6 4.0732 2.8885 -0.0647 7 1 3.6803 3.4493 -0.9128 8 6 5.6026 2.8958 -0.1106 9 6 6.0964 4.3182 -0.1744 10 8 5.3033 5.2357 -0.1819 11 7 7.4195 4.5707 -0.2221 12 6 7.8996 5.9533 -0.2847 13 6 9.4288 5.9606 -0.3304 14 6 9.9264 7.3953 -0.5212 15 6 11.4561 7.3946 -0.6012 16 7 11.9917 6.7237 0.5911 17 6 12.9215 7.3441 1.3823 18 1 12.9873 7.0988 2.4320 19 6 13.7832 8.2842 0.8339 20 7 13.9467 8.3450 -0.4707 21 14 14.7104 9.4629 1.9475 22 1 14.3534 9.1909 3.3631 23 1 16.1715 9.2750 1.7600 24 1 14.3430 10.8603 1.6046 25 6 11.5154 5.3721 0.9151 26 6 9.9809 5.3976 0.9812 27 6 3.5968 3.5308 1.2417 28 6 2.0698 3.4481 1.3146 29 8 1.6631 2.0814 1.2215 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.8533 0.9972 -1.0772 36 1 3.9995 0.8711 0.6934 37 1 5.9422 2.3534 -0.9930 38 1 5.9952 2.4146 0.7851 39 1 8.0538 3.8368 -0.2157 40 1 7.5594 6.4962 0.5972 41 1 7.5073 6.4340 -1.1809 42 1 9.7700 5.3444 -1.1622 43 1 9.6064 8.0066 0.3227 44 1 9.5140 7.8042 -1.4436 45 1 11.8207 8.4212 -0.6376 46 1 11.7750 6.8595 -1.4957 47 1 14.5485 9.0021 -0.8538 48 1 11.8390 4.6755 0.1417 49 1 11.9191 5.0638 1.8796 50 1 9.6604 6.0277 1.8109 51 1 9.6068 4.3844 1.1283 52 1 4.0312 2.9995 2.0884 53 1 3.9067 4.5755 1.2682 54 1 1.6354 4.0137 0.4903 55 1 1.7279 3.8654 2.2618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330793875.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:42 Heat of formation + Delta-G solvation = -118.039300 kcal Electronic energy + Delta-G solvation = -29787.336240 eV Core-core repulsion = 25822.399986 eV Total energy + Delta-G solvation = -3964.936254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.21589 -40.19561 -39.28324 -36.48828 -35.53247 -34.84838 -34.45782 -32.58106 -31.42764 -30.74415 -30.08817 -28.16028 -25.92915 -24.95617 -24.37194 -23.80537 -22.68269 -22.04228 -21.39706 -20.89715 -20.56265 -18.72442 -17.96062 -17.35187 -17.08051 -16.82198 -16.68509 -16.58836 -15.81313 -15.55925 -15.44344 -15.31469 -15.27054 -14.86045 -14.62106 -14.50460 -14.16949 -14.02829 -14.00627 -13.75720 -13.57775 -13.35730 -13.01764 -12.87751 -12.71709 -12.63097 -12.58891 -12.41567 -12.23961 -12.05177 -11.98654 -11.95470 -11.85481 -11.71391 -11.61971 -11.43686 -11.23138 -11.15099 -11.09854 -10.73776 -10.54183 -10.29820 -9.99860 -8.67143 -7.87735 -5.32467 1.44620 1.47197 1.57134 1.72296 2.28074 2.50803 2.88780 3.26808 3.65048 3.69985 3.71359 3.82540 3.85428 3.95262 4.03743 4.07267 4.13923 4.24976 4.29669 4.42189 4.45833 4.52211 4.54135 4.54545 4.57804 4.69656 4.72159 4.73344 4.78024 4.81266 4.86323 4.93653 4.94487 4.99132 5.02436 5.06225 5.13925 5.14694 5.19368 5.24220 5.28267 5.29013 5.31434 5.40589 5.45448 5.47852 5.52916 5.56401 5.65966 5.78970 6.35794 6.39713 6.63903 7.15640 7.33886 7.88154 8.38471 9.18282 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.001662 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.069028 B =16844.269243 C =16899.854628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.083 3.917 4 H 0.053 0.947 5 C -0.138 4.138 6 C -0.071 4.071 7 H 0.062 0.938 8 C -0.128 4.128 9 C 0.506 3.494 10 O -0.583 6.583 11 N -0.718 5.718 12 C 0.137 3.863 13 C -0.078 4.078 14 C -0.123 4.123 15 C 0.177 3.823 16 N -0.612 5.612 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.139 3.861 26 C -0.113 4.113 27 C -0.152 4.152 28 C 0.063 3.937 29 O -0.395 6.395 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.414 0.586 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.050 0.950 46 H -0.001 1.001 47 H 0.249 0.751 48 H 0.020 0.980 49 H 0.051 0.949 50 H 0.048 0.952 51 H 0.086 0.914 52 H 0.067 0.933 53 H 0.069 0.931 54 H 0.044 0.956 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.951 -18.216 -0.877 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.025 3.975 4 H 0.071 0.929 5 C -0.176 4.176 6 C -0.090 4.090 7 H 0.080 0.920 8 C -0.168 4.168 9 C 0.294 3.706 10 O -0.463 6.463 11 N -0.371 5.371 12 C 0.013 3.987 13 C -0.096 4.096 14 C -0.162 4.162 15 C 0.052 3.948 16 N -0.336 5.336 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.013 3.987 26 C -0.152 4.152 27 C -0.189 4.189 28 C -0.013 4.013 29 O -0.314 6.314 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.017 0.983 47 H 0.058 0.942 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.104 0.896 52 H 0.086 0.914 53 H 0.088 0.912 54 H 0.063 0.937 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.496 -17.573 -0.800 30.158 hybrid contribution 1.428 1.170 0.157 1.852 sum -23.069 -16.403 -0.643 28.313 Atomic orbital electron populations 1.21713 0.95537 1.01931 1.01570 1.21572 0.96511 0.93562 1.03457 1.22303 0.94160 0.94515 0.86473 0.92946 1.22256 0.95524 0.95661 1.04149 1.20901 0.93761 0.96468 0.97882 0.91964 1.21770 0.96396 0.91971 1.06639 1.21319 0.81841 0.92673 0.74745 1.90657 1.55703 1.48531 1.51436 1.46035 1.07393 1.09055 1.74579 1.21196 0.93262 0.83227 1.01016 1.21139 0.92718 0.97037 0.98752 1.21981 0.97152 0.96249 1.00856 1.20565 0.89902 0.97142 0.87232 1.44352 1.46540 1.13655 1.29033 1.19549 1.09480 1.19033 0.91117 0.91753 1.25762 0.98689 1.03328 0.96851 1.70182 1.39759 1.36970 1.11177 0.85261 0.77763 0.78770 0.78992 1.19193 1.21861 1.21801 1.21178 0.93505 0.85910 0.98069 1.21988 0.95768 1.00905 0.96513 1.22281 0.96531 1.02169 0.97966 1.22541 0.94030 0.82659 1.02080 1.87891 1.79025 1.25055 1.39470 0.93503 0.92855 0.91761 0.88816 0.91332 0.88849 0.90332 0.86132 0.86818 0.74914 0.92998 0.92359 0.90458 0.93338 0.91444 0.93144 0.98306 0.94166 0.96245 0.93046 0.93347 0.89557 0.91396 0.91202 0.93726 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 71.98 0.71 -1.00 16 2 C -0.11 -1.22 5.64 30.59 0.17 -1.05 16 3 C 0.08 1.15 2.64 30.63 0.08 1.23 16 4 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 5 C -0.14 -1.56 4.71 30.69 0.14 -1.41 16 6 C -0.07 -1.09 1.92 -10.67 -0.02 -1.11 16 7 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 8 C -0.13 -1.64 5.18 29.85 0.15 -1.48 16 9 C 0.51 10.70 7.57 87.66 0.66 11.37 16 10 O -0.58 -17.31 14.00 -3.02 -0.04 -17.35 16 11 N -0.72 -14.11 5.27 -463.07 -2.44 -16.55 16 12 C 0.14 3.48 5.06 86.38 0.44 3.92 16 13 C -0.08 -2.22 2.19 -10.77 -0.02 -2.24 16 14 C -0.12 -4.43 5.36 30.67 0.16 -4.26 16 15 C 0.18 8.40 5.30 86.36 0.46 8.86 16 16 N -0.61 -30.16 2.99 -698.27 -2.09 -32.25 16 17 C -0.26 -14.35 9.58 84.03 0.81 -13.55 16 18 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 19 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 20 N -0.93 -55.24 11.18 21.65 0.24 -55.00 16 21 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.14 5.38 6.54 86.51 0.57 5.95 16 26 C -0.11 -3.33 5.26 30.82 0.16 -3.17 16 27 C -0.15 -2.79 5.13 30.68 0.16 -2.63 16 28 C 0.06 1.14 6.84 72.01 0.49 1.63 16 29 O -0.39 -7.37 9.95 -148.98 -1.48 -8.85 16 30 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.41 5.87 7.65 -92.71 -0.71 5.16 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 2.76 6.04 -2.38 -0.01 2.74 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.09 1.89 7.15 -2.39 -0.02 1.88 16 52 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.07 1.64 6.07 -2.39 -0.01 1.63 16 54 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 55 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.55 417.61 1.89 -67.66 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.13 Total: 16.70 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.54 Total: -1.38 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.28 Total: -103.80 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -1.52 Total: -26.20 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.55 1.89 -67.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330793875.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.380 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds