Wall clock time and date at job start Tue Mar 31 2020 22:10:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53002 * 109.47001 * 2 1
4 4 H 1.08996 * 109.48006 * 304.99754 * 3 2 1
5 5 C 1.53092 * 109.47698 * 184.97756 * 3 2 1
6 6 C 1.53196 * 109.15141 * 297.61377 * 5 3 2
7 7 H 1.08996 * 109.54161 * 62.89858 * 6 5 3
8 8 C 1.52999 * 109.61164 * 183.11500 * 6 5 3
9 9 C 1.50708 * 109.46816 * 184.60312 * 8 6 5
10 10 O 1.21268 * 120.00158 * 0.02562 * 9 8 6
11 11 N 1.34778 * 119.99433 * 180.02562 * 9 8 6
12 12 C 1.46500 * 119.99577 * 180.02562 * 11 9 8
13 13 C 1.53001 * 109.47330 * 179.97438 * 12 11 9
14 14 C 1.53045 * 109.45776 * 295.07143 * 13 12 11
15 15 C 1.53195 * 109.30843 * 178.61345 * 14 13 12
16 16 N 1.46925 * 108.78067 * 54.63482 * 15 14 13
17 17 C 1.36935 * 120.63462 * 126.41050 * 16 15 14
18 18 H 1.07993 * 120.00163 * 207.66707 * 17 16 15
19 19 C 1.38817 * 119.99668 * 27.66249 * 17 16 15
20 20 N 1.31612 * 119.99836 * 17.37191 * 19 17 16
21 21 Si 1.86802 * 119.99774 * 197.36704 * 19 17 16
22 22 H 1.48494 * 109.47152 * 90.00276 * 21 19 17
23 23 H 1.48494 * 109.47032 * 210.00327 * 21 19 17
24 24 H 1.48499 * 109.47189 * 330.00174 * 21 19 17
25 25 C 1.46931 * 118.73553 * 306.39350 * 16 15 14
26 26 C 1.53035 * 109.46261 * 175.00046 * 13 12 11
27 27 C 1.53177 * 109.04153 * 303.02751 * 6 5 3
28 28 C 1.53089 * 109.16388 * 56.98147 * 27 6 5
29 29 O 1.42896 * 109.41359 * 302.38933 * 28 27 6
30 30 H 1.08991 * 109.47256 * 60.00112 * 1 2 3
31 31 H 1.09006 * 109.46948 * 299.99831 * 1 2 3
32 32 H 1.08998 * 109.47122 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.46947 * 119.99487 * 2 1 3
34 34 H 1.08994 * 109.47063 * 239.99789 * 2 1 3
35 35 H 1.09004 * 109.52163 * 57.53377 * 5 3 2
36 36 H 1.09000 * 109.52170 * 177.71539 * 5 3 2
37 37 H 1.08997 * 109.47235 * 304.60415 * 8 6 5
38 38 H 1.09008 * 109.47213 * 64.60831 * 8 6 5
39 39 H 0.97001 * 120.00897 * 359.97438 * 11 9 8
40 40 H 1.09000 * 109.47583 * 300.00095 * 12 11 9
41 41 H 1.09001 * 109.47112 * 60.00403 * 12 11 9
42 42 H 1.08997 * 109.45761 * 55.02516 * 13 12 11
43 43 H 1.09001 * 109.49914 * 298.56049 * 14 13 12
44 44 H 1.08997 * 109.50043 * 58.65941 * 14 13 12
45 45 H 1.08998 * 109.58849 * 294.84155 * 15 14 13
46 46 H 1.09000 * 109.58658 * 174.41995 * 15 14 13
47 47 H 0.97001 * 119.99669 * 179.97438 * 20 19 17
48 48 H 1.09007 * 109.58300 * 293.81687 * 25 16 15
49 49 H 1.08998 * 109.58771 * 173.39614 * 25 16 15
50 50 H 1.09000 * 109.49884 * 301.33765 * 26 13 12
51 51 H 1.09005 * 109.49908 * 61.43422 * 26 13 12
52 52 H 1.09001 * 109.52422 * 297.07119 * 27 6 5
53 53 H 1.09008 * 109.57605 * 176.91915 * 27 6 5
54 54 H 1.09000 * 109.47828 * 182.40707 * 28 27 6
55 55 H 1.09002 * 109.49016 * 62.38123 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9817 -0.8418
5 6 3.5658 1.4445 -0.1252
6 6 4.1709 0.7376 1.0917
7 1 3.8499 -0.3039 1.1053
8 6 5.6977 0.8016 1.0162
9 6 6.2905 0.0093 2.1530
10 8 5.5634 -0.5515 2.9451
11 7 7.6286 -0.0758 2.2892
12 6 8.2049 -0.8464 3.3939
13 6 9.7317 -0.7823 3.3185
14 6 10.2089 -1.4809 2.0432
15 6 11.7352 -1.3846 1.9537
16 7 12.3165 -1.9238 3.1906
17 6 13.2660 -2.9094 3.1436
18 1 13.3690 -3.5998 3.9677
19 6 14.0961 -3.0212 2.0366
20 7 14.2186 -2.0115 1.2013
21 14 15.0392 -4.6047 1.7325
22 1 14.2175 -5.5179 0.8982
23 1 16.3087 -4.2969 1.0264
24 1 15.3412 -5.2582 3.0314
25 6 11.8599 -1.3851 4.4791
26 6 10.3323 -1.4813 4.5403
27 6 3.6911 1.4384 2.3665
28 6 2.1605 1.4366 2.3952
29 8 1.6626 2.0815 1.2213
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 0.5138 0.8901
32 1 -0.3633 -1.0276 0.0005
33 1 1.8934 -0.5138 0.8901
34 1 1.8934 -0.5138 -0.8899
35 1 3.8574 0.9188 -1.0345
36 1 3.9266 2.4723 -0.1661
37 1 6.0325 0.3820 0.0676
38 1 6.0219 1.8398 1.0890
39 1 8.2103 0.3725 1.6554
40 1 7.8698 -0.4276 4.3428
41 1 7.8811 -1.8846 3.3204
42 1 10.0511 0.2597 3.3027
43 1 9.9115 -2.5292 2.0695
44 1 9.7623 -0.9972 1.1745
45 1 12.0293 -0.3417 1.8360
46 1 12.0885 -1.9644 1.1010
47 1 14.7989 -2.0895 0.4280
48 1 12.1642 -0.3421 4.5674
49 1 12.2956 -1.9650 5.2927
50 1 9.9735 -0.9978 5.4489
51 1 10.0336 -2.5296 4.5432
52 1 4.0544 2.4660 2.3760
53 1 4.0724 0.9092 3.2399
54 1 1.8129 1.9716 3.2790
55 1 1.7985 0.4089 2.4267
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330793876.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:10:47
Heat of formation + Delta-G solvation = -114.083259 kcal
Electronic energy + Delta-G solvation = -30125.914533 eV
Core-core repulsion = 26161.149827 eV
Total energy + Delta-G solvation = -3964.764707 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.94 seconds
Orbital eigenvalues (eV)
-41.34956 -40.36560 -39.30639 -36.46694 -35.48429 -34.50996 -34.31646 -32.47075
-31.51933 -31.11348 -30.07891 -28.13764 -25.88835 -24.84664 -24.38534 -23.84775
-23.10229 -22.42754 -21.33307 -20.59618 -20.03372 -18.73183 -17.98964 -17.48955
-16.89099 -16.82853 -16.81598 -16.51941 -15.87862 -15.75137 -15.54380 -15.30701
-15.09176 -14.87509 -14.66700 -14.48333 -14.16236 -14.00668 -13.82848 -13.68427
-13.56535 -13.37998 -13.07354 -12.91666 -12.82562 -12.73403 -12.58150 -12.48401
-12.27386 -12.13721 -11.96078 -11.87722 -11.84264 -11.67416 -11.60794 -11.53742
-11.21087 -11.12944 -10.99138 -10.63621 -10.53395 -10.25260 -9.98988 -8.67446
-7.87704 -5.31843 1.45714 1.47322 1.55683 1.71913 2.29237 2.50824
2.98452 3.26258 3.68083 3.71432 3.75620 3.83312 3.85752 3.94015
3.97362 4.06565 4.08171 4.22269 4.31587 4.41678 4.42970 4.52647
4.53302 4.55489 4.64506 4.67229 4.70754 4.74286 4.78493 4.81385
4.89735 4.90276 4.93108 4.97117 5.04147 5.05503 5.11391 5.15079
5.18050 5.25046 5.27168 5.30147 5.36198 5.40545 5.41926 5.46804
5.51438 5.58249 5.66926 5.79903 6.35847 6.39763 6.62562 7.15992
7.32474 7.88197 8.38431 9.18213
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.024131 B = 0.001842 C = 0.001785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1160.044911 B =15195.976922 C =15682.584648
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.158 4.158
3 C 0.086 3.914
4 H 0.112 0.888
5 C -0.140 4.140
6 C -0.070 4.070
7 H 0.065 0.935
8 C -0.131 4.131
9 C 0.507 3.493
10 O -0.580 6.580
11 N -0.721 5.721
12 C 0.137 3.863
13 C -0.078 4.078
14 C -0.119 4.119
15 C 0.175 3.825
16 N -0.612 5.612
17 C -0.262 4.262
18 H 0.063 0.937
19 C -0.051 4.051
20 N -0.933 5.933
21 Si 0.964 3.036
22 H -0.286 1.286
23 H -0.294 1.294
24 H -0.270 1.270
25 C 0.141 3.859
26 C -0.116 4.116
27 C -0.150 4.150
28 C 0.059 3.941
29 O -0.391 6.391
30 H 0.061 0.939
31 H 0.047 0.953
32 H 0.055 0.945
33 H 0.059 0.941
34 H 0.082 0.918
35 H 0.090 0.910
36 H 0.078 0.922
37 H 0.115 0.885
38 H 0.113 0.887
39 H 0.412 0.588
40 H 0.065 0.935
41 H 0.051 0.949
42 H 0.076 0.924
43 H 0.043 0.957
44 H 0.072 0.928
45 H 0.000 1.000
46 H 0.051 0.949
47 H 0.250 0.750
48 H 0.017 0.983
49 H 0.051 0.949
50 H 0.082 0.918
51 H 0.053 0.947
52 H 0.066 0.934
53 H 0.070 0.930
54 H 0.095 0.905
55 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.784 9.085 -3.233 26.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.196 4.196
3 C 0.029 3.971
4 H 0.130 0.870
5 C -0.178 4.178
6 C -0.089 4.089
7 H 0.083 0.917
8 C -0.171 4.171
9 C 0.295 3.705
10 O -0.461 6.461
11 N -0.373 5.373
12 C 0.013 3.987
13 C -0.097 4.097
14 C -0.158 4.158
15 C 0.049 3.951
16 N -0.336 5.336
17 C -0.392 4.392
18 H 0.081 0.919
19 C -0.246 4.246
20 N -0.579 5.579
21 Si 0.792 3.208
22 H -0.213 1.213
23 H -0.221 1.221
24 H -0.195 1.195
25 C 0.015 3.985
26 C -0.155 4.155
27 C -0.188 4.188
28 C -0.017 4.017
29 O -0.310 6.310
30 H 0.080 0.920
31 H 0.066 0.934
32 H 0.074 0.926
33 H 0.077 0.923
34 H 0.101 0.899
35 H 0.109 0.891
36 H 0.097 0.903
37 H 0.133 0.867
38 H 0.131 0.869
39 H 0.248 0.752
40 H 0.083 0.917
41 H 0.069 0.931
42 H 0.095 0.905
43 H 0.061 0.939
44 H 0.091 0.909
45 H 0.018 0.982
46 H 0.069 0.931
47 H 0.059 0.941
48 H 0.035 0.965
49 H 0.069 0.931
50 H 0.101 0.899
51 H 0.071 0.929
52 H 0.085 0.915
53 H 0.089 0.911
54 H 0.113 0.887
55 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -25.287 8.856 -2.771 26.936
hybrid contribution 1.507 -0.986 -0.366 1.838
sum -23.780 7.870 -3.137 25.244
Atomic orbital electron populations
1.21686 0.95082 1.01612 1.02031 1.22198 0.97091 0.97328 1.02981
1.22363 0.94133 0.93369 0.87247 0.87034 1.22250 0.95363 1.01981
0.98170 1.20909 0.93063 0.99877 0.95091 0.91656 1.21792 0.96049
1.01955 0.97298 1.21269 0.81869 0.80598 0.86730 1.90641 1.60594
1.48533 1.46308 1.46088 1.06991 1.53153 1.31095 1.21232 0.92211
0.95453 0.89821 1.21153 0.92726 1.00129 0.95708 1.22033 0.96898
0.99577 0.97341 1.20617 0.89897 0.95186 0.89366 1.44346 1.44573
1.43215 1.01465 1.19507 1.09720 1.05680 1.04335 0.91902 1.25744
0.98895 1.00136 0.99842 1.70170 1.41168 1.30349 1.16225 0.85314
0.77497 0.79968 0.77973 1.21299 1.22097 1.19522 1.21051 0.93511
0.95987 0.87937 1.21858 0.95872 1.00287 0.97503 1.22269 0.96491
1.00916 0.99137 1.22555 0.93220 0.97786 0.88154 1.87941 1.75046
1.53699 1.14343 0.91953 0.93362 0.92574 0.92286 0.89949 0.89121
0.90344 0.86652 0.86873 0.75157 0.91671 0.93096 0.90528 0.93856
0.90914 0.98163 0.93104 0.94121 0.96523 0.93055 0.89916 0.92856
0.91480 0.91113 0.88717 0.93283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.88 9.81 71.98 0.71 -1.18 16
2 C -0.16 -2.12 4.74 30.60 0.15 -1.97 16
3 C 0.09 1.18 3.29 30.63 0.10 1.28 16
4 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16
5 C -0.14 -1.66 4.93 30.69 0.15 -1.51 16
6 C -0.07 -1.12 1.61 -10.67 -0.02 -1.13 16
7 H 0.07 1.27 6.55 -2.39 -0.02 1.25 16
8 C -0.13 -1.87 5.19 29.85 0.15 -1.72 16
9 C 0.51 11.22 7.57 87.66 0.66 11.88 16
10 O -0.58 -17.28 13.98 -2.99 -0.04 -17.32 16
11 N -0.72 -15.21 5.27 -463.06 -2.44 -17.65 16
12 C 0.14 3.46 5.06 86.38 0.44 3.89 16
13 C -0.08 -2.23 2.19 -10.77 -0.02 -2.26 16
14 C -0.12 -4.08 5.25 30.67 0.16 -3.92 16
15 C 0.17 8.07 5.31 86.36 0.46 8.53 16
16 N -0.61 -30.19 3.00 -699.08 -2.09 -32.28 16
17 C -0.26 -14.39 9.59 84.04 0.81 -13.58 16
18 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16
19 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16
20 N -0.93 -54.52 11.19 21.65 0.24 -54.27 16
21 Si 0.96 44.77 29.59 68.60 2.03 46.80 16
22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16
23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
25 C 0.14 5.63 6.52 86.36 0.56 6.19 16
26 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16
27 C -0.15 -2.75 5.12 30.68 0.16 -2.59 16
28 C 0.06 1.04 6.51 72.01 0.47 1.51 16
29 O -0.39 -7.14 10.13 -148.98 -1.51 -8.65 16
30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.05 0.72 7.82 -2.38 -0.02 0.70 16
32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
33 H 0.06 0.96 4.97 -2.39 -0.01 0.95 16
34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16
39 H 0.41 6.98 7.65 -92.71 -0.71 6.27 16
40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16
44 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16
45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
46 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16
47 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16
48 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16
49 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16
50 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
51 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16
52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
53 H 0.07 1.64 6.04 -2.38 -0.01 1.62 16
54 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
55 H 0.05 0.89 6.24 -2.39 -0.01 0.88 16
Total: -1.00 -67.93 410.56 1.84 -66.09
By element:
Atomic # 1 Polarization: 19.58 SS G_CDS: 0.14 Total: 19.72 kcal
Atomic # 6 Polarization: -7.94 SS G_CDS: 5.51 Total: -2.43 kcal
Atomic # 7 Polarization: -99.92 SS G_CDS: -4.29 Total: -104.21 kcal
Atomic # 8 Polarization: -24.42 SS G_CDS: -1.55 Total: -25.98 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -67.93 1.84 -66.09 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330793876.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.991 kcal
(2) G-P(sol) polarization free energy of solvation -67.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.95 seconds