Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 H 1.09005 * 109.47142 * 302.61956 * 3 2 1 5 5 C 1.50701 * 109.47321 * 182.62608 * 3 2 1 6 6 O 1.21284 * 120.00015 * 266.77747 * 5 3 2 7 7 N 1.34783 * 120.00062 * 86.76995 * 5 3 2 8 8 C 1.46499 * 119.99656 * 184.86232 * 7 5 3 9 9 C 1.50700 * 109.47180 * 90.00547 * 8 7 5 10 10 H 1.07997 * 119.99910 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99838 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99842 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47518 * 59.99286 * 13 11 9 15 15 H 1.48494 * 109.46934 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46898 * 299.99379 * 13 11 9 17 17 C 1.46496 * 119.99816 * 4.86404 * 7 5 3 18 18 C 1.53004 * 109.46918 * 94.42431 * 17 7 5 19 19 C 1.52997 * 117.49727 * 243.74316 * 18 17 7 20 20 C 1.53006 * 117.49543 * 175.08520 * 18 17 7 21 21 N 1.46896 * 109.47567 * 62.62227 * 3 2 1 22 22 C 1.47020 * 110.99771 * 50.87497 * 21 3 2 23 23 C 1.53094 * 109.25660 * 182.39350 * 22 21 3 24 24 O 1.43012 * 109.26156 * 303.14776 * 23 22 21 25 25 C 1.43014 * 113.73567 * 58.66968 * 24 23 22 26 26 H 1.09001 * 109.50568 * 61.27067 * 25 24 23 27 27 C 1.53005 * 109.50586 * 181.39693 * 25 24 23 28 28 C 1.52998 * 109.47117 * 294.78180 * 27 25 24 29 29 C 1.47015 * 111.00300 * 174.50637 * 21 3 2 30 30 H 1.09001 * 109.46815 * 174.97849 * 1 2 3 31 31 H 1.08992 * 109.47330 * 294.98002 * 1 2 3 32 32 H 1.08997 * 109.47066 * 54.98064 * 1 2 3 33 33 H 1.08997 * 109.47429 * 239.99743 * 2 1 3 34 34 H 1.08999 * 109.46989 * 119.99191 * 2 1 3 35 35 H 1.09005 * 109.46836 * 210.00069 * 8 7 5 36 36 H 1.09000 * 109.47404 * 330.00177 * 8 7 5 37 37 H 0.97002 * 119.99168 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.47037 * 214.42388 * 17 7 5 39 39 H 1.08997 * 109.47542 * 334.42583 * 17 7 5 40 40 H 1.08994 * 115.55174 * 29.41801 * 18 17 7 41 41 H 1.08994 * 117.49935 * 0.02562 * 19 18 17 42 42 H 1.08998 * 117.49781 * 145.02389 * 19 18 17 43 43 H 1.09003 * 117.49204 * 214.98141 * 20 18 17 44 44 H 1.08996 * 117.50189 * 359.97209 * 20 18 17 45 45 H 1.09004 * 109.50201 * 302.32633 * 22 21 3 46 46 H 1.08992 * 109.51055 * 62.45607 * 22 21 3 47 47 H 1.09007 * 109.50935 * 63.08202 * 23 22 21 48 48 H 1.09001 * 109.50711 * 183.20871 * 23 22 21 49 49 H 1.09004 * 109.47168 * 54.78466 * 27 25 24 50 50 H 1.09002 * 109.47029 * 174.78127 * 27 25 24 51 51 H 1.09002 * 109.46909 * 60.00513 * 28 27 25 52 52 H 1.08998 * 109.47378 * 179.97438 * 28 27 25 53 53 H 1.08995 * 109.47201 * 300.00047 * 28 27 25 54 54 H 1.09004 * 109.50400 * 297.54707 * 29 21 3 55 55 H 1.09003 * 109.50536 * 57.62977 * 29 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6387 1.9698 -0.8656 5 6 3.5455 1.4432 -0.0651 6 8 4.1967 1.4864 0.9572 7 7 4.1685 1.3955 -1.2594 8 6 5.6283 1.2885 -1.3203 9 6 6.0251 -0.1651 -1.3388 10 1 5.2659 -0.9326 -1.3078 11 6 7.3576 -0.5153 -1.3952 12 7 8.2820 0.4193 -1.4334 13 14 7.8494 -2.3172 -1.4189 14 1 7.2542 -2.9773 -2.6085 15 1 9.3291 -2.4256 -1.4805 16 1 7.3560 -2.9813 -0.1856 17 6 3.3857 1.4506 -2.4965 18 6 3.3120 2.8973 -2.9892 19 6 1.9328 3.5580 -3.0363 20 6 2.6316 3.1510 -4.3360 21 7 1.6027 2.1166 1.2298 22 6 1.9400 1.3175 2.4169 23 6 1.4150 2.0261 3.6683 24 8 1.9647 3.3449 3.7294 25 6 1.6552 4.1510 2.5893 26 1 0.5748 4.2735 2.5127 27 6 2.3164 5.5226 2.7387 28 6 1.6988 6.2596 3.9287 29 6 2.1826 3.4640 1.3269 30 1 -0.3633 -1.0237 -0.0900 31 1 -0.3633 0.4339 0.9315 32 1 -0.3633 0.5897 -0.8416 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.9908 1.7757 -2.2255 36 1 6.0649 1.7733 -0.4470 37 1 9.2194 0.1728 -1.4735 38 1 3.8630 0.8319 -3.2563 39 1 2.3786 1.0799 -2.3061 40 1 4.1629 3.5266 -2.7288 41 1 1.0782 2.9624 -2.7158 42 1 1.8766 4.6222 -2.8072 43 1 3.0349 3.9475 -4.9613 44 1 2.2370 2.2873 -4.8711 45 1 1.4794 0.3330 2.3358 46 1 3.0223 1.2090 2.4872 47 1 0.3275 2.0868 3.6230 48 1 1.7122 1.4664 4.5552 49 1 3.3858 5.3942 2.9061 50 1 2.1581 6.1032 1.8298 51 1 1.8572 5.6791 4.8376 52 1 2.1701 7.2366 4.0355 53 1 0.6294 6.3881 3.7613 54 1 3.2689 3.3898 1.3797 55 1 1.8998 4.0460 0.4497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339269827.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = -73.117007 kcal Electronic energy + Delta-G solvation = -32559.399000 eV Core-core repulsion = 28596.410723 eV Total energy + Delta-G solvation = -3962.988277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.88023 -40.05926 -38.46826 -37.27972 -36.11330 -34.91843 -34.69135 -33.64792 -31.01979 -30.18864 -28.97738 -27.65623 -26.48202 -25.24145 -24.52491 -23.22767 -23.08930 -22.08104 -21.69866 -21.38818 -19.86457 -18.63240 -18.33542 -17.78532 -17.47835 -17.02257 -16.54156 -16.20094 -16.09149 -15.94575 -15.75251 -15.28615 -15.26300 -14.90068 -14.57431 -14.48866 -14.24224 -14.12401 -13.93069 -13.78817 -13.43117 -13.08954 -13.03234 -12.92846 -12.83034 -12.60535 -12.59182 -12.53376 -12.30188 -12.25894 -12.20450 -12.04443 -11.92555 -11.81929 -11.76745 -11.60771 -11.28649 -11.27339 -11.13439 -10.79757 -10.68556 -10.51537 -9.50358 -9.15632 -8.26451 -6.42040 1.32435 1.36788 1.44109 1.72039 2.23206 2.39432 2.69412 2.87707 2.93872 3.03001 3.57886 3.72777 3.85052 3.88002 3.99468 4.01629 4.04567 4.11009 4.13885 4.17750 4.29339 4.35065 4.39746 4.47929 4.48112 4.56003 4.57421 4.63992 4.72314 4.75388 4.78209 4.83472 4.86188 4.95457 4.97077 5.01196 5.05836 5.08736 5.12924 5.16559 5.18450 5.23401 5.28311 5.29210 5.31729 5.43296 5.51534 5.53045 5.77352 5.82888 5.87225 6.01704 6.29292 6.64976 6.75488 7.23905 7.43817 8.80599 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.004027 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.650910 B = 6950.641743 C = 7675.068835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.125 0.875 5 C 0.476 3.524 6 O -0.588 6.588 7 N -0.596 5.596 8 C 0.266 3.734 9 C -0.542 4.542 10 H 0.054 0.946 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.140 3.860 18 C -0.198 4.198 19 C -0.162 4.162 20 C -0.158 4.158 21 N -0.485 5.485 22 C -0.008 4.008 23 C 0.071 3.929 24 O -0.402 6.402 25 C 0.103 3.897 26 H 0.083 0.917 27 C -0.118 4.118 28 C -0.140 4.140 29 C 0.013 3.987 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.015 0.985 36 H -0.010 1.010 37 H 0.267 0.733 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.044 0.956 50 H 0.093 0.907 51 H 0.047 0.953 52 H 0.063 0.937 53 H 0.068 0.932 54 H 0.017 0.983 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.079 6.375 0.455 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C -0.037 4.037 4 H 0.142 0.858 5 C 0.264 3.736 6 O -0.469 6.469 7 N -0.326 5.326 8 C 0.145 3.855 9 C -0.581 4.581 10 H 0.073 0.927 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.182 1.182 15 H -0.204 1.204 16 H -0.203 1.203 17 C 0.017 3.983 18 C -0.217 4.217 19 C -0.199 4.199 20 C -0.195 4.195 21 N -0.208 5.208 22 C -0.136 4.136 23 C -0.005 4.005 24 O -0.321 6.321 25 C 0.045 3.955 26 H 0.101 0.899 27 C -0.156 4.156 28 C -0.197 4.197 29 C -0.116 4.116 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.129 0.871 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.063 0.937 50 H 0.111 0.889 51 H 0.066 0.934 52 H 0.082 0.918 53 H 0.087 0.913 54 H 0.035 0.965 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.950 6.544 1.093 22.931 hybrid contribution 2.493 -1.010 -0.176 2.696 sum -19.457 5.534 0.917 20.249 Atomic orbital electron populations 1.21589 0.91324 1.02277 1.03326 1.21620 0.99386 0.92076 1.02360 1.22122 0.87021 0.98726 0.95835 0.85768 1.22538 0.92705 0.75506 0.82892 1.90589 1.69113 1.52209 1.35038 1.48291 1.07897 1.70048 1.06334 1.18609 0.76363 0.95702 0.94873 1.21645 0.92412 0.92731 1.51275 0.92732 1.25880 0.96272 1.02586 0.94356 1.70064 1.01077 1.34903 1.50803 0.85474 0.77294 0.79066 0.79043 1.18190 1.20376 1.20304 1.21271 0.96354 0.95005 0.85659 1.22636 0.97667 0.97185 1.04216 1.23176 0.94017 1.01605 1.01107 1.23026 1.02639 1.03944 0.89940 1.62867 1.54886 1.01996 1.01040 1.23156 1.00809 0.98454 0.91196 1.22705 0.98358 0.82547 0.96938 1.87948 1.77047 1.24982 1.42128 1.22220 0.99372 0.90424 0.83475 0.89891 1.21569 0.99551 0.93523 1.00951 1.21635 1.01188 0.99702 0.97176 1.22940 0.97373 0.90848 1.00409 0.91665 0.91662 0.91170 0.91272 0.92724 0.96696 0.99206 0.92442 0.90998 0.88034 0.90695 0.86891 0.88239 0.88231 0.87096 0.88466 0.94235 0.90579 0.87977 0.93731 0.88884 0.93390 0.91773 0.91345 0.96454 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.62 71.98 0.69 -1.54 16 2 C -0.12 -2.98 4.70 30.59 0.14 -2.84 16 3 C 0.08 2.20 1.53 44.17 0.07 2.27 16 4 H 0.12 3.05 5.19 -2.38 -0.01 3.04 16 5 C 0.48 20.04 5.86 87.66 0.51 20.55 16 6 O -0.59 -30.85 11.87 -3.04 -0.04 -30.89 16 7 N -0.60 -25.77 2.46 -826.15 -2.03 -27.80 16 8 C 0.27 14.83 5.22 85.63 0.45 15.28 16 9 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 10 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 11 C 0.01 0.47 5.46 84.66 0.46 0.94 16 12 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 13 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.14 4.46 5.36 86.38 0.46 4.92 16 18 C -0.20 -5.44 5.99 -10.79 -0.06 -5.50 16 19 C -0.16 -3.07 9.60 30.62 0.29 -2.77 16 20 C -0.16 -3.11 10.26 30.62 0.31 -2.80 16 21 N -0.49 -13.65 4.24 -874.36 -3.71 -17.36 16 22 C -0.01 -0.25 4.71 86.31 0.41 0.16 16 23 C 0.07 1.81 7.01 72.01 0.50 2.32 16 24 O -0.40 -12.03 10.02 -148.98 -1.49 -13.52 16 25 C 0.10 2.63 2.80 30.63 0.09 2.72 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 C -0.12 -2.72 5.64 30.60 0.17 -2.55 16 28 C -0.14 -2.64 9.81 71.98 0.71 -1.94 16 29 C 0.01 0.38 4.47 86.31 0.39 0.77 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.15 7.50 -2.39 -0.02 1.13 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.81 7.55 -2.39 -0.02 1.80 16 34 H 0.05 1.60 6.10 -2.39 -0.01 1.59 16 35 H 0.02 0.86 8.07 -2.38 -0.02 0.84 16 36 H -0.01 -0.66 7.36 -2.39 -0.02 -0.68 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 39 H 0.10 2.54 5.11 -2.39 -0.01 2.52 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.11 1.71 7.37 -2.39 -0.02 1.70 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.10 2.60 5.67 -2.38 -0.01 2.59 16 46 H 0.04 1.64 5.46 -2.39 -0.01 1.63 16 47 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 48 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.05 1.04 7.83 -2.39 -0.02 1.02 16 52 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 54 H 0.02 0.70 6.00 -2.39 -0.01 0.68 16 55 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.32 417.57 1.73 -74.59 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.85 Total: 26.26 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.83 Total: -1.54 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.45 Total: -102.36 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.53 Total: -44.41 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.32 1.73 -74.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339269827.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.474 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds