Wall clock time and date at job start Tue Mar 31 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47086 * 64.99376 * 3 2 1 5 5 C 1.53001 * 109.46499 * 185.10816 * 4 3 2 6 6 C 1.53000 * 109.47061 * 184.99674 * 3 2 1 7 7 N 1.46500 * 109.47174 * 63.14581 * 6 3 2 8 8 C 1.46494 * 120.00320 * 262.09510 * 7 6 3 9 9 C 1.50700 * 109.47096 * 273.98949 * 8 7 6 10 10 H 1.07998 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99971 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99949 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47105 * 60.00342 * 13 11 9 15 15 H 1.48496 * 109.46682 * 180.02562 * 13 11 9 16 16 H 1.48489 * 109.46961 * 300.00149 * 13 11 9 17 17 C 1.34783 * 119.99536 * 82.09139 * 7 6 3 18 18 O 1.21278 * 120.00314 * 4.73902 * 17 7 6 19 19 C 1.50699 * 119.99812 * 184.73134 * 17 7 6 20 20 H 1.09007 * 109.70047 * 307.41438 * 19 17 7 21 21 C 1.53069 * 109.67563 * 67.92736 * 19 17 7 22 22 C 1.50173 * 109.89689 * 168.61483 * 21 19 17 23 23 O 1.21287 * 118.24103 * 162.46050 * 22 21 19 24 24 N 1.33350 * 123.51190 * 342.45962 * 22 21 19 25 25 C 1.45752 * 124.10428 * 2.18015 * 24 22 21 26 26 H 1.09003 * 109.30588 * 101.25935 * 25 24 22 27 27 C 1.53000 * 109.13353 * 220.73699 * 25 24 22 28 28 C 1.53001 * 109.47308 * 295.93608 * 27 25 24 29 29 C 1.52916 * 110.49117 * 340.94369 * 25 24 22 30 30 H 1.09006 * 109.47097 * 60.00518 * 1 2 3 31 31 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47397 * 300.00631 * 1 2 3 33 33 H 1.08993 * 109.47153 * 239.99438 * 2 1 3 34 34 H 1.09006 * 109.46694 * 119.99123 * 2 1 3 35 35 H 1.08996 * 109.46499 * 304.99820 * 3 2 1 36 36 H 1.08999 * 109.47320 * 305.10756 * 4 3 2 37 37 H 1.08995 * 109.46860 * 65.11179 * 4 3 2 38 38 H 1.08997 * 109.47334 * 302.27185 * 5 4 3 39 39 H 1.08994 * 109.47366 * 62.28381 * 5 4 3 40 40 H 1.09005 * 109.46536 * 182.28096 * 5 4 3 41 41 H 1.08998 * 109.47008 * 303.15020 * 6 3 2 42 42 H 1.08999 * 109.46722 * 183.14757 * 6 3 2 43 43 H 1.09006 * 109.47074 * 33.99199 * 8 7 6 44 44 H 1.09007 * 109.47467 * 153.98935 * 8 7 6 45 45 H 0.97002 * 120.00084 * 179.97438 * 12 11 9 46 46 H 1.08998 * 109.40040 * 288.76545 * 21 19 17 47 47 H 1.09001 * 109.39590 * 48.50488 * 21 19 17 48 48 H 0.96998 * 117.94796 * 182.19465 * 24 22 21 49 49 H 1.09000 * 109.46862 * 55.93235 * 27 25 24 50 50 H 1.08997 * 109.47376 * 175.92989 * 27 25 24 51 51 H 1.09000 * 109.46854 * 299.99632 * 28 27 25 52 52 H 1.08995 * 109.46937 * 59.99637 * 28 27 25 53 53 H 1.08998 * 109.47204 * 179.97438 * 28 27 25 54 54 H 1.09001 * 109.60323 * 291.00299 * 29 25 24 55 55 H 1.08997 * 109.74141 * 170.59188 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0329 3.6031 1.2546 6 6 3.5649 1.4443 -0.1256 7 7 3.9496 0.8570 -1.4114 8 6 4.3555 -0.5488 -1.4825 9 6 5.8271 -0.6627 -1.1787 10 1 6.4025 0.2234 -0.9547 11 6 6.4389 -1.8983 -1.1858 12 7 5.7382 -2.9774 -1.4581 13 14 8.2630 -2.0396 -0.8086 14 1 8.5284 -1.5157 0.5554 15 1 8.6743 -3.4646 -0.8808 16 1 9.0361 -1.2508 -1.8010 17 6 3.9301 1.6102 -2.5290 18 8 3.6776 2.7943 -2.4580 19 6 4.2222 0.9809 -3.8668 20 1 5.1664 0.4383 -3.8194 21 6 3.0927 0.0180 -4.2411 22 6 3.2307 -0.3980 -5.6774 23 8 2.6329 -1.3859 -6.0488 24 7 3.9752 0.2605 -6.5664 25 6 4.7806 1.4331 -6.2491 26 1 5.8245 1.1364 -6.1472 27 6 4.6530 2.4512 -7.3840 28 6 5.2414 1.8611 -8.6672 29 6 4.3065 2.0706 -4.9425 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6054 1.9814 -0.8418 36 1 0.5564 2.0455 1.4409 37 1 2.1421 1.6433 2.1424 38 1 3.1058 3.6844 1.0806 39 1 1.4950 4.0956 0.4446 40 1 1.7812 4.0811 2.2013 41 1 3.9969 0.8581 0.6853 42 1 3.9328 2.4688 -0.0695 43 1 3.7881 -1.1280 -0.7539 44 1 4.1603 -0.9332 -2.4837 45 1 6.1686 -3.8467 -1.4635 46 1 3.1420 -0.8637 -3.6021 47 1 2.1324 0.5136 -4.0986 48 1 3.9810 -0.0609 -7.4816 49 1 3.6010 2.6886 -7.5425 50 1 5.1946 3.3595 -7.1200 51 1 6.2934 1.6237 -8.5087 52 1 4.6997 0.9529 -8.9311 53 1 5.1501 2.5863 -9.4758 54 1 3.3228 2.5166 -5.0891 55 1 5.0135 2.8390 -4.6300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348854342.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:43 Heat of formation + Delta-G solvation = -125.267727 kcal Electronic energy + Delta-G solvation = -32143.387420 eV Core-core repulsion = 28178.137718 eV Total energy + Delta-G solvation = -3965.249702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.92225 -40.59980 -38.48964 -37.86573 -36.32523 -34.78881 -34.35055 -33.01619 -32.62850 -30.22380 -29.74964 -28.61068 -26.59273 -25.44265 -24.84663 -23.71134 -23.35505 -22.57940 -20.92291 -20.35500 -19.69957 -18.62625 -18.33538 -17.98665 -17.24522 -17.23971 -16.48815 -16.20370 -15.97092 -15.57495 -15.49725 -15.28351 -14.96401 -14.80054 -14.69227 -14.46283 -14.30035 -14.23709 -14.07798 -13.75864 -13.63943 -13.19540 -12.96460 -12.89969 -12.83112 -12.65061 -12.62893 -12.33277 -12.30986 -12.19493 -12.11766 -12.10574 -11.96484 -11.83369 -11.76235 -11.65609 -11.43404 -11.29408 -11.25922 -11.17446 -10.63070 -10.36005 -10.11171 -9.35237 -8.18587 -6.33265 1.41181 1.42248 1.49676 1.52610 1.74469 2.25987 2.29513 2.44829 3.11238 3.40481 3.56613 3.65446 3.76321 3.85125 3.97768 4.06165 4.07393 4.10847 4.22045 4.31083 4.40030 4.48688 4.49251 4.55366 4.59438 4.62725 4.64414 4.74149 4.78066 4.81892 4.89733 4.95042 4.95586 4.99066 5.03355 5.11648 5.15305 5.16232 5.18472 5.27084 5.28198 5.29335 5.34916 5.44114 5.44824 5.50790 5.56159 5.68468 5.82747 5.90593 6.08742 6.26556 6.61250 6.83895 7.14754 7.31209 7.42872 8.85643 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007220 B = 0.004948 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.422930 B = 5657.253663 C = 7636.116951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.111 4.111 5 C -0.149 4.149 6 C 0.122 3.878 7 N -0.590 5.590 8 C 0.242 3.758 9 C -0.547 4.547 10 H 0.052 0.948 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.951 3.049 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.102 4.102 20 H 0.095 0.905 21 C -0.122 4.122 22 C 0.529 3.471 23 O -0.601 6.601 24 N -0.700 5.700 25 C 0.139 3.861 26 H 0.085 0.915 27 C -0.126 4.126 28 C -0.156 4.156 29 C -0.100 4.100 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.023 0.977 44 H 0.042 0.958 45 H 0.266 0.734 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.404 0.596 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.061 0.939 52 H 0.050 0.950 53 H 0.071 0.929 54 H 0.078 0.922 55 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 11.431 -5.027 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.206 4.206 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.121 3.879 9 C -0.586 4.586 10 H 0.071 0.929 11 C -0.177 4.177 12 N -0.557 5.557 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.195 1.195 17 C 0.309 3.691 18 O -0.463 6.463 19 C -0.124 4.124 20 H 0.114 0.886 21 C -0.162 4.162 22 C 0.317 3.683 23 O -0.484 6.484 24 N -0.353 5.353 25 C 0.034 3.966 26 H 0.103 0.897 27 C -0.164 4.164 28 C -0.213 4.213 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.242 0.758 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.080 0.920 52 H 0.069 0.931 53 H 0.090 0.910 54 H 0.097 0.903 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.894 11.416 -4.939 13.367 hybrid contribution 1.167 -0.887 0.079 1.468 sum -3.727 10.529 -4.861 12.181 Atomic orbital electron populations 1.21763 0.94555 1.01703 1.02085 1.21575 0.96822 0.96034 1.01312 1.21458 0.94385 0.96166 0.98882 1.21528 1.01934 0.95540 0.95878 1.21779 1.01047 0.96019 1.01798 1.21504 0.95116 0.98376 0.85069 1.48149 1.63604 1.12949 1.07212 1.19402 0.93916 0.76407 0.98135 1.21677 0.95301 0.92958 1.48641 0.92925 1.25606 1.02032 0.95316 0.94778 1.70009 1.37783 0.98875 1.49033 0.85714 0.80614 0.77031 0.79001 1.19725 1.21015 1.19526 1.20490 0.76291 0.86058 0.86299 1.90575 1.52121 1.16067 1.87586 1.21303 1.00273 0.97722 0.93077 0.88636 1.21675 1.00278 1.01204 0.93060 1.20059 0.77790 0.82065 0.88436 1.90718 1.48894 1.28335 1.80405 1.45600 1.46551 1.30454 1.12645 1.21253 0.94886 0.85157 0.95255 0.89714 1.21867 1.02789 0.98081 0.93707 1.21818 1.01197 1.01169 0.97112 1.21706 1.03979 0.96560 0.91574 0.93231 0.92725 0.91111 0.93788 0.92461 0.92489 0.90267 0.91604 0.93640 0.93343 0.91325 0.91283 0.91420 0.95857 0.94034 0.92465 0.88480 0.87669 0.75843 0.91050 0.88699 0.92016 0.93066 0.91033 0.90296 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.67 71.98 0.70 -2.87 16 2 C -0.12 -3.66 4.76 30.60 0.15 -3.52 16 3 C -0.09 -2.69 2.00 -10.79 -0.02 -2.71 16 4 C -0.11 -2.65 5.27 30.60 0.16 -2.49 16 5 C -0.15 -3.45 9.72 71.98 0.70 -2.75 16 6 C 0.12 4.35 4.66 86.38 0.40 4.76 16 7 N -0.59 -23.53 2.10 -826.15 -1.74 -25.26 16 8 C 0.24 11.15 3.89 85.63 0.33 11.48 16 9 C -0.55 -27.84 9.39 25.60 0.24 -27.60 16 10 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 11 C 0.02 1.21 5.46 84.65 0.46 1.67 16 12 N -0.92 -50.67 13.29 21.45 0.28 -50.38 16 13 Si 0.95 41.47 29.54 68.60 2.03 43.50 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 C 0.52 19.90 6.87 87.66 0.60 20.50 16 18 O -0.58 -23.41 15.67 -3.02 -0.05 -23.46 16 19 C -0.10 -3.44 1.74 -11.40 -0.02 -3.46 16 20 H 0.10 3.59 7.66 -2.38 -0.02 3.57 16 21 C -0.12 -4.21 5.00 29.71 0.15 -4.06 16 22 C 0.53 18.12 7.71 87.71 0.68 18.80 16 23 O -0.60 -25.27 17.78 -3.05 -0.05 -25.32 16 24 N -0.70 -18.13 5.12 -446.65 -2.28 -20.41 16 25 C 0.14 2.95 3.09 45.10 0.14 3.09 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 C -0.13 -1.91 5.57 30.59 0.17 -1.74 16 28 C -0.16 -2.03 9.75 71.98 0.70 -1.33 16 29 C -0.10 -2.59 3.94 30.68 0.12 -2.47 16 30 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.48 6.46 -2.39 -0.02 1.46 16 33 H 0.04 1.58 6.03 -2.39 -0.01 1.57 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.65 6.34 -2.39 -0.02 1.63 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 1.16 6.40 -2.39 -0.02 1.15 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 2.55 8.01 -2.39 -0.02 2.53 16 42 H 0.07 2.45 5.84 -2.39 -0.01 2.43 16 43 H 0.02 1.15 6.68 -2.38 -0.02 1.14 16 44 H 0.04 2.00 3.92 -2.38 -0.01 1.99 16 45 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.10 3.88 5.54 -2.39 -0.01 3.87 16 47 H 0.11 3.38 8.09 -2.39 -0.02 3.36 16 48 H 0.40 9.28 6.97 -92.71 -0.65 8.63 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.05 0.70 6.62 -2.39 -0.02 0.68 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 55 H 0.09 2.40 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -63.39 417.80 4.07 -59.32 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.22 Total: 36.73 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.66 Total: 5.29 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.74 Total: -96.06 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.10 Total: -48.78 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -63.39 4.07 -59.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348854342.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.951 kcal (2) G-P(sol) polarization free energy of solvation -63.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds