Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47188 * 2 1 4 4 C 1.52995 * 109.47059 * 173.48932 * 3 2 1 5 5 C 1.53002 * 109.47337 * 190.05005 * 4 3 2 6 6 C 1.52999 * 109.47309 * 293.49401 * 3 2 1 7 7 N 1.46497 * 109.47052 * 173.48017 * 6 3 2 8 8 C 1.46503 * 120.00145 * 297.97408 * 7 6 3 9 9 C 1.50701 * 109.47118 * 274.31794 * 8 7 6 10 10 H 1.08002 * 120.00037 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99780 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00098 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99813 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47498 * 89.99560 * 13 11 9 15 15 H 1.48501 * 109.47077 * 209.99942 * 13 11 9 16 16 H 1.48501 * 109.46968 * 329.99579 * 13 11 9 17 17 C 1.34776 * 120.00140 * 117.97496 * 7 6 3 18 18 O 1.21284 * 119.99997 * 185.10300 * 17 7 6 19 19 C 1.50702 * 119.99993 * 5.10946 * 17 7 6 20 20 H 1.09007 * 109.67030 * 18.95598 * 19 17 7 21 21 C 1.53065 * 109.67704 * 139.49333 * 19 17 7 22 22 C 1.50191 * 109.83449 * 70.62075 * 21 19 17 23 23 O 1.21286 * 118.25843 * 197.79789 * 22 21 19 24 24 N 1.33352 * 123.49437 * 18.07149 * 22 21 19 25 25 C 1.45753 * 124.10230 * 357.21526 * 24 22 21 26 26 H 1.09004 * 109.29951 * 259.04108 * 25 24 22 27 27 C 1.53010 * 109.29754 * 139.67019 * 25 24 22 28 28 C 1.52999 * 109.47111 * 65.00135 * 27 25 24 29 29 C 1.52914 * 110.49151 * 19.36080 * 25 24 22 30 30 H 1.08996 * 109.46990 * 306.34384 * 1 2 3 31 31 H 1.08995 * 109.47012 * 66.34546 * 1 2 3 32 32 H 1.09003 * 109.47073 * 186.34694 * 1 2 3 33 33 H 1.09005 * 109.46994 * 239.99971 * 2 1 3 34 34 H 1.09005 * 109.46760 * 120.00249 * 2 1 3 35 35 H 1.09000 * 109.47063 * 53.49262 * 3 2 1 36 36 H 1.09000 * 109.47521 * 310.05408 * 4 3 2 37 37 H 1.09001 * 109.47084 * 70.05745 * 4 3 2 38 38 H 1.08996 * 109.47234 * 170.40606 * 5 4 3 39 39 H 1.09003 * 109.47448 * 290.41174 * 5 4 3 40 40 H 1.09005 * 109.47161 * 50.41103 * 5 4 3 41 41 H 1.08999 * 109.46954 * 53.47671 * 6 3 2 42 42 H 1.09002 * 109.46970 * 293.47721 * 6 3 2 43 43 H 1.09000 * 109.47154 * 34.31155 * 8 7 6 44 44 H 1.09001 * 109.47290 * 154.31449 * 8 7 6 45 45 H 0.97004 * 119.99624 * 180.02562 * 12 11 9 46 46 H 1.09000 * 109.40571 * 190.96434 * 21 19 17 47 47 H 1.09005 * 109.39747 * 310.70496 * 21 19 17 48 48 H 0.97001 * 117.94791 * 177.50417 * 24 22 21 49 49 H 1.09004 * 109.46707 * 184.99680 * 27 25 24 50 50 H 1.08999 * 109.46983 * 304.99776 * 27 25 24 51 51 H 1.08999 * 109.47490 * 59.99951 * 28 27 25 52 52 H 1.08999 * 109.47366 * 180.02562 * 28 27 25 53 53 H 1.09003 * 109.47184 * 299.99894 * 28 27 25 54 54 H 1.08996 * 109.60714 * 68.99378 * 29 25 24 55 55 H 1.08996 * 109.60822 * 189.49098 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5612 1.4455 0.1636 5 6 4.0444 2.8754 0.4145 6 6 1.6679 2.1150 -1.3229 7 7 2.0167 3.5366 -1.2630 8 6 1.3763 4.4070 -0.2738 9 6 0.0681 4.9145 -0.8234 10 1 -0.2539 4.6187 -1.8110 11 6 -0.7172 5.7574 -0.0659 12 7 -0.3249 6.1180 1.1364 13 14 -2.3385 6.3871 -0.7474 14 1 -3.4281 5.4472 -0.3808 15 1 -2.6281 7.7273 -0.1771 16 1 -2.2482 6.4875 -2.2263 17 6 2.9268 4.0437 -2.1180 18 8 3.2842 5.1976 -2.0091 19 6 3.5004 3.1771 -3.2094 20 1 2.8510 2.3173 -3.3746 21 6 3.6213 3.9883 -4.5017 22 6 4.7158 5.0074 -4.3632 23 8 4.7364 5.9373 -5.1416 24 7 5.6692 4.9415 -3.4332 25 6 5.7369 3.9120 -2.4037 26 1 5.3580 4.3160 -1.4648 27 6 7.1930 3.4822 -2.2133 28 6 8.0046 4.6583 -1.6665 29 6 4.8998 2.6972 -2.8057 30 1 -0.3633 0.6090 0.8277 31 1 -0.3633 0.4123 -0.9413 32 1 -0.3633 -1.0214 0.1136 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5847 1.9888 0.8260 36 1 3.8371 0.8152 1.0089 37 1 4.0250 1.0595 -0.7442 38 1 5.0964 2.8588 0.6989 39 1 3.9229 3.4648 -0.4943 40 1 3.4579 3.3214 1.2179 41 1 0.5966 2.0106 -1.4948 42 1 2.2146 1.6408 -2.1380 43 1 1.1919 3.8434 0.6408 44 1 2.0304 5.2510 -0.0549 45 1 -0.8777 6.7107 1.6694 46 1 3.8488 3.3177 -5.3304 47 1 2.6781 4.4982 -4.6987 48 1 6.3587 5.6238 -3.4399 49 1 7.2374 2.6514 -1.5090 50 1 7.6075 3.1689 -3.1715 51 1 7.5900 4.9716 -0.7083 52 1 9.0419 4.3522 -1.5313 53 1 7.9601 5.4891 -2.3707 54 1 5.3703 2.1916 -3.6490 55 1 4.8219 2.0113 -1.9622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348854344.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = -110.435596 kcal Electronic energy + Delta-G solvation = -33300.421323 eV Core-core repulsion = 29335.814791 eV Total energy + Delta-G solvation = -3964.606532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -42.26308 -40.40423 -38.36301 -37.83195 -35.70111 -34.93241 -34.31307 -33.05198 -32.73579 -30.00696 -29.92266 -28.54528 -26.53083 -25.64356 -24.96545 -23.62068 -22.76764 -22.43504 -21.45337 -20.63355 -19.37212 -18.58922 -18.23634 -17.77826 -17.33530 -16.94733 -16.91033 -16.15633 -16.10804 -15.68075 -15.32006 -14.98604 -14.82427 -14.62416 -14.52641 -14.42042 -14.25103 -14.06060 -13.77026 -13.56247 -13.43698 -13.28380 -13.18754 -13.08816 -12.84534 -12.81764 -12.58593 -12.44441 -12.31810 -12.30712 -12.20033 -11.97635 -11.91792 -11.81703 -11.69887 -11.53840 -11.38482 -11.28197 -11.15780 -10.74632 -10.62894 -10.32256 -9.93668 -9.16603 -8.21939 -6.36572 1.32283 1.35598 1.44939 1.70535 1.87257 2.29166 2.41789 2.50809 3.07065 3.50282 3.54117 3.65631 3.79905 3.85560 3.93574 4.00580 4.20103 4.24952 4.27596 4.29327 4.46519 4.53566 4.59203 4.59475 4.62982 4.68889 4.72545 4.75424 4.78313 4.82059 4.90436 4.95583 5.02547 5.07205 5.11764 5.14176 5.19093 5.25071 5.26105 5.28197 5.30725 5.35411 5.36086 5.42083 5.57080 5.59819 5.60929 5.72090 5.89361 5.90904 6.09587 6.48703 6.73420 6.88291 7.29439 7.30038 7.55363 8.83541 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.004952 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.528449 B = 5653.252957 C = 7154.971261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C -0.106 4.106 4 C -0.104 4.104 5 C -0.170 4.170 6 C 0.104 3.896 7 N -0.590 5.590 8 C 0.274 3.726 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.262 1.262 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.504 3.496 18 O -0.588 6.588 19 C -0.113 4.113 20 H 0.140 0.860 21 C -0.116 4.116 22 C 0.527 3.473 23 O -0.624 6.624 24 N -0.694 5.694 25 C 0.129 3.871 26 H 0.052 0.948 27 C -0.124 4.124 28 C -0.159 4.159 29 C -0.119 4.119 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.060 0.940 42 H 0.117 0.883 43 H 0.018 0.982 44 H -0.007 1.007 45 H 0.265 0.735 46 H 0.150 0.850 47 H 0.076 0.924 48 H 0.392 0.608 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.043 0.957 52 H 0.076 0.924 53 H 0.043 0.957 54 H 0.123 0.877 55 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -19.869 -5.582 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.125 4.125 4 C -0.141 4.141 5 C -0.228 4.228 6 C -0.018 4.018 7 N -0.319 5.319 8 C 0.153 3.847 9 C -0.579 4.579 10 H 0.071 0.929 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.293 3.707 18 O -0.468 6.468 19 C -0.134 4.134 20 H 0.158 0.842 21 C -0.156 4.156 22 C 0.316 3.684 23 O -0.509 6.509 24 N -0.343 5.343 25 C 0.024 3.976 26 H 0.070 0.930 27 C -0.162 4.162 28 C -0.216 4.216 29 C -0.157 4.157 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.036 0.964 44 H 0.011 0.989 45 H 0.073 0.927 46 H 0.168 0.832 47 H 0.095 0.905 48 H 0.227 0.773 49 H 0.118 0.882 50 H 0.104 0.896 51 H 0.062 0.938 52 H 0.095 0.905 53 H 0.062 0.938 54 H 0.141 0.859 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.957 -18.896 -5.713 23.613 hybrid contribution -1.205 2.000 0.571 2.403 sum 11.753 -16.896 -5.143 21.214 Atomic orbital electron populations 1.21848 0.96818 1.01566 1.01256 1.21456 0.95036 0.93996 1.03618 1.21599 0.96871 0.96946 0.97080 1.21575 0.93857 0.95538 1.03102 1.22291 0.99972 0.98674 1.01814 1.22031 1.01283 0.79346 0.99145 1.48155 1.39451 1.10240 1.34097 1.18498 0.90560 0.88501 0.87170 1.21777 1.05365 1.29029 1.01767 0.92928 1.25779 1.01856 0.96196 0.95131 1.70054 1.39536 1.35978 1.11214 0.85541 0.79785 0.77892 0.78389 1.18720 1.21029 1.19878 1.20967 0.78979 0.87838 0.82890 1.90712 1.61679 1.20726 1.73723 1.21702 1.00429 0.99235 0.92023 0.84209 1.21568 0.97103 0.97438 0.99491 1.20371 0.82527 0.86282 0.79227 1.90676 1.77060 1.37002 1.46136 1.45414 1.27933 1.30710 1.30244 1.21275 0.97869 0.88177 0.90232 0.92964 1.21891 0.91681 0.99218 1.03392 1.21823 1.01062 0.98337 1.00419 1.22144 0.91079 0.96864 1.05587 0.95121 0.92867 0.91325 0.89040 0.90977 0.94191 0.90883 0.88950 0.92356 0.91799 0.96598 0.92185 0.86526 0.96407 0.98906 0.92653 0.83224 0.90511 0.77299 0.88161 0.89594 0.93787 0.90477 0.93780 0.85917 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.55 71.98 0.69 -2.61 16 2 C -0.10 -1.80 5.38 30.59 0.16 -1.64 16 3 C -0.11 -2.60 1.94 -10.80 -0.02 -2.62 16 4 C -0.10 -2.09 5.21 30.59 0.16 -1.93 16 5 C -0.17 -4.86 7.78 71.98 0.56 -4.30 16 6 C 0.10 2.84 5.00 86.38 0.43 3.27 16 7 N -0.59 -22.67 1.22 -826.15 -1.01 -23.68 16 8 C 0.27 14.36 4.13 85.63 0.35 14.71 16 9 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.54 5.46 84.66 0.46 1.00 16 12 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 13 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 16 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 17 C 0.50 18.75 3.72 87.66 0.33 19.08 16 18 O -0.59 -28.54 12.93 -3.04 -0.04 -28.58 16 19 C -0.11 -2.65 2.51 -11.40 -0.03 -2.68 16 20 H 0.14 2.25 5.65 -2.38 -0.01 2.24 16 21 C -0.12 -3.11 5.39 29.71 0.16 -2.95 16 22 C 0.53 18.13 6.45 87.72 0.57 18.70 16 23 O -0.62 -27.34 17.79 -3.05 -0.05 -27.39 16 24 N -0.69 -20.07 4.72 -446.61 -2.11 -22.18 16 25 C 0.13 2.89 2.19 45.11 0.10 2.99 16 26 H 0.05 1.59 5.33 -2.39 -0.01 1.57 16 27 C -0.12 -1.81 5.57 30.60 0.17 -1.64 16 28 C -0.16 -2.69 9.76 71.98 0.70 -1.98 16 29 C -0.12 -1.95 4.46 30.68 0.14 -1.81 16 30 H 0.03 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.05 1.15 6.78 -2.39 -0.02 1.14 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 35 H 0.04 1.36 6.39 -2.39 -0.02 1.34 16 36 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 37 H 0.09 1.22 5.86 -2.39 -0.01 1.21 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 2.04 1.49 -2.39 0.00 2.04 16 40 H 0.01 0.55 7.69 -2.38 -0.02 0.53 16 41 H 0.06 1.81 6.48 -2.39 -0.02 1.80 16 42 H 0.12 2.08 5.10 -2.39 -0.01 2.07 16 43 H 0.02 0.98 6.42 -2.39 -0.02 0.96 16 44 H -0.01 -0.45 7.24 -2.39 -0.02 -0.46 16 45 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 46 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.08 2.48 8.10 -2.38 -0.02 2.47 16 48 H 0.39 11.29 7.04 -92.71 -0.65 10.63 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.04 0.82 6.67 -2.39 -0.02 0.80 16 54 H 0.12 1.14 8.11 -2.39 -0.02 1.12 16 55 H 0.11 1.43 4.75 -2.39 -0.01 1.42 16 Total: -1.00 -84.86 399.35 4.51 -80.35 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.24 Total: 25.48 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.17 Total: 4.87 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -2.83 Total: -102.48 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.09 Total: -55.97 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -84.86 4.51 -80.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348854344.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.089 kcal (2) G-P(sol) polarization free energy of solvation -84.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds