Wall clock time and date at job start Tue Mar 31 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47392 * 2 1 4 4 H 1.09001 * 109.47723 * 304.98072 * 3 2 1 5 5 C 1.53088 * 109.49220 * 184.94759 * 3 2 1 6 6 C 1.53169 * 109.16445 * 182.40391 * 5 3 2 7 7 H 1.08996 * 109.62134 * 176.88831 * 6 5 3 8 8 C 1.53003 * 109.54420 * 297.11323 * 6 5 3 9 9 C 1.50701 * 109.47419 * 184.55399 * 8 6 5 10 10 O 1.21289 * 119.99780 * 0.02562 * 9 8 6 11 11 N 1.34769 * 120.00191 * 180.02562 * 9 8 6 12 12 C 1.46502 * 119.99981 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46858 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.50272 * 55.06357 * 13 12 11 15 15 C 1.53045 * 109.49739 * 175.15665 * 13 12 11 16 16 C 1.53035 * 109.54272 * 181.31451 * 15 13 12 17 17 C 1.53194 * 109.31220 * 298.64186 * 16 15 13 18 18 N 1.47199 * 108.85857 * 54.64941 * 17 16 15 19 19 C 1.36935 * 120.81754 * 126.33714 * 18 17 16 20 20 H 1.08007 * 119.99920 * 207.54133 * 19 18 17 21 21 C 1.38804 * 120.00238 * 27.53769 * 19 18 17 22 22 N 1.31624 * 120.00025 * 17.25587 * 21 19 18 23 23 Si 1.86801 * 120.00311 * 197.25673 * 21 19 18 24 24 H 1.48497 * 109.47244 * 60.00150 * 23 21 19 25 25 H 1.48504 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47113 * 300.00082 * 23 21 19 27 27 C 1.46936 * 118.55327 * 306.47807 * 18 17 16 28 28 C 1.53183 * 109.03691 * 56.97961 * 6 5 3 29 29 C 1.53089 * 109.16147 * 303.02162 * 28 6 5 30 30 O 1.42901 * 109.41829 * 57.60698 * 29 28 6 31 31 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46896 * 300.00290 * 1 2 3 33 33 H 1.09001 * 109.46754 * 59.99843 * 1 2 3 34 34 H 1.09003 * 109.47336 * 239.99596 * 2 1 3 35 35 H 1.09001 * 109.46754 * 120.00157 * 2 1 3 36 36 H 1.09005 * 109.52332 * 62.49488 * 5 3 2 37 37 H 1.08999 * 109.52001 * 302.30984 * 5 3 2 38 38 H 1.09005 * 109.46905 * 64.55641 * 8 6 5 39 39 H 1.08998 * 109.47148 * 304.55771 * 8 6 5 40 40 H 0.97001 * 120.00300 * 359.97438 * 11 9 8 41 41 H 1.08995 * 109.47442 * 59.99994 * 12 11 9 42 42 H 1.09002 * 109.46887 * 299.99450 * 12 11 9 43 43 H 1.08996 * 109.46079 * 301.34316 * 15 13 12 44 44 H 1.09003 * 109.45734 * 61.31334 * 15 13 12 45 45 H 1.09007 * 109.49366 * 58.58686 * 16 15 13 46 46 H 1.08993 * 109.50367 * 178.65164 * 16 15 13 47 47 H 1.09006 * 109.58336 * 174.41702 * 17 16 15 48 48 H 1.09002 * 109.58373 * 294.69613 * 17 16 15 49 49 H 0.96996 * 120.00327 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.58176 * 293.68056 * 27 18 17 51 51 H 1.08992 * 109.58520 * 173.40016 * 27 18 17 52 52 H 1.08996 * 109.51780 * 62.92587 * 28 6 5 53 53 H 1.09002 * 109.52064 * 183.11789 * 28 6 5 54 54 H 1.09003 * 109.47886 * 177.59285 * 29 28 6 55 55 H 1.09006 * 109.47901 * 297.62490 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5659 1.4448 -0.1245 6 6 4.0733 2.8887 -0.0633 7 1 5.1627 2.8956 -0.0957 8 6 3.5208 3.6762 -1.2531 9 6 4.1090 5.0637 -1.2540 10 8 4.8932 5.3904 -0.3883 11 7 3.7635 5.9415 -2.2165 12 6 4.3358 7.2901 -2.2176 13 6 3.7832 8.0775 -3.4074 14 1 2.6937 8.0689 -3.3750 15 6 4.2853 9.5217 -3.3416 16 6 3.7069 10.3187 -4.5131 17 6 4.1838 9.7004 -5.8311 18 7 3.8314 8.2712 -5.8412 19 6 3.1163 7.7323 -6.8772 20 1 2.4928 6.8663 -6.7102 21 6 3.1925 8.2991 -8.1420 22 7 4.1802 9.1171 -8.4382 23 14 1.8933 7.9010 -9.4238 24 1 0.5593 8.3194 -8.9231 25 1 2.2004 8.6274 -10.6821 26 1 1.8876 6.4392 -9.6855 27 6 4.2610 7.4339 -4.7128 28 6 3.5955 3.5313 1.2426 29 6 2.0686 3.4484 1.3143 30 8 1.6621 2.0816 1.2210 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8545 0.9973 -1.0756 37 1 3.9991 0.8715 0.6952 38 1 2.4357 3.7416 -1.1732 39 1 3.7869 3.1682 -2.1801 40 1 3.1366 5.6801 -2.9090 41 1 5.4207 7.2244 -2.2982 42 1 4.0703 7.7981 -1.2904 43 1 3.9675 9.9743 -2.4024 44 1 5.3738 9.5307 -3.3990 45 1 2.6180 10.2894 -4.4705 46 1 4.0456 11.3528 -4.4522 47 1 3.6965 10.2018 -6.6673 48 1 5.2646 9.8126 -5.9173 49 1 4.2337 9.5128 -9.3221 50 1 5.3484 7.3590 -4.7067 51 1 3.8268 6.4389 -4.8100 52 1 4.0293 3.0001 2.0898 53 1 3.9053 4.5760 1.2692 54 1 1.7259 3.8657 2.2611 55 1 1.6348 4.0137 0.4894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359668564.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:58 Heat of formation + Delta-G solvation = -113.911324 kcal Electronic energy + Delta-G solvation = -30520.412766 eV Core-core repulsion = 26555.655515 eV Total energy + Delta-G solvation = -3964.757251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.45008 -40.18911 -39.25179 -36.33007 -35.42581 -34.83581 -34.64967 -32.30730 -32.06734 -30.72031 -29.63213 -27.25504 -26.66348 -25.48328 -24.52263 -23.82681 -22.61473 -22.22410 -21.67139 -20.69335 -19.82755 -18.67386 -17.93768 -17.33774 -17.14235 -16.91899 -16.75346 -16.65182 -15.99135 -15.64288 -15.42985 -15.07573 -15.01865 -14.93274 -14.53700 -14.51084 -14.48298 -14.01496 -13.91873 -13.79731 -13.68085 -13.45006 -13.02070 -12.84618 -12.65859 -12.59132 -12.47634 -12.38946 -12.29087 -12.19282 -12.03593 -11.97188 -11.81915 -11.76078 -11.58448 -11.44593 -11.30540 -11.11263 -11.04856 -10.69838 -10.52225 -10.21808 -9.98549 -8.68226 -7.86264 -5.31507 1.47957 1.50539 1.56925 1.68869 2.27805 2.51868 2.90003 3.28588 3.59350 3.62350 3.75884 3.81328 3.97936 3.99091 4.02019 4.05485 4.10899 4.22962 4.24877 4.30972 4.40446 4.46584 4.50079 4.58151 4.61532 4.62740 4.67073 4.74935 4.77804 4.78495 4.88472 4.91218 4.95378 5.00818 5.01117 5.10142 5.14487 5.17734 5.20445 5.22312 5.25800 5.32967 5.34055 5.38138 5.40810 5.49191 5.53125 5.58074 5.66917 5.78066 6.37032 6.38974 6.59932 7.14878 7.29503 7.86432 8.39175 9.20196 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.002411 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.950925 B =11609.261319 C =13160.727003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.082 3.918 4 H 0.065 0.935 5 C -0.139 4.139 6 C -0.071 4.071 7 H 0.068 0.932 8 C -0.138 4.138 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.722 5.722 12 C 0.138 3.862 13 C -0.100 4.100 14 H 0.076 0.924 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.153 3.847 28 C -0.152 4.152 29 C 0.061 3.939 30 O -0.393 6.393 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.411 0.589 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.052 0.948 48 H -0.008 1.008 49 H 0.249 0.751 50 H 0.003 0.997 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.074 0.926 54 H 0.096 0.904 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 -14.116 18.309 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.083 0.917 5 C -0.177 4.177 6 C -0.090 4.090 7 H 0.087 0.913 8 C -0.178 4.178 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.373 5.373 12 C 0.014 3.986 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.028 3.972 28 C -0.189 4.189 29 C -0.016 4.016 30 O -0.313 6.313 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.247 0.753 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.010 0.990 49 H 0.058 0.942 50 H 0.021 0.979 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.092 0.908 54 H 0.114 0.886 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.876 -13.910 18.894 23.963 hybrid contribution -0.197 0.362 -1.592 1.645 sum -5.072 -13.548 17.302 22.553 Atomic orbital electron populations 1.21713 0.95384 1.01896 1.01743 1.21584 0.96610 0.93858 1.03258 1.22338 0.93711 0.94539 0.86892 0.91707 1.22232 0.96058 0.95558 1.03839 1.20879 1.00385 0.94364 0.93355 0.91341 1.21912 1.02706 0.91349 1.01819 1.21141 0.80913 0.87780 0.80387 1.90647 1.36775 1.79927 1.38453 1.46107 1.47694 1.13481 1.30065 1.21209 0.97523 0.82056 0.97812 1.21707 1.00766 0.95695 0.93830 0.90525 1.21343 0.99955 0.94041 0.98255 1.21991 1.00223 0.98830 0.95830 1.20683 0.95105 0.84280 0.95360 1.44363 1.63648 1.04584 1.20693 1.19515 1.18678 1.13097 0.87819 0.90998 1.25807 0.99229 1.00903 0.98910 1.70194 1.31275 1.36109 1.20773 0.85351 0.79303 0.77853 0.78006 1.20324 1.22467 1.19906 1.21010 0.95398 0.93863 0.86972 1.22236 0.96579 1.02362 0.97754 1.22621 0.93759 0.82820 1.02360 1.87901 1.78799 1.25032 1.39528 0.91970 0.93325 0.92652 0.89019 0.91623 0.89068 0.90998 0.87427 0.86655 0.75314 0.92860 0.91219 0.90252 0.92797 0.92821 0.91320 0.92998 0.98988 0.94229 0.97856 0.92349 0.91714 0.90794 0.88568 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.19 16 2 C -0.12 -1.41 5.64 30.60 0.17 -1.24 16 3 C 0.08 1.19 2.37 30.63 0.07 1.26 16 4 H 0.07 0.86 6.71 -2.39 -0.02 0.85 16 5 C -0.14 -1.91 4.92 30.68 0.15 -1.76 16 6 C -0.07 -1.24 2.34 -10.67 -0.02 -1.27 16 7 H 0.07 1.41 7.96 -2.39 -0.02 1.39 16 8 C -0.14 -2.26 4.61 29.85 0.14 -2.12 16 9 C 0.51 11.98 7.53 87.66 0.66 12.64 16 10 O -0.58 -17.68 13.99 -3.06 -0.04 -17.72 16 11 N -0.72 -16.50 5.33 -463.06 -2.47 -18.97 16 12 C 0.14 3.62 5.07 86.38 0.44 4.05 16 13 C -0.10 -2.97 2.38 -10.72 -0.03 -3.00 16 14 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 15 C -0.10 -2.94 5.17 30.62 0.16 -2.78 16 16 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 17 C 0.17 8.14 5.33 86.31 0.46 8.60 16 18 N -0.61 -29.51 3.01 -698.39 -2.10 -31.61 16 19 C -0.26 -13.82 9.59 84.03 0.81 -13.01 16 20 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 21 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 22 N -0.94 -55.09 11.18 21.65 0.24 -54.85 16 23 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.15 5.89 5.59 86.36 0.48 6.37 16 28 C -0.15 -2.93 5.40 30.69 0.17 -2.77 16 29 C 0.06 1.06 6.57 72.01 0.47 1.53 16 30 O -0.39 -7.36 9.94 -148.98 -1.48 -8.84 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.46 5.03 -2.38 -0.01 1.45 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 8.13 7.69 -92.71 -0.71 7.41 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 2.81 6.04 -2.38 -0.01 2.80 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 52 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 53 H 0.07 1.75 5.92 -2.39 -0.01 1.74 16 54 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 55 H 0.05 0.85 6.50 -2.38 -0.02 0.84 16 Total: -1.00 -66.88 411.21 1.75 -65.13 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.14 Total: 22.75 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.44 Total: -1.64 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.33 Total: -105.43 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.52 Total: -26.56 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.88 1.75 -65.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359668564.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.782 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds