Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 H 1.09002 * 109.48672 * 305.03379 * 3 2 1 5 5 C 1.53086 * 109.48300 * 184.99975 * 3 2 1 6 6 C 1.53173 * 109.16589 * 182.40985 * 5 3 2 7 7 H 1.09000 * 109.54195 * 297.02928 * 6 5 3 8 8 C 1.53002 * 109.54857 * 176.84821 * 6 5 3 9 9 C 1.50698 * 109.47431 * 175.00266 * 8 6 5 10 10 O 1.21280 * 120.00046 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99705 * 180.02562 * 9 8 6 12 12 C 1.46502 * 119.99449 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46681 * 180.02562 * 12 11 9 14 14 H 1.08991 * 109.49966 * 55.00155 * 13 12 11 15 15 C 1.53048 * 109.49716 * 175.06600 * 13 12 11 16 16 C 1.53103 * 109.50389 * 181.31283 * 15 13 12 17 17 C 1.53190 * 109.32986 * 298.65634 * 16 15 13 18 18 N 1.46921 * 108.77635 * 54.63874 * 17 16 15 19 19 C 1.36936 * 120.63296 * 126.36865 * 18 17 16 20 20 H 1.07993 * 120.00391 * 331.85858 * 19 18 17 21 21 C 1.38819 * 120.00017 * 151.85668 * 19 18 17 22 22 N 1.31619 * 119.99679 * 343.07199 * 21 19 18 23 23 Si 1.86797 * 120.00224 * 163.07340 * 21 19 18 24 24 H 1.48505 * 109.47181 * 59.99637 * 23 21 19 25 25 H 1.48500 * 109.47177 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46886 * 300.00021 * 23 21 19 27 27 C 1.46933 * 118.73630 * 306.38706 * 18 17 16 28 28 C 1.53181 * 109.03593 * 56.97960 * 6 5 3 29 29 C 1.53093 * 109.16370 * 303.02086 * 28 6 5 30 30 O 1.42905 * 109.47643 * 65.05818 * 3 2 1 31 31 H 1.08994 * 109.47431 * 299.99623 * 1 2 3 32 32 H 1.09004 * 109.47445 * 60.00094 * 1 2 3 33 33 H 1.09005 * 109.47358 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46785 * 240.00454 * 2 1 3 35 35 H 1.08995 * 109.47097 * 120.00377 * 2 1 3 36 36 H 1.09001 * 109.52101 * 62.50373 * 5 3 2 37 37 H 1.09004 * 109.52169 * 302.31801 * 5 3 2 38 38 H 1.08997 * 109.46512 * 54.99448 * 8 6 5 39 39 H 1.08997 * 109.46918 * 295.00378 * 8 6 5 40 40 H 0.96999 * 120.00286 * 0.02562 * 11 9 8 41 41 H 1.08999 * 109.47198 * 59.99930 * 12 11 9 42 42 H 1.09003 * 109.47172 * 299.99593 * 12 11 9 43 43 H 1.09006 * 109.45732 * 301.36859 * 15 13 12 44 44 H 1.09004 * 109.46119 * 61.32395 * 15 13 12 45 45 H 1.08997 * 109.48601 * 178.69902 * 16 15 13 46 46 H 1.08999 * 109.48697 * 58.61602 * 16 15 13 47 47 H 1.09002 * 109.58739 * 294.84330 * 17 16 15 48 48 H 1.09005 * 109.70391 * 174.49140 * 17 16 15 49 49 H 0.97009 * 119.99606 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58493 * 293.81961 * 27 18 17 51 51 H 1.09002 * 109.70236 * 173.47108 * 27 18 17 52 52 H 1.09003 * 109.51895 * 62.92589 * 28 6 5 53 53 H 1.08997 * 109.52661 * 183.11604 * 28 6 5 54 54 H 1.08995 * 109.48117 * 297.62500 * 29 28 6 55 55 H 1.09002 * 109.49170 * 177.59739 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9819 -0.8414 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8884 -0.0645 7 1 3.6803 3.4494 -0.9124 8 6 5.6027 2.8958 -0.1104 9 6 6.0965 4.3182 -0.1738 10 8 5.3034 5.2357 -0.1820 11 7 7.4195 4.5705 -0.2225 12 6 7.8996 5.9533 -0.2847 13 6 9.4289 5.9605 -0.3319 14 1 9.7701 5.3444 -1.1637 15 6 9.9274 7.3951 -0.5206 16 6 11.4563 7.3987 -0.6006 17 6 12.0338 6.8539 0.7095 18 7 11.4467 5.5329 0.9720 19 6 12.2479 4.4467 1.2032 20 1 13.2377 4.4045 0.7735 21 6 11.7877 3.3998 1.9902 22 7 10.7476 3.5761 2.7773 23 14 12.6445 1.7410 1.9319 24 1 14.0627 1.9016 2.3421 25 1 11.9652 0.8002 2.8586 26 1 12.5871 1.2025 0.5491 27 6 9.9835 5.3995 0.9813 28 6 3.5969 3.5305 1.2421 29 6 2.0699 3.4479 1.3151 30 8 1.6632 2.0811 1.2216 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.8533 0.9974 -1.0773 37 1 3.9995 0.8708 0.6933 38 1 5.9421 2.3535 -0.9929 39 1 5.9953 2.4144 0.7852 40 1 8.0538 3.8367 -0.2171 41 1 7.5603 6.4957 0.5977 42 1 7.5066 6.4344 -1.1804 43 1 9.5137 7.8050 -1.4421 44 1 9.6066 8.0051 0.3239 45 1 11.8098 8.4176 -0.7582 46 1 11.7785 6.7690 -1.4300 47 1 11.7885 7.5320 1.5269 48 1 13.1166 6.7619 0.6236 49 1 10.4263 2.8446 3.3275 50 1 9.5709 5.9588 1.8209 51 1 9.7110 4.3481 1.0735 52 1 4.0313 2.9989 2.0888 53 1 3.9068 4.5752 1.2689 54 1 1.6355 4.0136 0.4909 55 1 1.7280 3.8650 2.2623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359668565.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = -117.573799 kcal Electronic energy + Delta-G solvation = -30506.561687 eV Core-core repulsion = 26541.645619 eV Total energy + Delta-G solvation = -3964.916068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.22134 -40.19499 -39.28149 -36.26325 -35.51121 -34.86911 -34.78534 -32.62390 -31.60235 -30.75004 -29.90287 -27.28642 -26.77103 -25.03557 -24.38912 -23.84998 -22.49426 -22.00558 -21.41665 -20.92609 -20.46690 -18.72686 -17.97192 -17.36982 -17.08114 -16.89495 -16.73382 -16.55101 -15.85780 -15.59420 -15.46169 -15.38696 -15.15855 -14.75926 -14.53872 -14.52271 -14.14358 -14.04684 -13.98970 -13.83507 -13.64500 -13.44188 -12.94082 -12.86240 -12.77673 -12.65478 -12.50870 -12.44704 -12.24725 -12.06046 -12.00203 -11.98041 -11.79346 -11.73020 -11.56181 -11.46395 -11.27237 -11.16563 -11.10016 -10.74147 -10.53160 -10.31523 -9.98783 -8.65465 -7.85267 -5.31369 1.49247 1.49994 1.57554 1.69037 2.30495 2.52579 2.87441 3.27123 3.60208 3.64189 3.68377 3.79473 4.00174 4.01818 4.06456 4.08958 4.16144 4.23255 4.26742 4.34966 4.40522 4.44353 4.51425 4.54606 4.55879 4.64660 4.68568 4.73532 4.81129 4.83143 4.87182 4.87989 4.93387 4.96540 5.02972 5.03405 5.12872 5.14764 5.17255 5.22074 5.23697 5.28264 5.37256 5.39533 5.43509 5.46931 5.54626 5.56071 5.67812 5.78735 6.34331 6.40455 6.59158 7.16690 7.28063 7.87447 8.40180 9.19812 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.002533 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.564191 B =11049.509920 C =12618.185318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.085 3.915 4 H 0.059 0.941 5 C -0.141 4.141 6 C -0.066 4.066 7 H 0.070 0.930 8 C -0.132 4.132 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.722 5.722 12 C 0.139 3.861 13 C -0.111 4.111 14 H 0.070 0.930 15 C -0.099 4.099 16 C -0.121 4.121 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.264 4.264 20 H 0.064 0.936 21 C -0.045 4.045 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.190 3.810 28 C -0.154 4.154 29 C 0.067 3.933 30 O -0.395 6.395 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.407 0.593 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.008 0.992 48 H 0.051 0.949 49 H 0.250 0.750 50 H -0.016 1.016 51 H 0.065 0.935 52 H 0.058 0.942 53 H 0.070 0.930 54 H 0.051 0.949 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 -3.489 -9.861 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.028 3.972 4 H 0.077 0.923 5 C -0.178 4.178 6 C -0.085 4.085 7 H 0.089 0.911 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.459 6.459 11 N -0.373 5.373 12 C 0.015 3.985 13 C -0.131 4.131 14 H 0.089 0.911 15 C -0.137 4.137 16 C -0.160 4.160 17 C 0.010 3.990 18 N -0.334 5.334 19 C -0.395 4.395 20 H 0.081 0.919 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.792 3.208 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.064 3.936 28 C -0.192 4.192 29 C -0.010 4.010 30 O -0.315 6.315 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.117 0.883 40 H 0.243 0.757 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.002 0.998 51 H 0.083 0.917 52 H 0.077 0.923 53 H 0.089 0.911 54 H 0.069 0.931 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.164 -3.035 -9.602 19.044 hybrid contribution 1.140 -0.716 0.573 1.463 sum -15.024 -3.750 -9.029 17.925 Atomic orbital electron populations 1.21705 0.95189 1.01991 1.01716 1.21578 0.96781 0.93521 1.03334 1.22291 0.93649 0.94639 0.86632 0.92315 1.22276 0.96001 0.95618 1.03931 1.20871 0.92971 0.96584 0.98092 0.91137 1.21774 0.97081 0.92398 1.05941 1.21179 0.81779 0.92571 0.74798 1.90611 1.55409 1.48188 1.51735 1.46150 1.07443 1.09513 1.74160 1.21211 0.93543 0.82814 1.00936 1.21898 0.92722 0.98589 0.99928 0.91115 1.21376 0.95923 0.94680 1.01760 1.21877 0.95473 1.00955 0.97720 1.21116 0.96622 0.86328 0.94965 1.44321 1.01996 1.04432 1.82666 1.19449 0.99192 0.96707 1.24114 0.91869 1.25739 0.99626 1.02725 0.96019 1.70194 1.28767 1.31733 1.26927 0.85405 0.77899 0.80019 0.77464 1.20789 1.22024 1.20003 1.20578 0.82491 0.99417 0.91147 1.22295 0.97011 1.02112 0.97744 1.22528 0.93439 0.82692 1.02326 1.87888 1.78858 1.25149 1.39564 0.93449 0.92555 0.91729 0.88809 0.91688 0.88774 0.91090 0.86334 0.88333 0.75707 0.93606 0.91044 0.90228 0.92913 0.89941 0.92375 0.97400 0.93026 0.94123 0.99836 0.91655 0.92289 0.91131 0.93061 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.81 71.98 0.71 -1.39 16 2 C -0.11 -1.67 5.64 30.59 0.17 -1.50 16 3 C 0.09 1.54 2.64 30.62 0.08 1.62 16 4 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.14 -2.42 4.70 30.68 0.14 -2.28 16 6 C -0.07 -1.43 1.92 -10.67 -0.02 -1.45 16 7 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 8 C -0.13 -2.92 5.18 29.85 0.15 -2.77 16 9 C 0.51 15.07 7.57 87.66 0.66 15.74 16 10 O -0.58 -20.44 14.01 -3.03 -0.04 -20.49 16 11 N -0.72 -21.92 5.33 -463.05 -2.47 -24.39 16 12 C 0.14 4.44 5.07 86.38 0.44 4.88 16 13 C -0.11 -3.82 2.37 -10.71 -0.03 -3.84 16 14 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.10 -3.00 5.17 30.64 0.16 -2.84 16 16 C -0.12 -3.79 6.08 30.69 0.19 -3.61 16 17 C 0.14 5.48 6.52 86.36 0.56 6.04 16 18 N -0.61 -29.71 2.99 -699.09 -2.09 -31.81 16 19 C -0.26 -14.08 9.58 84.04 0.81 -13.28 16 20 H 0.06 3.31 7.88 -2.91 -0.02 3.28 16 21 C -0.05 -2.43 4.92 84.86 0.42 -2.01 16 22 N -0.93 -52.75 11.19 21.65 0.24 -52.51 16 23 Si 0.96 42.97 29.59 68.60 2.03 45.00 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.19 8.61 4.39 86.36 0.38 8.99 16 28 C -0.15 -3.79 5.13 30.69 0.16 -3.64 16 29 C 0.07 1.47 6.84 72.01 0.49 1.96 16 30 O -0.39 -9.00 9.94 -148.98 -1.48 -10.48 16 31 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.41 12.05 7.70 -92.71 -0.71 11.33 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 49 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 50 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 51 H 0.07 3.24 5.26 -2.39 -0.01 3.23 16 52 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.07 2.08 6.07 -2.39 -0.01 2.07 16 54 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 55 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.08 417.83 1.78 -63.30 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.12 Total: 30.75 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.47 Total: 0.62 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.32 Total: -108.70 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.52 Total: -30.97 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.08 1.78 -63.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359668565.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.278 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds