Wall clock time and date at job start Tue Mar 31 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 H 1.08994 * 109.47930 * 304.97454 * 3 2 1 5 5 C 1.53092 * 109.47849 * 184.94075 * 3 2 1 6 6 C 1.53181 * 109.15876 * 182.40628 * 5 3 2 7 7 H 1.08997 * 109.54452 * 297.11360 * 6 5 3 8 8 C 1.53003 * 109.54130 * 176.93954 * 6 5 3 9 9 C 1.50694 * 109.47016 * 175.00293 * 8 6 5 10 10 O 1.21277 * 120.00410 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99917 * 179.97438 * 9 8 6 12 12 C 1.46504 * 120.00136 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46960 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.49915 * 304.92877 * 13 12 11 15 15 C 1.53040 * 109.49407 * 184.83787 * 13 12 11 16 16 C 1.53044 * 109.53837 * 178.68048 * 15 13 12 17 17 C 1.53198 * 109.31058 * 61.36780 * 16 15 13 18 18 N 1.46924 * 108.77305 * 305.36180 * 17 16 15 19 19 C 1.36933 * 120.63229 * 233.58620 * 18 17 16 20 20 H 1.08002 * 120.00066 * 151.85619 * 19 18 17 21 21 C 1.38811 * 120.00024 * 331.85129 * 19 18 17 22 22 N 1.31621 * 120.00044 * 343.06659 * 21 19 18 23 23 Si 1.86800 * 120.00115 * 163.06412 * 21 19 18 24 24 H 1.48505 * 109.46816 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47031 * 120.00149 * 23 21 19 26 26 H 1.48496 * 109.46982 * 240.00379 * 23 21 19 27 27 C 1.46933 * 118.73653 * 53.61187 * 18 17 16 28 28 C 1.53201 * 109.03923 * 56.98526 * 6 5 3 29 29 C 1.53091 * 109.15232 * 303.02273 * 28 6 5 30 30 O 1.42896 * 109.42317 * 57.60258 * 29 28 6 31 31 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46971 * 299.99430 * 1 2 3 33 33 H 1.08997 * 109.47042 * 60.00388 * 1 2 3 34 34 H 1.09002 * 109.47077 * 239.99637 * 2 1 3 35 35 H 1.09001 * 109.46961 * 120.00369 * 2 1 3 36 36 H 1.08997 * 109.52566 * 302.31627 * 5 3 2 37 37 H 1.09008 * 109.52140 * 62.44441 * 5 3 2 38 38 H 1.09006 * 109.46992 * 295.00092 * 8 6 5 39 39 H 1.08996 * 109.47019 * 54.99911 * 8 6 5 40 40 H 0.96999 * 120.00122 * 0.02562 * 11 9 8 41 41 H 1.08997 * 109.47193 * 300.00276 * 12 11 9 42 42 H 1.08995 * 109.46812 * 60.00078 * 12 11 9 43 43 H 1.09000 * 109.46446 * 298.70223 * 15 13 12 44 44 H 1.09003 * 109.46280 * 58.66530 * 15 13 12 45 45 H 1.09002 * 109.50163 * 301.41486 * 16 15 13 46 46 H 1.09004 * 109.52364 * 181.33096 * 16 15 13 47 47 H 1.08996 * 109.58326 * 185.57956 * 17 16 15 48 48 H 1.09001 * 109.58326 * 65.14930 * 17 16 15 49 49 H 0.96992 * 120.00100 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.58672 * 186.59870 * 27 18 17 51 51 H 1.09002 * 109.58725 * 66.17503 * 27 18 17 52 52 H 1.09008 * 109.53308 * 183.11582 * 28 6 5 53 53 H 1.08996 * 109.52320 * 62.92293 * 28 6 5 54 54 H 1.09005 * 109.47885 * 297.61797 * 29 28 6 55 55 H 1.08995 * 109.48109 * 177.59852 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5659 1.4444 -0.1243 6 6 4.0734 2.8884 -0.0631 7 1 3.6800 3.4495 -0.9107 8 6 5.6027 2.8958 -0.1098 9 6 6.0964 4.3182 -0.1733 10 8 5.3034 5.2357 -0.1800 11 7 7.4195 4.5707 -0.2217 12 6 7.8995 5.9535 -0.2840 13 6 9.4287 5.9608 -0.3306 14 1 9.8214 5.4037 0.5200 15 6 9.9345 7.4041 -0.2740 16 6 11.4649 7.4111 -0.2874 17 6 11.9630 6.7749 -1.5890 18 7 11.3645 5.4398 -1.7220 19 6 12.1529 4.3389 -1.9260 20 1 11.8242 3.3685 -1.5843 21 6 13.3744 4.4701 -2.5720 22 7 13.6338 5.5516 -3.2759 23 14 14.6502 3.1118 -2.4425 24 1 14.1178 2.0115 -1.5991 25 1 14.9590 2.5918 -3.7987 26 1 15.8882 3.6527 -1.8260 27 6 9.9038 5.3083 -1.6326 28 6 3.5957 3.5311 1.2430 29 6 2.0687 3.4483 1.3144 30 8 1.6621 2.0816 1.2210 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.9989 0.8710 0.6953 37 1 3.8545 0.9960 -1.0750 38 1 5.9959 2.4144 0.7856 39 1 5.9418 2.3537 -0.9925 40 1 8.0539 3.8370 -0.2160 41 1 7.5067 6.4345 -1.1797 42 1 7.5599 6.4960 0.5983 43 1 9.5613 7.9539 -1.1380 44 1 9.5773 7.8785 0.6401 45 1 11.8388 6.8405 0.5628 46 1 11.8251 8.4379 -0.2232 47 1 13.0491 6.6873 -1.5605 48 1 11.6663 7.3944 -2.4353 49 1 14.4875 5.6435 -3.7270 50 1 9.6312 4.2529 -1.6331 51 1 9.4392 5.8082 -2.4826 52 1 3.9055 4.5759 1.2697 53 1 4.0294 2.9999 2.0902 54 1 1.6350 4.0137 0.4896 55 1 1.7259 3.8657 2.2611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359668567.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:16 Heat of formation + Delta-G solvation = -118.247671 kcal Electronic energy + Delta-G solvation = -30007.021501 eV Core-core repulsion = 26042.076212 eV Total energy + Delta-G solvation = -3964.945289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.21152 -40.19254 -39.29600 -36.35495 -35.51613 -34.85249 -34.64573 -32.30896 -32.07495 -30.73076 -29.85551 -27.26469 -26.74054 -25.02288 -24.36421 -23.81467 -22.60485 -22.01968 -21.40832 -20.93095 -20.45846 -18.69292 -17.93597 -17.35504 -17.05407 -16.82294 -16.76104 -16.55911 -15.95232 -15.72966 -15.49442 -15.30115 -15.03812 -14.86742 -14.53449 -14.49733 -14.13803 -14.03377 -13.97450 -13.74102 -13.67542 -13.41250 -13.00542 -12.89476 -12.77107 -12.64164 -12.51276 -12.44159 -12.22823 -12.04674 -11.96309 -11.94910 -11.82279 -11.71937 -11.58397 -11.44416 -11.30044 -11.15656 -11.09081 -10.73015 -10.54154 -10.30278 -9.99098 -8.67665 -7.86604 -5.32677 1.46474 1.48798 1.58690 1.71509 2.29287 2.51206 2.88657 3.28362 3.59807 3.65005 3.69757 3.82595 3.99568 4.01837 4.03532 4.04382 4.13172 4.24445 4.30163 4.40387 4.42062 4.45696 4.52976 4.56604 4.58772 4.62695 4.71139 4.76012 4.78360 4.85935 4.88741 4.89669 4.94916 4.98278 5.01436 5.05540 5.10145 5.13633 5.18576 5.22944 5.24357 5.29690 5.33745 5.40659 5.44924 5.47422 5.53925 5.58596 5.67285 5.77938 6.35514 6.39344 6.61838 7.15082 7.31458 7.86481 8.38789 9.19782 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002023 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.536691 B =13837.317454 C =15184.200880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.085 3.915 4 H 0.053 0.947 5 C -0.140 4.140 6 C -0.071 4.071 7 H 0.061 0.939 8 C -0.131 4.131 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.722 5.722 12 C 0.139 3.861 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.258 4.258 20 H 0.072 0.928 21 C -0.055 4.055 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.153 3.847 28 C -0.150 4.150 29 C 0.063 3.937 30 O -0.394 6.394 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.411 0.589 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.051 0.949 48 H -0.009 1.009 49 H 0.248 0.752 50 H 0.059 0.941 51 H 0.004 0.996 52 H 0.072 0.928 53 H 0.068 0.932 54 H 0.045 0.955 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.809 -8.081 9.568 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.027 3.973 4 H 0.071 0.929 5 C -0.177 4.177 6 C -0.090 4.090 7 H 0.080 0.920 8 C -0.170 4.170 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.374 5.374 12 C 0.014 3.986 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.388 4.388 20 H 0.090 0.910 21 C -0.250 4.250 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.186 1.186 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.027 3.973 28 C -0.188 4.188 29 C -0.013 4.013 30 O -0.314 6.314 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.247 0.753 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.009 0.991 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.021 0.979 52 H 0.091 0.909 53 H 0.087 0.913 54 H 0.063 0.937 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.327 -7.509 9.616 25.443 hybrid contribution 1.583 -0.218 -0.703 1.746 sum -20.744 -7.727 8.913 23.863 Atomic orbital electron populations 1.21709 0.95391 1.01956 1.01632 1.21576 0.96631 0.93576 1.03397 1.22272 0.93936 0.94527 0.86550 0.92939 1.22262 0.95716 0.95752 1.04001 1.20898 0.93487 0.96444 0.98148 0.92023 1.21771 0.96640 0.92229 1.06386 1.21228 0.81786 0.92583 0.74756 1.90638 1.55540 1.48340 1.51526 1.46112 1.07452 1.09357 1.74471 1.21197 0.92948 0.83097 1.01344 1.21705 0.92995 0.97945 0.99348 0.90505 1.21340 0.95097 0.95232 1.01903 1.22004 0.96278 1.00064 0.98590 1.20622 0.97561 0.84527 0.92558 1.44320 1.01198 1.03941 1.83775 1.19575 1.00164 0.89261 1.29817 0.91005 1.25834 1.02187 0.99762 0.97211 1.70204 1.23433 1.30431 1.34278 0.85222 0.79072 0.79245 0.77003 1.18626 1.22213 1.21984 1.21024 0.83832 0.98388 0.94025 1.22278 0.96580 1.02244 0.97688 1.22557 0.93946 0.82611 1.02199 1.87884 1.78945 1.25131 1.39397 0.91758 0.93340 0.92857 0.89034 0.91292 0.90353 0.89226 0.86845 0.86798 0.75267 0.92930 0.91313 0.92832 0.90286 0.92764 0.91363 0.93076 0.99063 0.94254 0.92262 0.97853 0.90926 0.91336 0.93709 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.81 71.98 0.71 -1.16 16 2 C -0.11 -1.41 5.64 30.60 0.17 -1.23 16 3 C 0.08 1.31 2.64 30.62 0.08 1.39 16 4 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 5 C -0.14 -1.90 4.71 30.69 0.14 -1.75 16 6 C -0.07 -1.23 1.91 -10.66 -0.02 -1.25 16 7 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 8 C -0.13 -2.08 5.18 29.85 0.15 -1.93 16 9 C 0.51 11.98 7.57 87.65 0.66 12.64 16 10 O -0.58 -17.83 14.00 -3.02 -0.04 -17.87 16 11 N -0.72 -16.59 5.33 -463.07 -2.47 -19.06 16 12 C 0.14 3.65 5.07 86.38 0.44 4.09 16 13 C -0.10 -2.99 2.38 -10.72 -0.03 -3.01 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 16 C -0.13 -4.68 6.08 30.68 0.19 -4.49 16 17 C 0.17 8.23 5.30 86.37 0.46 8.69 16 18 N -0.61 -29.47 2.99 -699.09 -2.09 -31.56 16 19 C -0.26 -13.65 9.58 84.03 0.81 -12.85 16 20 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 21 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 22 N -0.94 -55.14 11.20 21.65 0.24 -54.90 16 23 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 27 C 0.15 5.89 5.60 86.36 0.48 6.37 16 28 C -0.15 -2.87 5.13 30.69 0.16 -2.71 16 29 C 0.06 1.16 6.84 72.01 0.49 1.65 16 30 O -0.39 -7.66 9.94 -148.98 -1.48 -9.14 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.73 7.82 -2.39 -0.02 0.71 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.41 8.14 7.70 -92.71 -0.71 7.43 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 48 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 51 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 52 H 0.07 1.71 6.07 -2.38 -0.01 1.70 16 53 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 55 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.29 417.82 1.78 -65.51 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.12 Total: 22.09 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.47 Total: -0.93 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.32 Total: -105.53 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.52 Total: -27.01 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.29 1.78 -65.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359668567.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.739 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds