Wall clock time and date at job start Tue Mar 31 2020 23:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47652 * 2 1 4 4 H 1.08993 * 109.47026 * 305.00283 * 3 2 1 5 5 C 1.53003 * 109.46615 * 64.99890 * 3 2 1 6 6 C 1.53001 * 109.47255 * 184.99547 * 3 2 1 7 7 H 1.09002 * 109.47104 * 294.58474 * 6 3 2 8 8 C 1.52991 * 109.47052 * 54.58493 * 6 3 2 9 9 N 1.46502 * 109.46864 * 174.58259 * 6 3 2 10 10 C 1.34779 * 119.99851 * 122.63783 * 9 6 3 11 11 O 1.21347 * 119.99864 * 3.93431 * 10 9 6 12 12 C 1.49443 * 120.00063 * 183.93034 * 10 9 6 13 13 O 1.21348 * 120.00139 * 4.84279 * 12 10 9 14 14 N 1.34779 * 120.00031 * 184.84095 * 12 10 9 15 15 C 1.46502 * 120.00254 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47306 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46679 * 299.99492 * 16 15 14 18 18 C 1.52996 * 109.47384 * 59.99752 * 16 15 14 19 19 C 1.50698 * 109.46937 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00489 * 359.97438 * 19 16 15 21 21 C 1.37879 * 120.00004 * 180.02562 * 19 16 15 22 22 N 1.31511 * 119.99909 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 120.00339 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46946 * 59.99095 * 23 21 19 25 25 H 1.48496 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46678 * 299.99587 * 23 21 19 27 27 C 1.46491 * 120.00209 * 302.64247 * 9 6 3 28 28 C 1.53006 * 117.50090 * 356.84807 * 27 9 6 29 29 C 1.52998 * 60.00106 * 252.51340 * 28 27 9 30 30 H 1.08998 * 109.47182 * 300.00456 * 1 2 3 31 31 H 1.09010 * 109.46532 * 60.00104 * 1 2 3 32 32 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47182 * 239.99544 * 2 1 3 34 34 H 1.09009 * 109.46804 * 120.00368 * 2 1 3 35 35 H 1.09002 * 109.47148 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47482 * 299.99762 * 5 3 2 37 37 H 1.08994 * 109.47628 * 60.00408 * 5 3 2 38 38 H 1.09004 * 109.47004 * 64.96421 * 8 6 3 39 39 H 1.08999 * 109.47137 * 184.96062 * 8 6 3 40 40 H 1.09003 * 109.47431 * 304.96259 * 8 6 3 41 41 H 0.97005 * 119.99962 * 359.97438 * 14 12 10 42 42 H 1.09000 * 109.46851 * 299.99940 * 15 14 12 43 43 H 1.08999 * 109.47140 * 59.99542 * 15 14 12 44 44 H 1.09003 * 109.46950 * 60.00500 * 17 16 15 45 45 H 1.09001 * 109.46806 * 180.02562 * 17 16 15 46 46 H 1.08994 * 109.47472 * 299.99992 * 17 16 15 47 47 H 1.09000 * 109.47169 * 60.00056 * 18 16 15 48 48 H 1.09001 * 109.47269 * 180.02562 * 18 16 15 49 49 H 1.09003 * 109.47273 * 300.00130 * 18 16 15 50 50 H 0.97003 * 120.00636 * 180.02562 * 22 21 19 51 51 H 1.09007 * 115.56272 * 142.54076 * 27 9 6 52 52 H 1.08998 * 117.49776 * 145.01926 * 28 27 9 53 53 H 1.09001 * 117.49192 * 0.02562 * 28 27 9 54 54 H 1.08997 * 117.50137 * 107.48540 * 29 28 27 55 55 H 1.09003 * 117.49617 * 252.51249 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5649 1.4441 -0.1256 7 1 4.0032 0.9900 0.7631 8 6 3.9756 0.6433 -1.3628 9 7 4.0426 2.8230 -0.2557 10 6 4.9357 3.3129 0.6269 11 8 5.3980 2.5913 1.4861 12 6 5.3565 4.7446 0.5475 13 8 4.8302 5.4882 -0.2542 14 7 6.3206 5.2101 1.3663 15 6 6.7328 6.6137 1.2888 16 6 7.8339 6.8795 2.3174 17 6 7.3034 6.5805 3.7210 18 6 9.0348 5.9783 2.0233 19 6 8.2574 8.3235 2.2380 20 1 7.7885 8.9855 1.5251 21 6 9.2444 8.7995 3.0750 22 7 9.8158 7.9933 3.9429 23 14 9.7699 10.5893 2.9763 24 1 8.6044 11.4639 3.2621 25 1 10.8385 10.8472 3.9746 26 1 10.2843 10.8797 1.6137 27 6 3.5495 3.6693 -1.3450 28 6 2.5941 3.0333 -2.3568 29 6 4.0348 3.3523 -2.7610 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.9983 3.1542 1.3073 36 1 0.5490 2.1252 1.3970 37 1 2.0699 1.5874 2.1492 38 1 3.6113 1.1464 -2.2586 39 1 5.0624 0.5699 -1.4039 40 1 3.5457 -0.3568 -1.3075 41 1 6.7411 4.6158 2.0074 42 1 7.1111 6.8267 0.2890 43 1 5.8772 7.2558 1.4979 44 1 6.9968 5.5361 3.7786 45 1 8.0877 6.7702 4.4538 46 1 6.4479 7.2225 3.9305 47 1 9.4127 6.1913 1.0233 48 1 9.8191 6.1673 2.7563 49 1 8.7282 4.9339 2.0809 50 1 10.5098 8.3282 4.5320 51 1 3.3889 4.7171 -1.0908 52 1 1.8048 3.6626 -2.7681 53 1 2.3321 1.9853 -2.2115 54 1 4.7209 2.5141 -2.8819 55 1 4.1934 4.1915 -3.4383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422490999.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:33 Heat of formation + Delta-G solvation = -46.545717 kcal Electronic energy + Delta-G solvation = -31484.387672 eV Core-core repulsion = 27522.551612 eV Total energy + Delta-G solvation = -3961.836059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.21515 -40.48223 -39.09636 -38.23890 -37.07731 -35.16177 -34.20713 -32.75221 -31.85621 -30.28184 -27.98117 -27.61090 -27.23670 -25.56710 -25.21170 -23.83716 -23.59573 -22.55887 -21.15570 -20.73062 -20.55654 -18.92876 -18.20537 -17.72267 -17.16854 -16.69570 -16.66017 -16.26835 -16.14240 -15.69731 -15.58253 -15.05986 -14.96251 -14.76270 -14.72609 -14.34481 -14.30853 -14.09564 -14.05261 -13.44172 -13.22406 -13.12472 -13.00573 -12.70951 -12.69196 -12.63930 -12.59780 -12.47460 -12.30988 -12.28891 -12.24689 -12.12676 -11.88769 -11.74743 -11.52377 -11.47789 -11.29880 -11.24340 -10.93770 -10.75189 -10.41422 -10.25487 -10.13911 -9.61890 -8.01869 -6.18659 0.32654 1.26356 1.45780 1.46795 1.53471 2.10833 2.37842 2.50002 2.88148 3.21851 3.28472 3.64666 3.78504 3.88917 3.96957 4.08650 4.10210 4.29308 4.33659 4.35939 4.46146 4.51614 4.59201 4.65939 4.67816 4.71514 4.75612 4.82236 4.85522 4.91380 4.93609 4.98700 5.01689 5.05837 5.07657 5.13159 5.15059 5.17665 5.21042 5.24139 5.30942 5.33472 5.40350 5.48488 5.50281 5.56900 5.62681 5.66391 5.98609 6.08966 6.17320 6.28785 6.39962 6.69186 6.85324 6.97299 7.49267 8.97315 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002461 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.186012 B =11374.592042 C =11760.551773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.107 4.107 4 H 0.104 0.896 5 C -0.145 4.145 6 C 0.131 3.869 7 H 0.082 0.918 8 C -0.182 4.182 9 N -0.540 5.540 10 C 0.509 3.491 11 O -0.547 6.547 12 C 0.497 3.503 13 O -0.535 6.535 14 N -0.683 5.683 15 C 0.146 3.854 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.526 4.526 20 H 0.052 0.948 21 C 0.026 3.974 22 N -0.902 5.902 23 Si 0.949 3.051 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.038 3.962 28 C -0.174 4.174 29 C -0.189 4.189 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.411 0.589 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.023 0.977 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.260 0.740 51 H 0.143 0.857 52 H 0.120 0.880 53 H 0.132 0.868 54 H 0.099 0.901 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 -16.881 -11.922 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.126 4.126 4 H 0.121 0.879 5 C -0.202 4.202 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.239 4.239 9 N -0.270 5.270 10 C 0.292 3.708 11 O -0.425 6.425 12 C 0.278 3.722 13 O -0.414 6.414 14 N -0.335 5.335 15 C 0.023 3.977 16 C 0.051 3.949 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.066 4.066 28 C -0.211 4.211 29 C -0.228 4.228 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.070 0.930 51 H 0.160 0.840 52 H 0.138 0.862 53 H 0.150 0.850 54 H 0.117 0.883 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.757 -16.726 -11.867 27.128 hybrid contribution 1.056 1.063 0.746 1.674 sum -16.701 -15.663 -11.121 25.455 Atomic orbital electron populations 1.21809 0.94864 1.02136 1.02133 1.21659 0.96689 0.94263 1.02930 1.21850 0.92600 0.98430 0.99704 0.87858 1.21811 1.01947 0.99299 0.97142 1.21460 0.95412 0.79613 1.00587 0.89964 1.22718 1.01715 1.01673 0.97758 1.47355 1.39844 1.13517 1.26301 1.20134 0.80515 0.87846 0.82316 1.90723 1.55319 1.59866 1.36599 1.20281 0.81155 0.88825 0.81902 1.90578 1.54360 1.59101 1.37381 1.46101 1.36766 1.13295 1.37312 1.21526 0.97563 0.78701 0.99924 1.18365 0.90589 0.94941 0.91043 1.21707 0.99618 0.96663 1.00159 1.21703 1.00686 0.95819 0.99911 1.21203 1.20439 0.95035 1.19780 0.92969 1.25515 0.96110 1.00864 0.94919 1.69920 1.26196 1.35861 1.22045 0.85757 0.77786 0.81219 0.77690 1.20070 1.21133 1.20025 1.22555 1.04819 0.96177 0.83032 1.23959 0.93455 1.03816 0.99866 1.23532 0.98138 1.04076 0.97015 0.93002 0.91981 0.91991 0.89787 0.92339 0.95032 0.90830 0.93806 0.89175 0.93472 0.88436 0.75199 0.92691 0.92789 0.95418 0.91749 0.95786 0.95724 0.91757 0.95409 0.93038 0.83984 0.86158 0.85007 0.88261 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.12 -1.28 5.07 30.59 0.16 -1.12 16 3 C -0.11 -1.61 1.60 -10.79 -0.02 -1.62 16 4 H 0.10 1.35 4.46 -2.39 -0.01 1.34 16 5 C -0.14 -2.73 8.84 71.98 0.64 -2.09 16 6 C 0.13 2.57 2.13 44.99 0.10 2.66 16 7 H 0.08 2.00 6.92 -2.39 -0.02 1.98 16 8 C -0.18 -2.63 7.88 71.98 0.57 -2.06 16 9 N -0.54 -13.44 2.18 -775.60 -1.69 -15.13 16 10 C 0.51 16.47 7.73 87.27 0.67 17.14 16 11 O -0.55 -19.77 15.83 -3.24 -0.05 -19.82 16 12 C 0.50 17.80 7.79 87.27 0.68 18.48 16 13 O -0.54 -19.88 13.17 -3.24 -0.04 -19.92 16 14 N -0.68 -25.82 4.95 -464.42 -2.30 -28.12 16 15 C 0.15 6.14 4.50 86.38 0.39 6.53 16 16 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 17 C -0.12 -5.76 8.08 71.98 0.58 -5.18 16 18 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 19 C -0.53 -27.56 8.01 25.60 0.21 -27.36 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 21 C 0.03 1.35 5.15 84.66 0.44 1.79 16 22 N -0.90 -48.79 9.35 21.45 0.20 -48.59 16 23 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.04 0.83 5.06 45.00 0.23 1.06 16 28 C -0.17 -2.39 7.74 30.60 0.24 -2.16 16 29 C -0.19 -3.40 9.68 30.60 0.30 -3.10 16 30 H 0.05 0.55 6.56 -2.39 -0.02 0.53 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.67 5.95 -2.39 -0.01 0.65 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.03 0.73 7.77 -2.39 -0.02 0.71 16 36 H 0.07 1.14 6.57 -2.39 -0.02 1.12 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.10 3.44 -2.38 -0.01 1.10 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 0.97 5.95 -2.39 -0.01 0.95 16 41 H 0.41 15.41 5.64 -92.70 -0.52 14.89 16 42 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 45 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 46 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 48 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 49 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 50 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 51 H 0.14 3.87 5.51 -2.38 -0.01 3.86 16 52 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 53 H 0.13 1.41 3.58 -2.39 -0.01 1.41 16 54 H 0.10 1.75 6.61 -2.39 -0.02 1.73 16 55 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -59.44 404.29 4.94 -54.50 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.38 Total: 33.15 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.41 Total: -0.51 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.79 Total: -91.85 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.09 Total: -39.75 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -59.44 4.94 -54.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422490999.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.953 kcal (2) G-P(sol) polarization free energy of solvation -59.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds