Wall clock time and date at job start Tue Mar 31 2020 23:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 H 1.08999 * 109.46875 * 304.99728 * 3 2 1 5 5 C 1.52999 * 109.46984 * 64.99885 * 3 2 1 6 6 C 1.53005 * 109.46832 * 184.99647 * 3 2 1 7 7 H 1.09002 * 109.46916 * 55.16425 * 6 3 2 8 8 C 1.52991 * 109.47396 * 295.16213 * 6 3 2 9 9 N 1.46501 * 109.46659 * 175.16056 * 6 3 2 10 10 C 1.34778 * 119.99886 * 114.21554 * 9 6 3 11 11 O 1.21358 * 119.99710 * 4.54791 * 10 9 6 12 12 C 1.49444 * 120.00457 * 184.54709 * 10 9 6 13 13 O 1.21353 * 119.99850 * 5.01273 * 12 10 9 14 14 N 1.34770 * 120.00365 * 185.01588 * 12 10 9 15 15 C 1.46499 * 120.00290 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47430 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47266 * 299.99900 * 16 15 14 18 18 C 1.53002 * 109.46996 * 59.99889 * 16 15 14 19 19 C 1.50706 * 109.47336 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99419 * 0.02562 * 19 16 15 21 21 C 1.37874 * 119.99951 * 179.97438 * 19 16 15 22 22 N 1.31513 * 120.00181 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99981 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47164 * 59.99926 * 23 21 19 25 25 H 1.48500 * 109.47370 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46708 * 300.00200 * 23 21 19 27 27 C 1.46498 * 120.00418 * 294.21195 * 9 6 3 28 28 C 1.53002 * 117.49763 * 0.88764 * 27 9 6 29 29 C 1.52992 * 59.99957 * 252.50919 * 28 27 9 30 30 H 1.08993 * 109.46700 * 60.00519 * 1 2 3 31 31 H 1.09003 * 109.46527 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47361 * 300.00224 * 1 2 3 33 33 H 1.08998 * 109.47361 * 239.99775 * 2 1 3 34 34 H 1.09003 * 109.46827 * 119.99542 * 2 1 3 35 35 H 1.08997 * 109.47227 * 64.42349 * 5 3 2 36 36 H 1.09006 * 109.46496 * 184.42132 * 5 3 2 37 37 H 1.08997 * 109.47125 * 304.41974 * 5 3 2 38 38 H 1.09009 * 109.47323 * 61.78435 * 8 6 3 39 39 H 1.09000 * 109.47202 * 181.78508 * 8 6 3 40 40 H 1.09002 * 109.47197 * 301.78794 * 8 6 3 41 41 H 0.97004 * 120.00128 * 359.97438 * 14 12 10 42 42 H 1.09000 * 109.47029 * 300.00072 * 15 14 12 43 43 H 1.09005 * 109.47014 * 59.99525 * 15 14 12 44 44 H 1.09006 * 109.46967 * 60.00098 * 17 16 15 45 45 H 1.09000 * 109.47228 * 179.97438 * 17 16 15 46 46 H 1.08998 * 109.47458 * 299.99932 * 17 16 15 47 47 H 1.09003 * 109.46713 * 60.00512 * 18 16 15 48 48 H 1.09007 * 109.47256 * 179.97438 * 18 16 15 49 49 H 1.08993 * 109.47184 * 300.00231 * 18 16 15 50 50 H 0.97000 * 119.99948 * 179.97438 * 22 21 19 51 51 H 1.08999 * 115.55151 * 146.59329 * 27 9 6 52 52 H 1.09000 * 117.50026 * 359.97438 * 28 27 9 53 53 H 1.09001 * 117.49814 * 145.02021 * 28 27 9 54 54 H 1.09001 * 117.49835 * 252.51062 * 29 28 27 55 55 H 1.08998 * 117.50292 * 107.48933 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4443 -0.1256 7 1 3.8570 0.8824 -1.0128 8 6 4.1797 0.7940 1.1152 9 7 4.0436 2.8240 -0.2419 10 6 4.8018 3.3589 0.7357 11 8 5.1568 2.6732 1.6720 12 6 5.2053 4.7962 0.6668 13 8 4.7763 5.5049 -0.2200 14 7 6.0456 5.3052 1.5893 15 6 6.4415 6.7141 1.5214 16 6 7.3923 7.0329 2.6769 17 6 6.6858 6.7654 4.0073 18 6 8.6361 6.1480 2.5729 19 6 7.8001 8.4821 2.6066 20 1 7.4189 9.1126 1.8169 21 6 8.6590 9.0031 3.5510 22 7 9.1228 8.2353 4.5128 23 14 9.1640 10.7994 3.4643 24 1 7.9567 11.6584 3.5646 25 1 10.0869 11.1089 4.5858 26 1 9.8502 11.0589 2.1731 27 6 3.6983 3.6224 -1.4206 28 6 2.8177 2.9655 -2.4855 29 6 4.3040 3.2016 -2.7611 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.1328 1.6355 2.1436 36 1 1.9295 3.1756 1.2747 37 1 0.5551 2.0560 1.4350 38 1 3.8485 -0.2422 1.1843 39 1 5.2667 0.8238 1.0403 40 1 3.8618 1.3370 2.0053 41 1 6.3882 4.7388 2.2983 42 1 6.9445 6.9048 0.5733 43 1 5.5554 7.3445 1.5958 44 1 6.3912 5.7172 4.0579 45 1 7.3633 6.9922 4.8305 46 1 5.7997 7.3958 4.0814 47 1 9.1394 6.3387 1.6251 48 1 9.3137 6.3755 3.3959 49 1 8.3415 5.0998 2.6235 50 1 9.7273 8.6018 5.1769 51 1 3.5622 4.6891 -1.2426 52 1 2.4957 1.9392 -2.3093 53 1 2.1020 3.6001 -3.0082 54 1 4.5661 3.9914 -3.4650 55 1 4.9595 2.3308 -2.7659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422491004.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:38 Heat of formation + Delta-G solvation = -40.048409 kcal Electronic energy + Delta-G solvation = -31599.740848 eV Core-core repulsion = 27638.186534 eV Total energy + Delta-G solvation = -3961.554315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.27397 -40.37812 -38.85519 -38.25244 -37.31031 -35.15525 -34.21617 -32.74362 -31.74465 -29.60038 -27.86276 -27.60301 -27.20452 -26.58713 -25.16190 -23.84241 -23.30618 -22.67074 -21.18739 -20.63821 -20.01456 -18.80919 -17.91925 -17.64301 -17.38112 -16.82619 -16.60625 -16.36806 -16.33205 -15.97326 -15.61177 -15.09831 -14.95537 -14.75042 -14.55191 -14.48807 -14.24742 -14.05098 -13.70500 -13.23426 -13.19929 -13.11500 -13.01006 -12.91572 -12.74595 -12.68316 -12.62534 -12.55612 -12.30523 -12.28299 -12.17046 -12.10086 -11.92264 -11.53411 -11.51568 -11.37719 -11.26621 -11.23138 -11.09169 -10.74336 -10.41035 -10.11859 -9.88066 -9.49908 -8.01758 -6.18456 0.37030 1.30104 1.45693 1.46836 1.53411 2.14989 2.39161 2.50840 2.91172 3.21981 3.32498 3.72399 3.78952 3.81916 3.98125 4.09434 4.15742 4.27741 4.34482 4.34626 4.46708 4.55719 4.62360 4.66712 4.68683 4.73533 4.77693 4.85710 4.88325 4.95670 5.01348 5.02426 5.03370 5.07438 5.10442 5.13139 5.15760 5.20334 5.21856 5.24990 5.31355 5.33394 5.44993 5.50661 5.55213 5.63416 5.66654 5.66758 6.04487 6.09837 6.18111 6.31075 6.40531 6.75727 6.85999 7.01889 7.49490 8.97349 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.002547 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.362048 B =10989.723411 C =11530.134424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.104 4.104 4 H 0.091 0.909 5 C -0.147 4.147 6 C 0.140 3.860 7 H 0.092 0.908 8 C -0.138 4.138 9 N -0.544 5.544 10 C 0.510 3.490 11 O -0.527 6.527 12 C 0.493 3.507 13 O -0.540 6.540 14 N -0.682 5.682 15 C 0.146 3.854 16 C 0.052 3.948 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.026 3.974 22 N -0.901 5.901 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.032 3.968 28 C -0.164 4.164 29 C -0.188 4.188 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.260 0.740 51 H 0.150 0.850 52 H 0.117 0.883 53 H 0.118 0.882 54 H 0.104 0.896 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.512 -17.541 -11.851 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.123 4.123 4 H 0.109 0.891 5 C -0.204 4.204 6 C 0.039 3.961 7 H 0.110 0.890 8 C -0.195 4.195 9 N -0.274 5.274 10 C 0.293 3.707 11 O -0.404 6.404 12 C 0.274 3.726 13 O -0.419 6.419 14 N -0.334 5.334 15 C 0.023 3.977 16 C 0.051 3.949 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.072 4.072 28 C -0.201 4.201 29 C -0.226 4.226 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.070 0.930 51 H 0.166 0.834 52 H 0.135 0.865 53 H 0.137 0.863 54 H 0.122 0.878 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.488 -17.394 -11.794 26.106 hybrid contribution 0.871 1.141 0.571 1.545 sum -14.617 -16.253 -11.223 24.572 Atomic orbital electron populations 1.21808 0.95056 1.02062 1.02006 1.21539 0.96507 0.94310 1.02797 1.21748 0.93146 0.98129 0.99244 0.89050 1.21883 1.01781 0.99141 0.97606 1.21551 0.94725 0.79571 1.00234 0.89029 1.22297 1.00395 0.99655 0.97109 1.47297 1.47993 1.13911 1.18230 1.20031 0.80039 0.87336 0.83301 1.90835 1.54716 1.60475 1.34414 1.20570 0.80328 0.89170 0.82536 1.90527 1.54599 1.61805 1.35015 1.46080 1.44945 1.13125 1.29249 1.21506 0.97833 0.78635 0.99757 1.18359 0.91255 0.94786 0.90490 1.21701 0.98765 0.96778 1.00855 1.21702 0.99898 0.95901 1.00598 1.21211 1.28106 0.95236 1.11945 0.93044 1.25503 0.95887 1.00970 0.95007 1.69919 1.32794 1.36299 1.14980 0.85769 0.78024 0.81275 0.77450 1.20084 1.21112 1.20064 1.22791 1.06310 0.97236 0.80840 1.23581 0.93653 1.03163 0.99740 1.23368 0.96915 1.03857 0.98470 0.92315 0.92007 0.92915 0.90668 0.91695 0.92858 0.95301 0.91205 0.91425 0.93263 0.91629 0.75122 0.92825 0.92925 0.95307 0.91777 0.95854 0.95801 0.91787 0.95295 0.93040 0.83360 0.86490 0.86333 0.87763 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.27 5.03 30.60 0.15 -1.12 16 3 C -0.10 -1.57 1.76 -10.79 -0.02 -1.59 16 4 H 0.09 1.28 5.20 -2.39 -0.01 1.27 16 5 C -0.15 -2.81 8.54 71.98 0.61 -2.19 16 6 C 0.14 2.64 2.07 44.99 0.09 2.73 16 7 H 0.09 1.43 7.67 -2.39 -0.02 1.41 16 8 C -0.14 -2.99 6.85 71.98 0.49 -2.49 16 9 N -0.54 -13.16 2.43 -775.60 -1.88 -15.04 16 10 C 0.51 15.71 7.65 87.27 0.67 16.37 16 11 O -0.53 -17.33 11.71 -3.27 -0.04 -17.37 16 12 C 0.49 17.28 7.79 87.27 0.68 17.96 16 13 O -0.54 -19.99 13.11 -3.26 -0.04 -20.03 16 14 N -0.68 -25.30 4.95 -464.43 -2.30 -27.60 16 15 C 0.15 6.11 4.50 86.38 0.39 6.49 16 16 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 17 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 18 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 19 C -0.53 -27.53 8.01 25.60 0.21 -27.33 16 20 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 21 C 0.03 1.37 5.15 84.65 0.44 1.81 16 22 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 23 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.03 0.70 5.33 44.99 0.24 0.94 16 28 C -0.16 -2.37 8.52 30.59 0.26 -2.11 16 29 C -0.19 -3.40 10.42 30.59 0.32 -3.09 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.59 6.47 -2.39 -0.02 0.57 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.78 6.85 -2.39 -0.02 0.77 16 35 H 0.05 1.10 6.05 -2.39 -0.01 1.09 16 36 H 0.03 0.68 7.87 -2.38 -0.02 0.66 16 37 H 0.07 1.12 6.37 -2.39 -0.02 1.11 16 38 H 0.07 1.13 6.76 -2.38 -0.02 1.12 16 39 H 0.05 1.27 6.83 -2.39 -0.02 1.26 16 40 H 0.06 1.70 4.56 -2.39 -0.01 1.69 16 41 H 0.41 15.00 5.64 -92.71 -0.52 14.47 16 42 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.03 1.17 6.86 -2.38 -0.02 1.15 16 45 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 46 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 49 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 50 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 51 H 0.15 4.10 5.21 -4.84 -0.03 4.08 16 52 H 0.12 1.35 5.33 -2.39 -0.01 1.34 16 53 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 54 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 55 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -57.47 404.53 4.69 -52.79 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.36 Total: 33.51 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.36 Total: -2.23 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.98 Total: -91.06 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.08 Total: -37.41 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -57.47 4.69 -52.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422491004.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.738 kcal (2) G-P(sol) polarization free energy of solvation -57.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds