Wall clock time and date at job start Tue Mar 31 2020 23:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.09001 * 109.47472 * 54.99424 * 3 2 1 5 5 C 1.53005 * 109.47098 * 294.99617 * 3 2 1 6 6 C 1.53003 * 109.47204 * 174.99914 * 3 2 1 7 7 H 1.08993 * 109.47113 * 56.73375 * 6 3 2 8 8 C 1.52999 * 109.46919 * 176.73360 * 6 3 2 9 9 N 1.46496 * 109.46829 * 296.73135 * 6 3 2 10 10 C 1.34771 * 120.00143 * 119.89147 * 9 6 3 11 11 O 1.21350 * 120.00222 * 5.28668 * 10 9 6 12 12 C 1.49457 * 120.00323 * 185.29404 * 10 9 6 13 13 O 1.21346 * 119.99812 * 2.85593 * 12 10 9 14 14 N 1.34780 * 120.00156 * 182.85243 * 12 10 9 15 15 C 1.46494 * 119.99727 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.46692 * 179.97438 * 15 14 12 17 17 C 1.52991 * 109.47607 * 300.00357 * 16 15 14 18 18 C 1.53006 * 109.46805 * 60.00686 * 16 15 14 19 19 C 1.50700 * 109.46975 * 180.02562 * 16 15 14 20 20 H 1.07999 * 120.00245 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99978 * 180.02562 * 19 16 15 22 22 N 1.31515 * 120.00191 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 119.99996 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46943 * 119.99974 * 23 21 19 26 26 H 1.48491 * 109.47362 * 240.00072 * 23 21 19 27 27 C 1.46506 * 120.00042 * 299.88719 * 9 6 3 28 28 C 1.52998 * 117.49913 * 69.80373 * 27 9 6 29 29 C 1.52997 * 117.49884 * 1.14052 * 27 9 6 30 30 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46964 * 60.00373 * 1 2 3 32 32 H 1.08997 * 109.47615 * 300.00431 * 1 2 3 33 33 H 1.09000 * 109.46964 * 119.99627 * 2 1 3 34 34 H 1.08997 * 109.47615 * 239.99569 * 2 1 3 35 35 H 1.08997 * 109.47148 * 295.23017 * 5 3 2 36 36 H 1.08996 * 109.46853 * 55.23022 * 5 3 2 37 37 H 1.09004 * 109.47270 * 175.23037 * 5 3 2 38 38 H 1.09001 * 109.47208 * 297.01624 * 8 6 3 39 39 H 1.09002 * 109.47748 * 57.02252 * 8 6 3 40 40 H 1.09009 * 109.47002 * 177.02139 * 8 6 3 41 41 H 0.97004 * 119.99437 * 359.97438 * 14 12 10 42 42 H 1.08990 * 109.47483 * 300.00316 * 15 14 12 43 43 H 1.09002 * 109.46767 * 60.00680 * 15 14 12 44 44 H 1.09002 * 109.47173 * 60.00047 * 17 16 15 45 45 H 1.09000 * 109.47429 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.47407 * 300.00167 * 17 16 15 47 47 H 1.08995 * 109.47086 * 59.99998 * 18 16 15 48 48 H 1.09001 * 109.46975 * 179.97438 * 18 16 15 49 49 H 1.09002 * 109.47024 * 299.99371 * 18 16 15 50 50 H 0.96996 * 119.99948 * 179.97438 * 22 21 19 51 51 H 1.08997 * 115.54871 * 215.47172 * 27 9 6 52 52 H 1.09001 * 117.49448 * 359.97438 * 28 27 9 53 53 H 1.08993 * 117.49883 * 145.02172 * 28 27 9 54 54 H 1.09004 * 117.50144 * 214.97919 * 29 27 9 55 55 H 1.09001 * 117.50118 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9968 0.8564 -0.6839 8 6 4.0814 2.8822 0.0439 9 7 3.9493 0.8598 1.4128 10 6 4.7233 -0.2429 1.4478 11 8 5.1810 -0.6959 0.4192 12 6 5.0181 -0.9080 2.7533 13 8 4.5186 -0.4861 3.7756 14 7 5.8386 -1.9765 2.7953 15 6 6.1279 -2.6280 4.0750 16 6 7.0776 -3.8052 3.8447 17 6 6.4222 -4.8114 2.8968 18 6 8.3808 -3.2955 3.2259 19 6 7.3748 -4.4759 5.1611 20 1 6.9303 -4.1004 6.0710 21 6 8.2141 -5.5690 5.2040 22 7 8.7549 -6.0266 4.0960 23 14 8.5829 -6.3999 6.8359 24 1 7.8557 -5.6983 7.9241 25 1 8.1426 -7.8171 6.7804 26 1 10.0431 -6.3452 7.1003 27 6 3.4924 1.4739 2.6620 28 6 2.0037 1.3672 2.9985 29 6 2.5944 2.7081 2.5554 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 2.1376 1.6393 -2.1430 36 1 0.5558 2.0505 -1.4382 37 1 1.9239 3.1770 -1.2724 38 1 3.8415 3.2994 -0.9341 39 1 3.6090 3.4829 0.8211 40 1 5.1621 2.8886 0.1864 41 1 6.2375 -2.3139 1.9780 42 1 6.5944 -1.9111 4.7505 43 1 5.1995 -2.9915 4.5157 44 1 6.2070 -4.3266 1.9445 45 1 7.0991 -5.6499 2.7323 46 1 5.4938 -5.1746 3.3376 47 1 8.8477 -2.5787 3.9013 48 1 9.0576 -4.1341 3.0622 49 1 8.1656 -2.8107 2.2736 50 1 9.3456 -6.7954 4.1263 51 1 4.1996 1.4361 3.4906 52 1 1.3641 0.8405 2.2902 53 1 1.7315 1.2597 4.0484 54 1 2.7106 3.4821 3.3140 55 1 2.3433 3.0629 1.5558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422491006.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:42 Heat of formation + Delta-G solvation = -47.760750 kcal Electronic energy + Delta-G solvation = -31726.465794 eV Core-core repulsion = 27764.577047 eV Total energy + Delta-G solvation = -3961.888747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.25130 -40.53614 -39.13346 -38.22479 -36.74051 -35.16747 -34.42346 -32.75792 -32.45624 -29.28482 -27.97549 -27.61522 -27.26579 -26.53216 -24.93831 -23.65044 -23.32020 -22.48865 -21.20429 -20.96890 -20.58880 -18.93856 -18.20547 -17.73351 -17.20165 -16.74016 -16.62620 -16.44650 -15.79197 -15.77125 -15.54696 -15.22883 -14.86626 -14.74813 -14.72007 -14.49213 -14.17133 -14.06536 -13.66529 -13.59056 -13.23659 -13.19227 -13.12443 -12.72835 -12.67627 -12.59903 -12.56734 -12.47791 -12.39385 -12.30087 -12.25469 -12.12879 -11.95754 -11.56548 -11.53031 -11.43445 -11.40080 -11.25081 -11.01858 -10.74342 -10.42864 -10.32994 -10.11210 -9.60478 -8.02808 -6.19493 0.33388 1.27251 1.42360 1.46504 1.55889 2.10337 2.37452 2.49496 2.91163 3.21102 3.30010 3.62491 3.77493 3.87446 3.99679 4.05116 4.10122 4.30394 4.33597 4.35349 4.45729 4.49647 4.56210 4.65512 4.65582 4.68125 4.71519 4.82600 4.87114 4.92575 4.98974 5.01296 5.04167 5.04826 5.07219 5.12394 5.14629 5.15091 5.18899 5.22271 5.23687 5.34988 5.35976 5.47297 5.51801 5.56271 5.62276 5.66167 5.97793 6.08474 6.16888 6.29294 6.39507 6.68869 6.85042 6.97555 7.48681 8.96790 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002566 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.162638 B =10908.403775 C =11051.063078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.115 4.115 4 H 0.106 0.894 5 C -0.145 4.145 6 C 0.130 3.870 7 H 0.082 0.918 8 C -0.170 4.170 9 N -0.541 5.541 10 C 0.509 3.491 11 O -0.547 6.547 12 C 0.494 3.506 13 O -0.533 6.533 14 N -0.684 5.684 15 C 0.146 3.854 16 C 0.051 3.949 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.525 4.525 20 H 0.052 0.948 21 C 0.026 3.974 22 N -0.902 5.902 23 Si 0.949 3.051 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.054 3.946 28 C -0.193 4.193 29 C -0.175 4.175 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.410 0.590 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.260 0.740 51 H 0.128 0.872 52 H 0.103 0.897 53 H 0.099 0.901 54 H 0.121 0.879 55 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.602 20.010 -9.610 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.134 4.134 4 H 0.124 0.876 5 C -0.203 4.203 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.228 4.228 9 N -0.271 5.271 10 C 0.291 3.709 11 O -0.425 6.425 12 C 0.275 3.725 13 O -0.412 6.412 14 N -0.336 5.336 15 C 0.023 3.977 16 C 0.051 3.949 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.564 4.564 20 H 0.070 0.930 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.776 3.224 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.050 4.050 28 C -0.231 4.231 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.070 0.930 51 H 0.146 0.854 52 H 0.122 0.878 53 H 0.118 0.882 54 H 0.139 0.861 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.572 19.914 -9.490 27.002 hybrid contribution 0.876 -1.421 0.666 1.797 sum -14.696 18.494 -8.824 25.216 Atomic orbital electron populations 1.21793 0.94153 1.01762 1.02772 1.21557 0.97233 0.96629 1.00537 1.22023 0.92844 0.96845 1.01651 0.87613 1.21915 1.02336 1.00965 0.95051 1.21515 0.95988 0.95929 0.83711 0.89960 1.22496 1.01268 0.94174 1.04825 1.47367 1.47151 1.24681 1.07911 1.20158 0.80008 0.81842 0.88852 1.90722 1.51786 1.64672 1.35311 1.20290 0.80540 0.81997 0.89660 1.90667 1.51240 1.63668 1.35600 1.46088 1.45677 1.29252 1.12608 1.21509 0.98709 0.94498 0.82941 1.18366 0.91247 0.90288 0.95019 1.21698 0.98937 1.01050 0.96388 1.21701 0.99861 0.99744 0.96800 1.21271 1.28370 1.13535 0.93199 0.93012 1.25511 0.95528 0.97290 0.99049 1.69935 1.31762 1.24990 1.27366 0.85643 0.77708 0.78269 0.80801 1.19576 1.20898 1.20840 1.22087 0.94527 1.01250 0.87123 1.23609 0.95492 1.00921 1.03049 1.24062 1.00712 0.91208 1.05199 0.93344 0.90910 0.92064 0.94559 0.93188 0.92982 0.90914 0.90477 0.88849 0.89209 0.93450 0.75235 0.92723 0.92935 0.95456 0.91751 0.95837 0.95702 0.91761 0.95399 0.93045 0.85424 0.87836 0.88220 0.86057 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.61 71.98 0.69 -1.45 16 2 C -0.12 -2.31 4.44 30.59 0.14 -2.18 16 3 C -0.12 -1.70 1.19 -10.79 -0.01 -1.71 16 4 H 0.11 1.36 3.37 -2.39 -0.01 1.36 16 5 C -0.15 -1.48 8.46 71.98 0.61 -0.87 16 6 C 0.13 2.53 2.13 44.99 0.10 2.63 16 7 H 0.08 1.99 6.91 -2.39 -0.02 1.97 16 8 C -0.17 -2.41 8.48 71.98 0.61 -1.80 16 9 N -0.54 -13.47 2.01 -775.61 -1.56 -15.03 16 10 C 0.51 16.50 7.72 87.27 0.67 17.18 16 11 O -0.55 -19.81 15.82 -3.25 -0.05 -19.86 16 12 C 0.49 17.80 7.79 87.27 0.68 18.48 16 13 O -0.53 -19.97 13.36 -3.23 -0.04 -20.02 16 14 N -0.68 -26.03 4.95 -464.42 -2.30 -28.33 16 15 C 0.15 6.21 4.50 86.38 0.39 6.60 16 16 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 17 C -0.12 -5.75 8.08 71.98 0.58 -5.16 16 18 C -0.12 -5.73 8.08 71.98 0.58 -5.15 16 19 C -0.53 -27.64 8.01 25.60 0.21 -27.44 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 21 C 0.03 1.37 5.15 84.66 0.44 1.80 16 22 N -0.90 -48.87 9.35 21.45 0.20 -48.67 16 23 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.05 1.20 4.69 44.99 0.21 1.41 16 28 C -0.19 -3.59 9.65 30.62 0.30 -3.29 16 29 C -0.18 -2.40 7.97 30.62 0.24 -2.15 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.83 6.47 -2.39 -0.02 0.81 16 32 H 0.06 0.80 7.64 -2.39 -0.02 0.78 16 33 H 0.04 0.88 6.74 -2.39 -0.02 0.87 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.62 6.35 -2.39 -0.02 0.60 16 37 H 0.08 0.53 6.72 -2.39 -0.02 0.51 16 38 H 0.09 0.92 6.65 -2.39 -0.02 0.90 16 39 H 0.09 0.99 4.60 -2.39 -0.01 0.98 16 40 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.41 15.50 5.64 -92.71 -0.52 14.98 16 42 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 45 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 46 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 49 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 50 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 51 H 0.13 3.42 6.18 -2.39 -0.01 3.41 16 52 H 0.10 1.93 4.30 -2.39 -0.01 1.92 16 53 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 54 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 55 H 0.13 1.40 3.37 -2.39 -0.01 1.39 16 Total: -1.00 -60.15 401.08 5.06 -55.09 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.38 Total: 32.93 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.40 Total: -0.70 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.65 Total: -92.03 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.09 Total: -39.87 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -60.15 5.06 -55.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422491006.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.330 kcal (2) G-P(sol) polarization free energy of solvation -60.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds