Wall clock time and date at job start Tue Mar 31 2020 23:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.08996 * 109.46995 * 55.00010 * 3 2 1 5 5 C 1.52999 * 109.46896 * 294.99854 * 3 2 1 6 6 C 1.52997 * 109.46946 * 174.99913 * 3 2 1 7 7 H 1.09004 * 109.47711 * 56.40715 * 6 3 2 8 8 C 1.53004 * 109.47422 * 296.41088 * 6 3 2 9 9 N 1.46496 * 109.46925 * 176.41070 * 6 3 2 10 10 C 1.34778 * 119.99843 * 242.87308 * 9 6 3 11 11 O 1.21354 * 119.99977 * 5.43822 * 10 9 6 12 12 C 1.49452 * 120.00123 * 185.43275 * 10 9 6 13 13 O 1.21349 * 119.99993 * 5.23343 * 12 10 9 14 14 N 1.34770 * 120.00179 * 185.24107 * 12 10 9 15 15 C 1.46500 * 120.00164 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47083 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47345 * 299.99996 * 16 15 14 18 18 C 1.52998 * 109.47002 * 60.00455 * 16 15 14 19 19 C 1.50711 * 109.46871 * 179.97438 * 16 15 14 20 20 H 1.07997 * 119.99765 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99649 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00194 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99908 * 180.02562 * 21 19 16 24 24 H 1.48507 * 109.46950 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47179 * 120.00181 * 23 21 19 26 26 H 1.48502 * 109.47013 * 240.00376 * 23 21 19 27 27 C 1.46501 * 120.00202 * 62.87836 * 9 6 3 28 28 C 1.53005 * 117.49491 * 66.03863 * 27 9 6 29 29 C 1.53001 * 117.49666 * 357.37746 * 27 9 6 30 30 H 1.08998 * 109.47121 * 60.00381 * 1 2 3 31 31 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47644 * 300.00176 * 1 2 3 33 33 H 1.08998 * 109.47121 * 119.99618 * 2 1 3 34 34 H 1.09000 * 109.47229 * 239.99483 * 2 1 3 35 35 H 1.09000 * 109.47184 * 59.99950 * 5 3 2 36 36 H 1.09000 * 109.47085 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.46801 * 299.99803 * 5 3 2 38 38 H 1.08995 * 109.47684 * 185.92914 * 8 6 3 39 39 H 1.09002 * 109.46984 * 305.93367 * 8 6 3 40 40 H 1.08999 * 109.47161 * 65.92736 * 8 6 3 41 41 H 0.97003 * 120.00454 * 359.97438 * 14 12 10 42 42 H 1.08993 * 109.47341 * 299.99507 * 15 14 12 43 43 H 1.09002 * 109.47024 * 59.99602 * 15 14 12 44 44 H 1.08995 * 109.46985 * 59.99992 * 17 16 15 45 45 H 1.09000 * 109.46861 * 180.02562 * 17 16 15 46 46 H 1.08996 * 109.46602 * 299.99924 * 17 16 15 47 47 H 1.08994 * 109.47566 * 59.99421 * 18 16 15 48 48 H 1.09007 * 109.47246 * 179.97438 * 18 16 15 49 49 H 1.09008 * 109.47020 * 299.99437 * 18 16 15 50 50 H 0.97007 * 119.99776 * 179.97438 * 22 21 19 51 51 H 1.08998 * 115.55026 * 211.70205 * 27 9 6 52 52 H 1.08999 * 117.50221 * 359.97438 * 28 27 9 53 53 H 1.09001 * 117.49541 * 145.02614 * 28 27 9 54 54 H 1.09000 * 117.49224 * 214.97780 * 29 27 9 55 55 H 1.08998 * 117.50012 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9967 0.8516 -0.6806 8 6 3.9662 0.8412 1.4733 9 7 4.0602 2.8203 0.0397 10 6 4.8721 3.1821 -0.9734 11 8 5.1136 2.3975 -1.8672 12 6 5.4750 4.5494 -0.9962 13 8 5.3111 5.3005 -0.0572 14 7 6.2005 4.9484 -2.0596 15 6 6.7909 6.2890 -2.0821 16 6 7.5580 6.4864 -3.3912 17 6 8.6679 5.4385 -3.4950 18 6 6.5985 6.3319 -4.5728 19 6 8.1649 7.8658 -3.4146 20 1 8.0184 8.5344 -2.5792 21 6 8.9070 8.2739 -4.5025 22 7 9.0848 7.4599 -5.5200 23 14 9.6598 9.9833 -4.5313 24 1 9.3154 10.6971 -3.2754 25 1 11.1360 9.8721 -4.6481 26 1 9.1269 10.7393 -5.6931 27 6 3.6731 3.8031 1.0549 28 6 4.1757 3.5793 2.4826 29 6 2.7008 3.3474 2.1447 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1541 -1.3076 37 1 2.0699 1.5874 -2.1491 38 1 5.0434 0.9381 1.6085 39 1 3.4504 1.3688 2.2757 40 1 3.6906 -0.2132 1.4960 41 1 6.3317 4.3480 -2.8101 42 1 6.0003 7.0356 -2.0078 43 1 7.4748 6.3990 -1.2405 44 1 8.2286 4.4411 -3.4782 45 1 9.2146 5.5795 -4.4274 46 1 9.3514 5.5487 -2.6531 47 1 5.8078 7.0784 -4.4988 48 1 7.1448 6.4731 -5.5054 49 1 6.1591 5.3344 -4.5561 50 1 9.6067 7.7472 -6.2856 51 1 3.5913 4.8324 0.7057 52 1 4.7940 2.7007 2.6666 53 1 4.4240 4.4614 3.0727 54 1 1.9795 4.0771 2.5127 55 1 2.3494 2.3163 2.1066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422491008.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:47 Heat of formation + Delta-G solvation = -47.330760 kcal Electronic energy + Delta-G solvation = -31520.147376 eV Core-core repulsion = 27558.277274 eV Total energy + Delta-G solvation = -3961.870101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.21719 -40.48000 -39.07197 -38.22941 -37.05517 -35.15277 -34.17318 -32.74962 -31.93296 -30.22214 -27.97763 -27.61300 -27.24124 -25.58498 -25.21845 -23.78405 -23.58078 -22.52416 -21.10290 -20.79896 -20.57744 -18.98870 -18.19040 -17.72254 -17.22301 -16.67854 -16.59753 -16.23591 -16.03674 -15.73793 -15.56694 -15.02510 -14.95299 -14.79208 -14.72730 -14.32569 -14.24797 -14.09889 -14.06093 -13.42515 -13.23475 -13.14396 -12.99397 -12.85993 -12.72405 -12.58252 -12.53250 -12.49820 -12.32419 -12.30054 -12.18216 -12.12768 -11.89378 -11.68676 -11.52737 -11.47290 -11.33355 -11.24200 -10.95371 -10.74105 -10.42773 -10.33003 -10.10671 -9.59057 -8.02608 -6.19194 0.33844 1.26958 1.42441 1.46595 1.55933 2.09978 2.37659 2.49672 2.93384 3.21311 3.30271 3.63940 3.78287 3.89186 3.98944 4.06279 4.11006 4.29751 4.33588 4.35892 4.45958 4.50995 4.59656 4.65768 4.66747 4.72238 4.74025 4.83780 4.86331 4.92607 4.95553 4.98131 5.01559 5.05294 5.06365 5.13741 5.14892 5.18920 5.22206 5.24244 5.30799 5.32577 5.40039 5.48023 5.50707 5.56122 5.62453 5.66419 5.98325 6.08761 6.17107 6.29506 6.39717 6.69357 6.85300 6.97558 7.48922 8.96971 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.002502 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.822227 B =11188.161671 C =11722.715384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.143 4.143 6 C 0.131 3.869 7 H 0.083 0.917 8 C -0.179 4.179 9 N -0.540 5.540 10 C 0.509 3.491 11 O -0.545 6.545 12 C 0.495 3.505 13 O -0.534 6.534 14 N -0.684 5.684 15 C 0.146 3.854 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.025 3.975 22 N -0.902 5.902 23 Si 0.949 3.051 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.051 3.949 28 C -0.187 4.187 29 C -0.178 4.178 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.410 0.590 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.023 0.977 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.260 0.740 51 H 0.129 0.871 52 H 0.103 0.897 53 H 0.100 0.900 54 H 0.118 0.882 55 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.816 -15.152 15.221 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.122 4.122 4 H 0.120 0.880 5 C -0.200 4.200 6 C 0.029 3.971 7 H 0.101 0.899 8 C -0.236 4.236 9 N -0.270 5.270 10 C 0.292 3.708 11 O -0.423 6.423 12 C 0.275 3.725 13 O -0.413 6.413 14 N -0.336 5.336 15 C 0.023 3.977 16 C 0.050 3.950 17 C -0.182 4.182 18 C -0.181 4.181 19 C -0.562 4.562 20 H 0.070 0.930 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.776 3.224 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.053 4.053 28 C -0.225 4.225 29 C -0.215 4.215 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.147 0.853 52 H 0.121 0.879 53 H 0.118 0.882 54 H 0.137 0.863 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.700 -15.031 15.218 27.137 hybrid contribution 1.042 0.988 -0.959 1.727 sum -15.657 -14.043 14.260 25.411 Atomic orbital electron populations 1.21801 0.94856 1.02111 1.02132 1.21592 0.96705 0.94384 1.02735 1.21815 0.92711 0.98227 0.99460 0.87992 1.21784 1.01730 0.99392 0.97134 1.21483 0.95254 0.80155 1.00181 0.89894 1.22718 1.01885 1.02861 0.96119 1.47346 1.44399 1.11604 1.23649 1.20132 0.80251 0.87701 0.82739 1.90726 1.61339 1.53630 1.36642 1.20298 0.80628 0.88063 0.83479 1.90661 1.59757 1.55559 1.35313 1.46090 1.49937 1.17692 1.19866 1.21514 0.95884 0.80722 0.99560 1.18375 0.92057 0.94868 0.89666 1.21705 0.99176 0.95729 1.01548 1.21703 0.97664 0.96890 1.01853 1.21262 1.32365 0.99223 1.03394 0.93006 1.25512 0.96439 1.00212 0.95271 1.69938 1.40433 1.36325 1.07371 0.85644 0.78034 0.80864 0.77879 1.19582 1.20910 1.20857 1.22150 1.05703 0.93007 0.84397 1.23569 0.97598 1.04161 0.97188 1.24085 0.93049 1.04952 0.99405 0.93065 0.92066 0.91867 0.89979 0.92631 0.90960 0.94825 0.94200 0.93160 0.88773 0.88948 0.75217 0.92720 0.92897 0.95391 0.91756 0.95790 0.95710 0.91757 0.95406 0.93054 0.85339 0.87880 0.88163 0.86348 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.12 -1.33 5.25 30.60 0.16 -1.17 16 3 C -0.10 -1.55 1.69 -10.79 -0.02 -1.57 16 4 H 0.10 1.26 4.65 -2.39 -0.01 1.25 16 5 C -0.14 -2.78 8.75 71.98 0.63 -2.15 16 6 C 0.13 2.52 2.11 44.99 0.10 2.61 16 7 H 0.08 1.98 6.93 -2.39 -0.02 1.96 16 8 C -0.18 -2.46 7.31 71.98 0.53 -1.93 16 9 N -0.54 -13.31 1.80 -775.58 -1.40 -14.70 16 10 C 0.51 16.36 7.72 87.27 0.67 17.03 16 11 O -0.55 -19.55 15.84 -3.26 -0.05 -19.60 16 12 C 0.49 17.70 7.77 87.27 0.68 18.38 16 13 O -0.53 -19.95 13.35 -3.24 -0.04 -20.00 16 14 N -0.68 -25.88 4.95 -464.42 -2.30 -28.18 16 15 C 0.15 6.18 4.50 86.38 0.39 6.57 16 16 C 0.05 2.40 0.50 -52.92 -0.03 2.38 16 17 C -0.12 -5.77 8.08 71.98 0.58 -5.19 16 18 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 19 C -0.52 -27.50 8.01 25.60 0.21 -27.29 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 21 C 0.03 1.33 5.15 84.65 0.44 1.77 16 22 N -0.90 -48.83 9.35 21.45 0.20 -48.63 16 23 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.05 1.13 4.87 44.99 0.22 1.35 16 28 C -0.19 -3.35 9.63 30.62 0.30 -3.05 16 29 C -0.18 -2.43 8.12 30.62 0.25 -2.19 16 30 H 0.05 0.57 6.56 -2.39 -0.02 0.55 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.69 6.42 -2.39 -0.02 0.67 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.16 6.56 -2.39 -0.02 1.14 16 36 H 0.03 0.78 7.50 -2.39 -0.02 0.77 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.84 7.64 -2.39 -0.02 0.82 16 39 H 0.09 1.03 3.76 -2.39 -0.01 1.02 16 40 H 0.09 0.90 6.72 -2.39 -0.02 0.88 16 41 H 0.41 15.41 5.65 -92.71 -0.52 14.88 16 42 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 45 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 46 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 49 H 0.03 1.14 6.86 -2.38 -0.02 1.12 16 50 H 0.26 13.52 8.31 -92.70 -0.77 12.75 16 51 H 0.13 3.48 6.01 -2.39 -0.01 3.46 16 52 H 0.10 1.77 5.97 -2.39 -0.01 1.76 16 53 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 55 H 0.13 1.40 3.17 -2.39 -0.01 1.39 16 Total: -1.00 -59.72 404.25 5.18 -54.54 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.38 Total: 32.39 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 6.37 Total: -0.36 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.50 Total: -91.51 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.09 Total: -39.60 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -59.72 5.18 -54.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422491008.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.208 kcal (2) G-P(sol) polarization free energy of solvation -59.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds