Wall clock time and date at job start Tue Mar 31 2020 21:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 H 1.09006 * 110.05518 * 305.14786 * 3 2 1 5 5 C 1.54262 * 110.03476 * 66.56521 * 3 2 1 6 6 C 1.54891 * 104.19796 * 142.89487 * 5 3 2 7 7 C 1.54881 * 102.74901 * 322.05925 * 6 5 3 8 8 C 1.53871 * 110.03468 * 183.73221 * 3 2 1 9 9 H 1.09005 * 110.03704 * 121.37812 * 8 3 2 10 10 C 1.50705 * 110.03187 * 359.97438 * 8 3 2 11 11 O 1.21281 * 119.99797 * 288.61226 * 10 8 3 12 12 N 1.34773 * 119.99952 * 108.61307 * 10 8 3 13 13 C 1.46497 * 120.00049 * 355.54862 * 12 10 8 14 14 C 1.50700 * 109.46796 * 275.67257 * 13 12 10 15 15 H 1.07999 * 120.00324 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99906 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99685 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99997 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47356 * 89.99681 * 18 16 14 20 20 H 1.48504 * 109.46899 * 209.99728 * 18 16 14 21 21 H 1.48499 * 109.47037 * 329.99412 * 18 16 14 22 22 C 1.46506 * 119.99756 * 175.54868 * 12 10 8 23 23 C 1.52994 * 109.47304 * 89.99936 * 22 12 10 24 24 N 1.46898 * 109.47060 * 180.02562 * 23 22 12 25 25 C 1.47018 * 110.99734 * 293.63119 * 24 23 22 26 26 C 1.53106 * 109.25226 * 177.60894 * 25 24 23 27 27 O 1.43010 * 109.25767 * 56.85477 * 26 25 24 28 28 C 1.43011 * 113.73761 * 301.32424 * 27 26 25 29 29 C 1.47017 * 111.00119 * 170.00047 * 24 23 22 30 30 H 1.08997 * 109.47590 * 60.00319 * 1 2 3 31 31 H 1.09007 * 109.46696 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47509 * 299.99746 * 1 2 3 33 33 H 1.09003 * 109.47637 * 239.99789 * 2 1 3 34 34 H 1.09004 * 109.47405 * 119.99376 * 2 1 3 35 35 H 1.09001 * 110.48504 * 261.57303 * 5 3 2 36 36 H 1.09002 * 110.49022 * 24.08368 * 5 3 2 37 37 H 1.09000 * 110.75666 * 80.37491 * 6 5 3 38 38 H 1.09003 * 110.75383 * 203.74064 * 6 5 3 39 39 H 1.09007 * 110.48546 * 279.26295 * 7 6 5 40 40 H 1.08997 * 110.48829 * 156.62087 * 7 6 5 41 41 H 1.08991 * 109.47229 * 35.67436 * 13 12 10 42 42 H 1.09000 * 109.47060 * 155.67833 * 13 12 10 43 43 H 0.97000 * 119.99816 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47071 * 329.99704 * 22 12 10 45 45 H 1.09005 * 109.46768 * 210.00048 * 22 12 10 46 46 H 1.09001 * 109.47245 * 59.99875 * 23 22 12 47 47 H 1.08999 * 109.46900 * 299.99677 * 23 22 12 48 48 H 1.08994 * 109.50634 * 297.54169 * 25 24 23 49 49 H 1.09000 * 109.50635 * 57.68111 * 25 24 23 50 50 H 1.08991 * 109.50748 * 296.91369 * 26 25 24 51 51 H 1.09005 * 109.53757 * 176.80951 * 26 25 24 52 52 H 1.08999 * 109.50725 * 298.73500 * 28 27 26 53 53 H 1.09005 * 109.54573 * 178.63171 * 28 27 26 54 54 H 1.09004 * 109.50560 * 302.32558 * 29 24 23 55 55 H 1.09008 * 109.50612 * 62.41144 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6087 1.9914 -0.8373 5 6 1.6726 2.1329 1.3297 6 6 2.8947 3.0322 1.6410 7 6 4.0880 2.1583 1.1818 8 6 3.5757 1.4587 -0.0941 9 1 3.8899 2.0146 -0.9775 10 6 4.1039 0.0486 -0.1566 11 8 4.0643 -0.6580 0.8283 12 7 4.6204 -0.4271 -1.3070 13 6 4.5798 0.3909 -2.5216 14 6 3.2456 0.2165 -3.2003 15 1 2.5021 -0.4378 -2.7696 16 6 2.9741 0.8924 -4.3710 17 7 3.8794 1.6895 -4.8951 18 14 1.3201 0.6769 -5.2119 19 1 0.3667 1.6918 -4.6963 20 1 1.4835 0.8508 -6.6776 21 1 0.7952 -0.6835 -4.9303 22 6 5.2223 -1.7623 -1.3427 23 6 4.1506 -2.7957 -1.6952 24 7 4.7541 -4.1345 -1.7304 25 6 5.7178 -4.2491 -2.8348 26 6 6.3650 -5.6362 -2.7982 27 8 5.3437 -6.6351 -2.8650 28 6 4.3882 -6.5533 -1.8041 29 6 3.7210 -5.1757 -1.8304 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 0.7741 2.7382 1.2098 36 1 1.5306 1.3928 2.1173 37 1 2.8497 3.9574 1.0665 38 1 2.9578 3.2420 2.7088 39 1 4.3384 1.4224 1.9460 40 1 4.9523 2.7821 0.9539 41 1 4.7194 1.4393 -2.2584 42 1 5.3751 0.0770 -3.1977 43 1 3.6883 2.1653 -5.7185 44 1 5.6454 -1.9964 -0.3658 45 1 6.0108 -1.7853 -2.0951 46 1 3.7276 -2.5616 -2.6722 47 1 3.3623 -2.7726 -0.9429 48 1 5.2006 -4.1137 -3.7847 49 1 6.4878 -3.4853 -2.7267 50 1 6.9268 -5.7513 -1.8714 51 1 7.0384 -5.7467 -3.6482 52 1 4.8926 -6.6952 -0.8483 53 1 3.6314 -7.3268 -1.9345 54 1 3.0334 -5.0881 -0.9892 55 1 3.1714 -5.0546 -2.7640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448837592.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:08 Heat of formation + Delta-G solvation = -108.331282 kcal Electronic energy + Delta-G solvation = -32382.914246 eV Core-core repulsion = 28418.398964 eV Total energy + Delta-G solvation = -3964.515282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.55666 -40.51989 -38.58775 -37.23115 -36.33362 -34.51013 -34.01589 -32.25973 -31.59141 -29.85534 -29.06136 -28.44189 -27.04532 -25.09928 -24.87759 -23.87256 -23.45285 -21.67173 -21.36642 -21.18514 -19.19247 -18.64647 -18.07548 -17.57958 -17.19668 -16.95557 -16.55348 -16.36214 -16.19391 -16.00356 -15.87520 -15.43288 -15.32214 -15.24828 -14.63418 -14.52564 -14.34571 -14.11528 -13.95981 -13.61989 -13.43516 -13.26834 -13.15648 -12.98775 -12.80569 -12.73244 -12.50759 -12.41012 -12.33899 -12.18748 -12.04812 -11.88157 -11.84981 -11.72826 -11.62293 -11.46205 -11.41872 -11.31810 -11.16389 -10.72149 -10.65696 -10.34703 -9.54710 -9.39421 -8.20330 -6.31088 1.34682 1.38198 1.44988 1.80941 2.22294 2.38701 2.82873 2.97332 3.10906 3.60011 3.74177 3.78258 3.83757 3.89747 3.99476 4.06370 4.16980 4.19288 4.30576 4.32778 4.39452 4.40307 4.45681 4.46790 4.56098 4.59657 4.68342 4.69918 4.75112 4.78278 4.79888 4.83300 4.84634 4.87541 4.88663 4.96680 4.98995 5.01752 5.05834 5.13642 5.19546 5.24221 5.29520 5.34691 5.45030 5.50524 5.60629 5.69692 5.78478 5.90110 5.93900 6.08068 6.14430 6.58961 6.85016 7.34978 7.46927 8.85691 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009110 B = 0.004398 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.698708 B = 6364.645349 C = 7733.921183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C -0.064 4.064 4 H 0.065 0.935 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.113 4.113 9 H 0.083 0.917 10 C 0.533 3.467 11 O -0.585 6.585 12 N -0.603 5.603 13 C 0.254 3.746 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.027 3.973 17 N -0.919 5.919 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.277 1.277 22 C 0.132 3.868 23 C 0.064 3.936 24 N -0.535 5.535 25 C 0.012 3.988 26 C 0.069 3.931 27 O -0.403 6.403 28 C 0.069 3.931 29 C 0.016 3.984 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.116 0.884 52 H 0.067 0.933 53 H 0.118 0.882 54 H 0.089 0.911 55 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -5.810 8.556 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.134 4.134 9 H 0.101 0.899 10 C 0.323 3.677 11 O -0.468 6.468 12 N -0.333 5.333 13 C 0.133 3.867 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.173 4.173 17 N -0.559 5.559 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.202 1.202 22 C 0.009 3.991 23 C -0.065 4.065 24 N -0.260 5.260 25 C -0.116 4.116 26 C -0.008 4.008 27 O -0.322 6.322 28 C -0.007 4.007 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.111 0.889 50 H 0.087 0.913 51 H 0.134 0.866 52 H 0.086 0.914 53 H 0.136 0.864 54 H 0.107 0.893 55 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.127 -6.273 9.171 11.111 hybrid contribution -1.205 0.401 -1.830 2.228 sum -1.078 -5.872 7.340 9.461 Atomic orbital electron populations 1.21716 0.94744 1.01454 1.01997 1.21769 0.96829 0.96425 1.00876 1.21518 0.91696 0.96215 0.98921 0.91665 1.22427 0.98623 0.98363 0.95404 1.22450 0.93122 0.97668 1.01820 1.22338 0.98991 0.98438 0.94918 1.22091 0.97603 0.92735 1.00986 0.89886 1.20612 0.75658 0.89685 0.81714 1.90544 1.58609 1.60892 1.36712 1.48235 1.57819 1.16477 1.10765 1.19112 0.96350 0.90311 0.80911 1.21554 1.00391 1.26577 1.07676 0.92892 1.25465 0.99382 0.94896 0.97532 1.69991 1.35291 1.29455 1.21125 0.85846 0.81249 0.78504 0.77915 1.19643 1.20948 1.20157 1.21185 0.94663 0.81370 1.01901 1.22186 0.96939 0.88098 0.99299 1.62241 1.16751 1.02743 1.44287 1.22926 0.96648 1.00206 0.91864 1.22762 0.89602 0.84727 1.03701 1.87937 1.40377 1.53545 1.50353 1.22747 0.91941 0.95169 0.90867 1.22853 0.94302 0.93020 1.01099 0.93472 0.93016 0.90984 0.94360 0.92105 0.90157 0.91543 0.90667 0.89592 0.91706 0.91003 0.95256 0.96381 0.92522 0.90665 0.90627 0.95827 0.92463 0.95456 0.88917 0.91304 0.86575 0.91437 0.86438 0.89281 0.95355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.75 71.98 0.70 -3.51 16 2 C -0.12 -4.37 4.07 30.59 0.12 -4.24 16 3 C -0.06 -2.19 2.94 -10.07 -0.03 -2.22 16 4 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 5 C -0.11 -2.92 5.47 31.67 0.17 -2.75 16 6 C -0.11 -2.75 6.91 31.88 0.22 -2.53 16 7 C -0.11 -3.29 6.32 31.67 0.20 -3.09 16 8 C -0.11 -4.15 2.92 -10.81 -0.03 -4.18 16 9 H 0.08 3.37 5.52 -2.38 -0.01 3.36 16 10 C 0.53 21.77 4.56 87.66 0.40 22.17 16 11 O -0.59 -25.50 14.00 -3.03 -0.04 -25.54 16 12 N -0.60 -25.12 2.47 -826.16 -2.04 -27.16 16 13 C 0.25 11.89 4.94 85.63 0.42 12.31 16 14 C -0.52 -26.32 9.14 25.60 0.23 -26.09 16 15 H 0.05 2.75 6.25 -2.91 -0.02 2.73 16 16 C 0.03 1.42 5.46 84.66 0.46 1.88 16 17 N -0.92 -49.83 13.29 21.45 0.28 -49.54 16 18 Si 0.94 41.80 29.54 68.60 2.03 43.82 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.13 4.94 5.35 86.38 0.46 5.41 16 23 C 0.06 2.34 5.28 86.30 0.46 2.80 16 24 N -0.53 -16.37 4.73 -895.20 -4.23 -20.60 16 25 C 0.01 0.32 5.44 86.32 0.47 0.79 16 26 C 0.07 1.55 7.01 72.02 0.50 2.06 16 27 O -0.40 -10.29 10.83 -148.98 -1.61 -11.90 16 28 C 0.07 1.53 7.01 72.01 0.50 2.04 16 29 C 0.02 0.42 5.64 86.31 0.49 0.91 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.07 1.80 7.46 -2.39 -0.02 1.78 16 33 H 0.04 1.62 5.68 -2.39 -0.01 1.61 16 34 H 0.06 2.32 6.41 -2.38 -0.02 2.31 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.76 7.78 -2.39 -0.02 1.74 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 2.10 7.20 -2.38 -0.02 2.09 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.45 5.91 -2.39 -0.01 1.43 16 42 H 0.02 0.90 7.83 -2.39 -0.02 0.88 16 43 H 0.27 13.79 8.31 -92.71 -0.77 13.01 16 44 H 0.07 2.83 7.49 -2.39 -0.02 2.82 16 45 H 0.08 2.66 6.23 -2.38 -0.01 2.64 16 46 H 0.02 0.99 7.98 -2.39 -0.02 0.97 16 47 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 48 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.09 2.46 6.38 -2.39 -0.02 2.44 16 50 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 51 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 52 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.12 2.03 8.14 -2.38 -0.02 2.02 16 54 H 0.09 2.29 8.09 -2.38 -0.02 2.27 16 55 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -59.36 412.75 0.99 -58.37 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.85 Total: 30.79 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.76 Total: 1.77 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.99 Total: -97.30 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.66 Total: -37.44 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -59.36 0.99 -58.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448837592.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.961 kcal (2) G-P(sol) polarization free energy of solvation -59.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds