Wall clock time and date at job start Tue Mar 31 2020 23:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47408 * 2 1 4 4 H 1.08994 * 109.46664 * 305.00601 * 3 2 1 5 5 C 1.53003 * 109.46815 * 65.00138 * 3 2 1 6 6 C 1.50697 * 109.47150 * 184.99920 * 3 2 1 7 7 O 1.21283 * 120.00044 * 344.77785 * 6 3 2 8 8 N 1.34780 * 119.99909 * 164.77548 * 6 3 2 9 9 C 1.46921 * 120.62972 * 174.71819 * 8 6 3 10 10 C 1.53193 * 108.77762 * 126.11977 * 9 8 6 11 11 C 1.53042 * 109.30926 * 54.63134 * 10 9 8 12 12 C 1.53040 * 109.54051 * 298.63669 * 11 10 9 13 13 H 1.09001 * 109.49625 * 301.38688 * 12 11 10 14 14 C 1.50702 * 109.49788 * 181.31825 * 12 11 10 15 15 O 1.21277 * 120.00166 * 240.00340 * 14 12 11 16 16 N 1.34772 * 119.99832 * 60.00150 * 14 12 11 17 17 C 1.46505 * 119.99811 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.46929 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47034 * 299.99763 * 18 17 16 20 20 C 1.52993 * 109.47489 * 59.99836 * 18 17 16 21 21 C 1.50696 * 109.47106 * 180.02562 * 18 17 16 22 22 H 1.08011 * 120.00046 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00289 * 179.97438 * 21 18 17 24 24 N 1.31513 * 119.99979 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 120.00057 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.47090 * 90.00379 * 25 23 21 27 27 H 1.48506 * 109.47099 * 209.99874 * 25 23 21 28 28 H 1.48494 * 109.47388 * 330.00081 * 25 23 21 29 29 C 1.46923 * 120.62994 * 354.44245 * 8 6 3 30 30 H 1.09004 * 109.46897 * 299.99764 * 1 2 3 31 31 H 1.08997 * 109.46815 * 59.99423 * 1 2 3 32 32 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46985 * 239.99903 * 2 1 3 34 34 H 1.08997 * 109.46815 * 120.00577 * 2 1 3 35 35 H 1.08998 * 109.47143 * 53.60382 * 5 3 2 36 36 H 1.08999 * 109.47173 * 173.60776 * 5 3 2 37 37 H 1.09006 * 109.47016 * 293.60621 * 5 3 2 38 38 H 1.09000 * 109.58570 * 245.90759 * 9 8 6 39 39 H 1.09003 * 109.58896 * 6.32707 * 9 8 6 40 40 H 1.08996 * 109.50067 * 174.58733 * 10 9 8 41 41 H 1.09003 * 109.49505 * 294.65576 * 10 9 8 42 42 H 1.08998 * 109.46004 * 58.66153 * 11 10 9 43 43 H 1.09002 * 109.45588 * 178.61767 * 11 10 9 44 44 H 0.97001 * 120.00275 * 359.97438 * 16 14 12 45 45 H 1.08994 * 109.46836 * 299.99625 * 17 16 14 46 46 H 1.08998 * 109.47240 * 59.99899 * 17 16 14 47 47 H 1.09003 * 109.47541 * 60.00070 * 19 18 17 48 48 H 1.08999 * 109.47371 * 180.02562 * 19 18 17 49 49 H 1.08998 * 109.47176 * 300.00177 * 19 18 17 50 50 H 1.09004 * 109.47208 * 59.99945 * 20 18 17 51 51 H 1.08997 * 109.47623 * 180.02562 * 20 18 17 52 52 H 1.09004 * 109.47231 * 300.00284 * 20 18 17 53 53 H 0.96997 * 120.00583 * 180.02562 * 24 23 21 54 54 H 1.09002 * 109.58595 * 353.66723 * 29 8 6 55 55 H 1.08996 * 109.58837 * 114.08854 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6354 2.1265 1.3074 6 6 3.5420 1.4442 -0.1238 7 8 4.1678 0.4239 0.0717 8 7 4.1898 2.5797 -0.4518 9 6 5.6582 2.6270 -0.4638 10 6 6.1240 3.1378 -1.8309 11 6 5.4494 4.4793 -2.1265 12 6 3.9315 4.2897 -2.1733 13 1 3.6798 3.5575 -2.9405 14 6 3.2700 5.6047 -2.4964 15 8 2.4816 6.0948 -1.7161 16 7 3.5546 6.2359 -3.6527 17 6 2.9120 7.5145 -3.9666 18 6 3.4049 8.0127 -5.3267 19 6 4.9224 8.2022 -5.2810 20 6 3.0514 6.9860 -6.4046 21 6 2.7443 9.3282 -5.6493 22 1 2.0428 9.7651 -4.9540 23 6 3.0355 9.9741 -6.8321 24 7 3.8902 9.4424 -7.6786 25 14 2.2162 11.6044 -7.2323 26 1 3.0473 12.7179 -6.7082 27 1 2.0778 11.7406 -8.7046 28 1 0.8723 11.6508 -6.6024 29 6 3.4410 3.7920 -0.8100 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.9734 1.5256 2.1516 36 1 2.0936 3.1142 1.3578 37 1 0.5506 2.2270 1.3442 38 1 6.0084 3.3019 0.3172 39 1 6.0575 1.6274 -0.2917 40 1 7.2060 3.2690 -1.8209 41 1 5.8521 2.4158 -2.6009 42 1 5.7022 5.1935 -1.3428 43 1 5.7979 4.8569 -3.0878 44 1 4.1855 5.8441 -4.2767 45 1 1.8310 7.3793 -3.9995 46 1 3.1635 8.2458 -3.1984 47 1 5.4006 7.2510 -5.0475 48 1 5.2735 8.5575 -6.2498 49 1 5.1742 8.9337 -4.5132 50 1 1.9702 6.8509 -6.4371 51 1 3.4029 7.3406 -7.3734 52 1 3.5295 6.0347 -6.1710 53 1 4.0954 9.8969 -8.5105 54 1 2.3772 3.5610 -0.8665 55 1 3.6103 4.5619 -0.0573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:49 Heat of formation + Delta-G solvation = -119.184122 kcal Electronic energy + Delta-G solvation = -30950.893276 eV Core-core repulsion = 26985.907379 eV Total energy + Delta-G solvation = -3964.985897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.75548 -40.70634 -38.54935 -37.85800 -36.45911 -35.06087 -34.04757 -32.79574 -32.19620 -30.50126 -27.55631 -27.54410 -27.03466 -26.94084 -25.67423 -24.69634 -23.13693 -21.59440 -21.00739 -20.58365 -19.82867 -18.59818 -18.03658 -17.54813 -17.26984 -16.60236 -16.55578 -16.39863 -16.22886 -15.68210 -15.37772 -15.22994 -14.89082 -14.83993 -14.66130 -14.35809 -14.05708 -14.03973 -13.91532 -13.62486 -13.47228 -13.16921 -13.09514 -13.01429 -12.68333 -12.64541 -12.60842 -12.57935 -12.46592 -12.23917 -12.15229 -12.11037 -11.94777 -11.75863 -11.66966 -11.57508 -11.46353 -11.24040 -10.76670 -10.67685 -10.63046 -10.38694 -9.90683 -9.71905 -8.01560 -6.16999 1.42636 1.46204 1.53074 1.53939 1.68455 1.85084 2.37855 2.52613 3.22388 3.39015 3.59331 3.72232 3.78552 3.80899 3.98026 4.04782 4.15081 4.21420 4.29960 4.46182 4.47652 4.50560 4.54199 4.58110 4.60625 4.70519 4.74258 4.78140 4.82214 4.84782 4.95819 4.98665 4.99049 5.02572 5.06857 5.09341 5.11601 5.12774 5.18511 5.21778 5.31372 5.34208 5.39473 5.44361 5.51626 5.61733 5.68653 5.69265 6.17564 6.23999 6.30159 6.45007 6.68178 6.87918 7.09405 7.32416 7.50970 8.97091 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.002359 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.070325 B =11864.284223 C =12645.191425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.113 4.113 4 H 0.105 0.895 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.579 6.579 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.122 4.122 11 C -0.110 4.110 12 C -0.114 4.114 13 H 0.114 0.886 14 C 0.515 3.485 15 O -0.584 6.584 16 N -0.708 5.708 17 C 0.148 3.852 18 C 0.052 3.948 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.527 4.527 22 H 0.044 0.956 23 C 0.029 3.971 24 N -0.899 5.899 25 Si 0.942 3.058 26 H -0.280 1.280 27 H -0.284 1.284 28 H -0.276 1.276 29 C 0.131 3.869 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.408 0.592 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.061 0.939 52 H 0.037 0.963 53 H 0.259 0.741 54 H 0.098 0.902 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 -16.312 13.072 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.134 4.134 4 H 0.123 0.877 5 C -0.198 4.198 6 C 0.308 3.692 7 O -0.459 6.459 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.160 4.160 11 C -0.148 4.148 12 C -0.136 4.136 13 H 0.132 0.868 14 C 0.301 3.699 15 O -0.465 6.465 16 N -0.359 5.359 17 C 0.025 3.975 18 C 0.051 3.949 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.566 4.566 22 H 0.063 0.937 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.769 3.231 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.201 1.201 29 C 0.008 3.992 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.245 0.755 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.079 0.921 52 H 0.056 0.944 53 H 0.069 0.931 54 H 0.116 0.884 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.036 -16.445 13.534 21.323 hybrid contribution -0.144 1.143 -0.830 1.420 sum 0.892 -15.302 12.704 19.908 Atomic orbital electron populations 1.21818 0.93799 1.02492 1.02647 1.21314 0.96792 0.93641 1.02181 1.21455 0.90180 0.99844 1.01896 0.87720 1.21801 1.03368 1.00058 0.94568 1.21154 0.91166 0.81999 0.74889 1.90649 1.69931 1.32978 1.52332 1.48186 1.07462 1.11103 1.67208 1.21764 0.78923 1.02777 0.98467 1.21847 1.01751 0.95985 0.96382 1.21551 0.90967 0.98551 1.03734 1.21644 0.97896 0.94021 1.00005 0.86850 1.20874 0.81434 0.86679 0.80877 1.90668 1.37521 1.68715 1.49627 1.46136 1.45946 1.23032 1.20775 1.21250 0.95498 0.83347 0.97444 1.18341 0.93440 0.93631 0.89484 1.21674 0.96957 0.97994 1.01265 1.21678 0.97998 0.96299 1.01963 1.21291 1.25422 1.05973 1.03904 0.93725 1.25430 0.95574 0.99966 0.96157 1.69902 1.34459 1.39259 1.10188 0.85804 0.79023 0.81137 0.77108 1.20562 1.20992 1.20053 1.21516 0.96789 0.86191 0.94678 0.91496 0.92260 0.91916 0.92765 0.92163 0.92310 0.92144 0.89495 0.90317 0.89910 0.88180 0.91348 0.91071 0.89932 0.75487 0.94277 0.94206 0.94251 0.92094 0.96270 0.96304 0.92063 0.94380 0.93092 0.88391 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.22 16 2 C -0.10 -1.73 4.73 30.60 0.14 -1.59 16 3 C -0.11 -1.95 1.87 -11.54 -0.02 -1.97 16 4 H 0.10 1.63 6.58 -2.39 -0.02 1.62 16 5 C -0.14 -2.08 8.54 71.98 0.61 -1.46 16 6 C 0.52 11.58 6.89 87.66 0.60 12.18 16 7 O -0.58 -16.83 15.51 -3.04 -0.05 -16.87 16 8 N -0.61 -11.74 2.97 -818.92 -2.43 -14.18 16 9 C 0.10 1.74 6.44 86.36 0.56 2.30 16 10 C -0.12 -1.70 6.08 30.67 0.19 -1.51 16 11 C -0.11 -1.80 5.07 30.62 0.16 -1.65 16 12 C -0.11 -2.24 2.68 -11.46 -0.03 -2.28 16 13 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 14 C 0.51 14.72 7.16 87.66 0.63 15.34 16 15 O -0.58 -21.01 15.92 -3.02 -0.05 -21.05 16 16 N -0.71 -21.60 4.85 -463.06 -2.24 -23.84 16 17 C 0.15 5.87 4.50 86.38 0.39 6.26 16 18 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 19 C -0.12 -5.09 8.08 71.98 0.58 -4.51 16 20 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 21 C -0.53 -27.01 8.01 25.60 0.21 -26.81 16 22 H 0.04 2.34 7.74 -2.90 -0.02 2.31 16 23 C 0.03 1.46 5.15 84.65 0.44 1.90 16 24 N -0.90 -46.92 9.35 21.45 0.20 -46.72 16 25 Si 0.94 41.73 29.54 68.60 2.03 43.76 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 29 C 0.13 2.53 4.01 86.36 0.35 2.88 16 30 H 0.07 0.74 6.71 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.14 8.09 -2.39 -0.02 1.13 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.93 7.07 -2.39 -0.02 0.92 16 37 H 0.09 1.02 6.89 -2.38 -0.02 1.01 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.62 7.00 -2.39 -0.02 1.60 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.29 7.53 -2.39 -0.02 1.27 16 44 H 0.41 10.81 5.56 -92.71 -0.52 10.29 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 48 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 52 H 0.04 1.32 6.86 -2.38 -0.02 1.31 16 53 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 54 H 0.10 1.83 5.32 -2.39 -0.01 1.82 16 55 H 0.08 1.60 7.96 -2.39 -0.02 1.58 16 Total: -1.00 -62.35 413.38 3.85 -58.50 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.35 Total: 24.88 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 6.05 Total: -4.47 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -4.48 Total: -84.74 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.10 Total: -37.93 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.35 3.85 -58.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.682 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds