Wall clock time and date at job start Tue Mar 31 2020 23:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46841 * 2 1 4 4 H 1.09002 * 109.47645 * 55.00265 * 3 2 1 5 5 C 1.52998 * 109.47304 * 294.99827 * 3 2 1 6 6 C 1.50705 * 109.46708 * 175.00097 * 3 2 1 7 7 O 1.21282 * 120.00332 * 23.96983 * 6 3 2 8 8 N 1.34774 * 119.99855 * 203.97107 * 6 3 2 9 9 C 1.46930 * 120.63243 * 175.31856 * 8 6 3 10 10 C 1.53190 * 108.77815 * 233.63050 * 9 8 6 11 11 C 1.53046 * 109.33589 * 305.37943 * 10 9 8 12 12 C 1.53043 * 109.54138 * 61.31495 * 11 10 9 13 13 H 1.09004 * 109.49432 * 58.65157 * 12 11 10 14 14 C 1.50693 * 109.49777 * 178.71573 * 12 11 10 15 15 O 1.21283 * 120.00024 * 119.93680 * 14 12 11 16 16 N 1.34778 * 120.00237 * 299.93548 * 14 12 11 17 17 C 1.46495 * 120.00359 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.47462 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.46874 * 299.99797 * 18 17 16 20 20 C 1.53000 * 109.46930 * 59.99483 * 18 17 16 21 21 C 1.50702 * 109.47233 * 179.97438 * 18 17 16 22 22 H 1.07999 * 120.00122 * 0.02562 * 21 18 17 23 23 C 1.37873 * 119.99899 * 179.97438 * 21 18 17 24 24 N 1.31519 * 120.00421 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 120.00168 * 180.02562 * 23 21 18 26 26 H 1.48494 * 109.46833 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47111 * 119.99813 * 25 23 21 28 28 H 1.48499 * 109.47094 * 239.99906 * 25 23 21 29 29 C 1.46931 * 120.63161 * 355.33433 * 8 6 3 30 30 H 1.08995 * 109.47115 * 59.99782 * 1 2 3 31 31 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46870 * 300.00083 * 1 2 3 33 33 H 1.08998 * 109.46711 * 239.99622 * 2 1 3 34 34 H 1.09000 * 109.46706 * 120.00053 * 2 1 3 35 35 H 1.09002 * 109.47259 * 306.26857 * 5 3 2 36 36 H 1.09000 * 109.47114 * 66.26911 * 5 3 2 37 37 H 1.09005 * 109.47266 * 186.27132 * 5 3 2 38 38 H 1.09000 * 109.58445 * 353.41620 * 9 8 6 39 39 H 1.08999 * 109.59094 * 113.69533 * 9 8 6 40 40 H 1.09003 * 109.49635 * 65.30443 * 10 9 8 41 41 H 1.08992 * 109.49910 * 185.37934 * 10 9 8 42 42 H 1.08999 * 109.43102 * 301.31148 * 11 10 9 43 43 H 1.08996 * 109.48322 * 181.34991 * 11 10 9 44 44 H 0.97000 * 119.99472 * 0.02562 * 16 14 12 45 45 H 1.09005 * 109.47020 * 300.00007 * 17 16 14 46 46 H 1.08994 * 109.47404 * 59.99368 * 17 16 14 47 47 H 1.08996 * 109.46853 * 59.99997 * 19 18 17 48 48 H 1.09000 * 109.46653 * 179.97438 * 19 18 17 49 49 H 1.08998 * 109.47060 * 299.99593 * 19 18 17 50 50 H 1.08999 * 109.47219 * 60.01087 * 20 18 17 51 51 H 1.09007 * 109.46719 * 180.02562 * 20 18 17 52 52 H 1.08993 * 109.47407 * 300.00009 * 20 18 17 53 53 H 0.96992 * 120.00637 * 179.97438 * 24 23 21 54 54 H 1.08994 * 109.58247 * 6.58813 * 29 8 6 55 55 H 1.09000 * 109.70621 * 246.22682 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1802 0.4733 -0.2236 8 7 4.1758 2.5249 0.6206 9 6 5.6280 2.5044 0.8431 10 6 5.9104 2.9083 2.2936 11 6 5.2494 4.2583 2.5816 12 6 3.7348 4.1358 2.3997 13 1 3.3484 3.3699 3.0722 14 6 3.0820 5.4571 2.7140 15 8 2.4339 6.0307 1.8644 16 7 3.2183 6.0015 3.9394 17 6 2.5832 7.2857 4.2452 18 6 2.8921 7.6758 5.6920 19 6 2.3503 6.6012 6.6368 20 6 4.4061 7.7992 5.8747 21 6 2.2393 8.9972 6.0064 22 1 1.6614 9.5076 5.2500 23 6 2.3788 9.5542 7.2599 24 7 3.0812 8.9320 8.1815 25 14 1.5691 11.1918 7.6498 26 1 0.8410 11.6815 6.4519 27 1 0.6137 11.0165 8.7731 28 1 2.6094 12.1792 8.0343 29 6 3.4278 3.7458 0.9503 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9753 1.5269 -2.1516 36 1 0.5503 2.2249 -1.3452 37 1 2.0917 3.1152 -1.3566 38 1 6.0113 1.5002 0.6622 39 1 6.1116 3.2076 0.1650 40 1 5.5039 2.1538 2.9670 41 1 6.9866 2.9898 2.4456 42 1 5.6386 5.0071 1.8918 43 1 5.4689 4.5594 3.6059 44 1 3.7369 5.5429 4.6188 45 1 2.9695 8.0515 3.5725 46 1 1.5047 7.1980 4.1145 47 1 2.8228 5.6457 6.4092 48 1 2.5708 6.8789 7.6675 49 1 1.2716 6.5133 6.5066 50 1 4.7922 8.5648 5.2018 51 1 4.6262 8.0767 6.9057 52 1 4.8786 6.8437 5.6473 53 1 3.1797 9.3240 9.0632 54 1 2.3594 3.5605 0.8403 55 1 3.7294 4.5531 0.2830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990947.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:52 Heat of formation + Delta-G solvation = -119.212853 kcal Electronic energy + Delta-G solvation = -30973.387035 eV Core-core repulsion = 27008.399893 eV Total energy + Delta-G solvation = -3964.987143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.75452 -40.70453 -38.55174 -37.85902 -36.45870 -35.05913 -34.03617 -32.79483 -32.19966 -30.51949 -27.55512 -27.54128 -27.05295 -26.95453 -25.66479 -24.69582 -23.14088 -21.58656 -20.98852 -20.58217 -19.84857 -18.62293 -18.05468 -17.55126 -17.24930 -16.60213 -16.55419 -16.39948 -16.17778 -15.63967 -15.43029 -15.25510 -14.89842 -14.85120 -14.67624 -14.34452 -14.06623 -14.03933 -13.92496 -13.63709 -13.41304 -13.17214 -13.10150 -13.02984 -12.68659 -12.65509 -12.60909 -12.55831 -12.49920 -12.23929 -12.14875 -12.10996 -11.95685 -11.75615 -11.67961 -11.57252 -11.46240 -11.23799 -10.76322 -10.66901 -10.62476 -10.38970 -9.90540 -9.72802 -8.01656 -6.16986 1.41369 1.46302 1.53694 1.54941 1.68727 1.84427 2.37578 2.52409 3.22327 3.39075 3.58382 3.72095 3.78254 3.81024 3.97798 4.04933 4.14908 4.21358 4.30222 4.46379 4.47283 4.50390 4.54280 4.57823 4.60495 4.69455 4.74550 4.77448 4.82230 4.84792 4.94989 4.97982 4.99193 5.02844 5.07130 5.09274 5.11625 5.13031 5.17579 5.22071 5.31408 5.33615 5.39749 5.44253 5.50760 5.62073 5.68982 5.69550 6.17862 6.24245 6.29658 6.45200 6.68536 6.88159 7.09111 7.32860 7.51074 8.97148 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.002379 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.161474 B =11765.907824 C =12520.185362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.113 4.113 4 H 0.104 0.896 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.579 6.579 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.121 4.121 11 C -0.110 4.110 12 C -0.113 4.113 13 H 0.116 0.884 14 C 0.514 3.486 15 O -0.585 6.585 16 N -0.708 5.708 17 C 0.148 3.852 18 C 0.052 3.948 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.526 4.526 22 H 0.044 0.956 23 C 0.028 3.972 24 N -0.899 5.899 25 Si 0.942 3.058 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.130 3.870 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.408 0.592 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.060 0.940 52 H 0.039 0.961 53 H 0.259 0.741 54 H 0.099 0.901 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 -15.976 -12.785 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.134 4.134 4 H 0.122 0.878 5 C -0.198 4.198 6 C 0.308 3.692 7 O -0.459 6.459 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.159 4.159 11 C -0.148 4.148 12 C -0.135 4.135 13 H 0.134 0.866 14 C 0.301 3.699 15 O -0.466 6.466 16 N -0.359 5.359 17 C 0.025 3.975 18 C 0.051 3.949 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.565 4.565 22 H 0.062 0.938 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.769 3.231 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.209 1.209 29 C 0.007 3.993 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.245 0.755 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.079 0.921 52 H 0.058 0.942 53 H 0.069 0.931 54 H 0.117 0.883 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.184 -16.039 -13.364 20.991 hybrid contribution -0.207 1.136 0.816 1.414 sum 1.977 -14.902 -12.548 19.582 Atomic orbital electron populations 1.21815 0.93763 1.02519 1.02655 1.21325 0.96879 0.93559 1.02208 1.21462 0.90151 0.99892 1.01865 0.87762 1.21799 1.03382 0.99985 0.94677 1.21151 0.91192 0.81293 0.75536 1.90649 1.69141 1.35346 1.50772 1.48206 1.08879 1.13665 1.63203 1.21754 0.79666 1.03039 0.97446 1.21848 1.02464 0.96267 0.95304 1.21553 0.91106 0.98619 1.03561 1.21646 0.98319 0.94282 0.99265 0.86602 1.20892 0.80088 0.87225 0.81692 1.90671 1.43303 1.64735 1.47899 1.46131 1.53165 1.22925 1.13642 1.21246 0.95494 0.83368 0.97441 1.18347 0.93652 0.93921 0.88992 1.21677 0.97663 0.96104 1.02484 1.21672 0.96457 0.97775 1.01988 1.21318 1.32109 1.05634 0.97427 0.93758 1.25427 0.95649 0.99795 0.96256 1.69908 1.40655 1.39050 1.04198 0.85752 0.78436 0.81005 0.77881 1.19973 1.20854 1.20860 1.21520 0.97665 0.86115 0.93996 0.91546 0.91874 0.92215 0.92114 0.92657 0.92338 0.89422 0.92281 0.89926 0.90617 0.91098 0.88146 0.91217 0.89837 0.75464 0.94280 0.94257 0.94340 0.92062 0.96299 0.96275 0.92108 0.94222 0.93102 0.88288 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 71.98 0.70 -1.22 16 2 C -0.10 -1.72 4.83 30.59 0.15 -1.58 16 3 C -0.11 -1.96 1.86 -11.54 -0.02 -1.98 16 4 H 0.10 1.61 6.53 -2.39 -0.02 1.60 16 5 C -0.14 -2.14 8.52 71.98 0.61 -1.53 16 6 C 0.52 11.62 6.81 87.66 0.60 12.21 16 7 O -0.58 -16.86 15.61 -3.04 -0.05 -16.91 16 8 N -0.61 -11.82 2.97 -818.88 -2.43 -14.25 16 9 C 0.10 1.76 6.42 86.36 0.55 2.31 16 10 C -0.12 -1.65 6.08 30.67 0.19 -1.46 16 11 C -0.11 -1.79 5.08 30.62 0.16 -1.63 16 12 C -0.11 -2.20 2.68 -11.46 -0.03 -2.23 16 13 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 14 C 0.51 14.64 7.16 87.65 0.63 15.27 16 15 O -0.59 -21.07 15.92 -3.04 -0.05 -21.11 16 16 N -0.71 -21.46 4.85 -463.08 -2.24 -23.70 16 17 C 0.15 5.85 4.50 86.38 0.39 6.24 16 18 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 19 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 20 C -0.12 -5.08 8.08 71.98 0.58 -4.50 16 21 C -0.53 -26.93 8.01 25.60 0.21 -26.72 16 22 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 23 C 0.03 1.46 5.15 84.65 0.44 1.90 16 24 N -0.90 -46.81 9.35 21.45 0.20 -46.61 16 25 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 C 0.13 2.53 4.39 86.36 0.38 2.91 16 30 H 0.07 0.74 6.71 -2.39 -0.02 0.73 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 1.16 8.04 -2.39 -0.02 1.14 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.05 6.88 -2.39 -0.02 1.04 16 37 H 0.06 0.94 7.34 -2.38 -0.02 0.92 16 38 H 0.08 1.62 7.03 -2.39 -0.02 1.60 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.27 7.53 -2.39 -0.02 1.26 16 44 H 0.41 10.70 5.57 -92.71 -0.52 10.18 16 45 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 48 H 0.06 2.92 6.07 -2.39 -0.01 2.90 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 2.89 6.07 -2.38 -0.01 2.87 16 52 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 53 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 54 H 0.10 1.86 5.14 -2.39 -0.01 1.84 16 55 H 0.08 1.61 7.95 -2.39 -0.02 1.59 16 Total: -1.00 -62.51 413.85 3.87 -58.64 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.35 Total: 24.53 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 6.07 Total: -4.32 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -4.48 Total: -84.56 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.10 Total: -38.03 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -62.51 3.87 -58.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990947.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.574 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds