Wall clock time and date at job start Tue Mar 31 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47234 * 2 1 4 4 H 1.09003 * 109.47204 * 57.91687 * 3 2 1 5 5 C 1.50698 * 109.46969 * 177.91643 * 3 2 1 6 6 O 1.21284 * 119.99695 * 114.48753 * 5 3 2 7 7 N 1.34772 * 120.00024 * 294.48065 * 5 3 2 8 8 C 1.46922 * 120.63377 * 356.68771 * 7 5 3 9 9 C 1.53188 * 108.78046 * 126.38757 * 8 7 5 10 10 C 1.53043 * 109.31263 * 54.63558 * 9 8 7 11 11 C 1.53048 * 109.53839 * 298.63887 * 10 9 8 12 12 H 1.08999 * 109.49181 * 301.38010 * 11 10 9 13 13 C 1.50697 * 109.49621 * 181.31422 * 11 10 9 14 14 H 1.08001 * 119.99717 * 240.05855 * 13 11 10 15 15 C 1.37878 * 119.99927 * 59.79255 * 13 11 10 16 16 N 1.31506 * 120.00151 * 0.27135 * 15 13 11 17 17 Si 1.86799 * 119.99753 * 180.27338 * 15 13 11 18 18 H 1.48501 * 109.47250 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47134 * 119.99655 * 17 15 13 20 20 H 1.48501 * 109.47213 * 239.99801 * 17 15 13 21 21 C 1.46939 * 120.60298 * 176.66094 * 7 5 3 22 22 N 1.46899 * 109.47405 * 297.91947 * 3 2 1 23 23 C 1.47012 * 110.99913 * 303.66046 * 22 3 2 24 24 C 1.53097 * 109.26240 * 177.60643 * 23 22 3 25 25 O 1.43018 * 109.25662 * 56.84674 * 24 23 22 26 26 C 1.43016 * 113.73837 * 301.33268 * 25 24 23 27 27 H 1.08992 * 109.50877 * 298.73465 * 26 25 24 28 28 C 1.53007 * 109.50427 * 178.60317 * 26 25 24 29 29 C 1.53001 * 109.47165 * 65.00160 * 28 26 25 30 30 C 1.47011 * 111.00170 * 180.02562 * 22 3 2 31 31 H 1.09003 * 109.47046 * 65.01966 * 1 2 3 32 32 H 1.08998 * 109.47432 * 185.02088 * 1 2 3 33 33 H 1.08997 * 109.47266 * 305.02237 * 1 2 3 34 34 H 1.09008 * 109.46771 * 240.00205 * 2 1 3 35 35 H 1.09000 * 109.46894 * 120.00512 * 2 1 3 36 36 H 1.09002 * 109.58711 * 6.59684 * 8 7 5 37 37 H 1.09006 * 109.70543 * 246.25025 * 8 7 5 38 38 H 1.09004 * 109.49624 * 294.68637 * 9 8 7 39 39 H 1.08996 * 109.50057 * 174.58683 * 9 8 7 40 40 H 1.08995 * 109.46505 * 178.61744 * 10 9 8 41 41 H 1.08996 * 109.45846 * 58.65544 * 10 9 8 42 42 H 0.97000 * 120.00017 * 180.02562 * 16 15 13 43 43 H 1.09007 * 109.55956 * 113.81103 * 21 7 5 44 44 H 1.08992 * 109.61720 * 353.38687 * 21 7 5 45 45 H 1.09002 * 109.51148 * 297.54405 * 23 22 3 46 46 H 1.09010 * 109.50699 * 57.67041 * 23 22 3 47 47 H 1.08998 * 109.51212 * 176.78008 * 24 23 22 48 48 H 1.09003 * 109.50714 * 296.92017 * 24 23 22 49 49 H 1.08999 * 109.46668 * 185.00166 * 28 26 25 50 50 H 1.08995 * 109.46906 * 305.00069 * 28 26 25 51 51 H 1.08998 * 109.46514 * 300.00018 * 29 28 26 52 52 H 1.09002 * 109.46673 * 59.99951 * 29 28 26 53 53 H 1.08997 * 109.46673 * 179.97438 * 29 28 26 54 54 H 1.09004 * 109.50340 * 302.32355 * 30 22 3 55 55 H 1.08995 * 109.51183 * 62.45180 * 30 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6465 1.9670 0.8707 5 6 3.5461 1.4427 0.0517 6 8 4.1850 1.8665 -0.8881 7 7 4.1830 0.9721 1.1421 8 6 3.4237 0.5228 2.3170 9 6 3.8616 -0.9016 2.6720 10 6 5.3806 -0.9332 2.8557 11 6 6.0631 -0.5302 1.5464 12 1 5.7594 -1.2129 0.7529 13 6 7.5588 -0.5928 1.7189 14 1 8.1562 0.2960 1.5787 15 6 8.1641 -1.7834 2.0609 16 7 7.4367 -2.8657 2.2315 17 14 10.0174 -1.8592 2.2822 18 1 10.6008 -0.5162 2.0349 19 1 10.3333 -2.2890 3.6680 20 1 10.5915 -2.8328 1.3189 21 6 5.6501 0.8982 1.1779 22 7 1.5919 2.1203 -1.2238 23 6 2.0318 1.3904 -2.4216 24 6 1.4942 2.0964 -3.6692 25 8 1.9383 3.4559 -3.6700 26 6 1.5270 4.1966 -2.5179 27 1 0.4384 4.2308 -2.4766 28 6 2.0809 5.6204 -2.6014 29 6 1.4508 6.3438 -3.7933 30 6 2.0650 3.5118 -1.2587 31 1 -0.3633 0.4340 -0.9316 32 1 -0.3634 -1.0237 0.0899 33 1 -0.3633 0.5897 0.8415 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 2.3580 0.5312 2.0884 37 1 3.6220 1.1865 3.1586 38 1 3.5783 -1.5805 1.8676 39 1 3.3767 -1.2112 3.5978 40 1 5.6921 -1.9404 3.1325 41 1 5.6657 -0.2358 3.6434 42 1 7.8626 -3.7032 2.4725 43 1 6.0324 1.5935 1.9254 44 1 6.0534 1.1539 0.1981 45 1 3.1211 1.3700 -2.4560 46 1 1.6490 0.3703 -2.3873 47 1 1.8651 1.5918 -4.5613 48 1 0.4045 2.0696 -3.6614 49 1 1.8428 6.1573 -1.6832 50 1 3.1626 5.5824 -2.7299 51 1 1.6890 5.8067 -4.7114 52 1 0.3691 6.3817 -3.6647 53 1 1.8451 7.3582 -3.8525 54 1 1.7063 4.0404 -0.3754 55 1 3.1547 3.5255 -1.2743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904974.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:32 Heat of formation + Delta-G solvation = -98.864240 kcal Electronic energy + Delta-G solvation = -32266.702076 eV Core-core repulsion = 28302.597315 eV Total energy + Delta-G solvation = -3964.104761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -42.03690 -40.24900 -38.57020 -37.15119 -35.52755 -34.90214 -33.82830 -32.95127 -31.97603 -30.92611 -29.26658 -27.30785 -26.65507 -25.57158 -25.05388 -23.39065 -23.09496 -22.21789 -21.60394 -21.13705 -19.66843 -18.64867 -18.10339 -17.72250 -17.48410 -16.70124 -16.64010 -16.33903 -16.08903 -15.76340 -15.50353 -15.39193 -15.06837 -14.75932 -14.66746 -14.57390 -14.28912 -14.10922 -14.05294 -13.71750 -13.60619 -13.21632 -12.94096 -12.91630 -12.82694 -12.69901 -12.63487 -12.51177 -12.16882 -12.12181 -12.00864 -11.91192 -11.85903 -11.73157 -11.66170 -11.49532 -11.34196 -11.28302 -11.13242 -10.82350 -10.53296 -10.46230 -9.49729 -9.20803 -8.14437 -6.29608 1.36220 1.38735 1.49533 1.55003 2.09277 2.40496 2.66838 2.87787 3.11903 3.47239 3.72164 3.88756 3.96169 4.01833 4.08118 4.13198 4.19236 4.22105 4.29008 4.34491 4.40651 4.46078 4.48730 4.52518 4.55202 4.58643 4.60264 4.68187 4.73083 4.78011 4.82248 4.89597 4.93315 4.99178 5.02894 5.08495 5.09644 5.12945 5.18673 5.25470 5.28102 5.29854 5.43746 5.44848 5.54213 5.54954 5.58255 5.79434 5.86691 5.90106 6.10855 6.29450 6.31513 6.53917 6.79717 7.17961 7.38635 8.89113 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003045 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.567694 B = 9193.753184 C =10102.152081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.075 3.925 4 H 0.131 0.869 5 C 0.474 3.526 6 O -0.583 6.583 7 N -0.602 5.602 8 C 0.102 3.898 9 C -0.126 4.126 10 C -0.106 4.106 11 C 0.045 3.955 12 H -0.015 1.015 13 C -0.539 4.539 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.282 1.282 21 C 0.131 3.869 22 N -0.489 5.489 23 C -0.004 4.004 24 C 0.071 3.929 25 O -0.401 6.401 26 C 0.100 3.900 27 H 0.077 0.923 28 C -0.116 4.116 29 C -0.142 4.142 30 C 0.006 3.994 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.049 0.951 51 H 0.046 0.954 52 H 0.064 0.936 53 H 0.064 0.936 54 H 0.094 0.906 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.049 10.960 -3.326 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C -0.037 4.037 4 H 0.148 0.852 5 C 0.262 3.738 6 O -0.464 6.464 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.164 4.164 10 C -0.144 4.144 11 C 0.026 3.974 12 H 0.003 0.997 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.208 1.208 21 C 0.008 3.992 22 N -0.211 5.211 23 C -0.132 4.132 24 C -0.005 4.005 25 O -0.320 6.320 26 C 0.043 3.957 27 H 0.094 0.906 28 C -0.154 4.154 29 C -0.199 4.199 30 C -0.123 4.123 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.112 0.888 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.083 0.917 53 H 0.083 0.917 54 H 0.113 0.887 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.126 11.092 -3.911 23.311 hybrid contribution 2.710 -0.737 0.218 2.817 sum -17.416 10.355 -3.693 20.596 Atomic orbital electron populations 1.21576 0.91863 1.02095 1.03160 1.21805 0.99208 0.91986 1.02951 1.22070 0.86686 0.98857 0.96089 0.85183 1.22718 0.92917 0.76694 0.81470 1.90595 1.69622 1.49039 1.37180 1.48506 1.07097 1.61435 1.16299 1.22156 0.96900 0.95604 0.87283 1.21908 0.96625 0.96065 1.01788 1.21423 0.93525 1.02055 0.97419 1.18829 0.94276 0.90326 0.93955 0.99692 1.21456 0.93202 0.95459 1.47651 0.93348 1.25657 1.02309 0.95288 0.94813 1.69998 1.36478 1.00331 1.48196 0.85579 0.80574 0.78045 0.77909 1.19524 1.19958 1.20828 1.21490 0.79227 0.98630 0.99815 1.62806 1.55683 1.01860 1.00793 1.23069 0.99890 0.98979 0.91231 1.22664 0.99339 0.81576 0.96965 1.87952 1.77882 1.23339 1.42855 1.22237 0.98557 0.91374 0.83573 0.90560 1.21554 1.00239 0.92817 1.00799 1.21648 1.01001 0.99898 0.97370 1.23049 0.99633 0.89436 1.00134 0.92010 0.91967 0.91180 0.92949 0.89813 0.86513 0.90150 0.93375 0.89026 0.91843 0.94569 0.92870 0.92570 0.93540 0.94290 0.88950 0.88087 0.90959 0.88787 0.93232 0.93477 0.91673 0.91747 0.88740 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.71 71.98 0.70 -1.29 16 2 C -0.12 -2.60 4.59 30.59 0.14 -2.46 16 3 C 0.08 1.82 1.43 44.17 0.06 1.88 16 4 H 0.13 2.49 7.51 -2.39 -0.02 2.48 16 5 C 0.47 16.35 6.39 87.66 0.56 16.91 16 6 O -0.58 -24.93 11.01 -3.04 -0.03 -24.96 16 7 N -0.60 -21.34 2.97 -818.89 -2.43 -23.78 16 8 C 0.10 2.75 5.51 86.36 0.48 3.22 16 9 C -0.13 -4.06 5.86 30.67 0.18 -3.88 16 10 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 11 C 0.05 2.29 2.25 -11.46 -0.03 2.26 16 12 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 13 C -0.54 -30.20 8.57 25.60 0.22 -29.98 16 14 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 15 C 0.02 1.03 5.30 84.66 0.45 1.48 16 16 N -0.91 -51.99 11.31 21.45 0.24 -51.75 16 17 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 C 0.13 5.85 5.65 86.36 0.49 6.33 16 22 N -0.49 -11.86 4.18 -874.37 -3.65 -15.51 16 23 C 0.00 -0.10 4.90 86.31 0.42 0.32 16 24 C 0.07 1.65 7.01 72.01 0.50 2.16 16 25 O -0.40 -10.89 10.01 -148.98 -1.49 -12.38 16 26 C 0.10 2.26 2.81 30.63 0.09 2.35 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 C -0.12 -2.29 5.65 30.60 0.17 -2.12 16 29 C -0.14 -2.38 9.81 71.98 0.71 -1.67 16 30 C 0.01 0.14 4.55 86.32 0.39 0.53 16 31 H 0.06 0.99 7.82 -2.39 -0.02 0.98 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.32 6.18 -2.38 -0.01 1.30 16 35 H 0.08 1.80 4.86 -2.39 -0.01 1.78 16 36 H 0.12 2.27 4.34 -2.39 -0.01 2.26 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 1.66 7.67 -2.39 -0.02 1.64 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 3.24 6.03 -2.39 -0.01 3.23 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 44 H 0.05 2.32 7.02 -2.39 -0.02 2.30 16 45 H 0.04 1.43 5.54 -2.39 -0.01 1.41 16 46 H 0.09 2.25 6.07 -2.38 -0.01 2.23 16 47 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 52 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 55 H 0.04 1.35 5.62 -2.39 -0.01 1.34 16 Total: -1.00 -69.02 399.91 1.20 -67.82 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.85 Total: 23.10 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.68 Total: -8.48 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -5.84 Total: -91.04 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.52 Total: -37.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.02 1.20 -67.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904974.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.042 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds