Wall clock time and date at job start Wed Apr 1 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 H 1.08991 * 109.47488 * 56.72359 * 3 2 1 5 5 O 1.42908 * 109.46866 * 296.72363 * 3 2 1 6 6 C 1.42894 * 113.99506 * 90.00236 * 5 3 2 7 7 C 1.53000 * 109.47193 * 209.99930 * 6 5 3 8 8 C 1.53002 * 109.47460 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46896 * 60.00262 * 8 7 6 10 10 C 1.52999 * 109.46917 * 299.99722 * 9 8 7 11 11 C 1.53002 * 109.47111 * 60.00409 * 10 9 8 12 12 C 1.50695 * 109.46997 * 176.73102 * 3 2 1 13 13 O 1.21281 * 120.00398 * 108.20553 * 12 3 2 14 14 N 1.34777 * 119.99759 * 288.20145 * 12 3 2 15 15 C 1.47075 * 120.88298 * 4.79947 * 14 12 3 16 16 C 1.53700 * 108.27734 * 128.75578 * 15 14 12 17 17 N 1.46894 * 109.25670 * 54.08261 * 16 15 14 18 18 C 1.46899 * 111.00164 * 172.60766 * 17 16 15 19 19 C 1.50701 * 109.47121 * 294.30699 * 18 17 16 20 20 H 1.07999 * 120.00037 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99786 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99744 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46854 * 89.99950 * 23 21 19 25 25 H 1.48496 * 109.47277 * 210.00209 * 23 21 19 26 26 H 1.48502 * 109.47232 * 330.00144 * 23 21 19 27 27 C 1.46896 * 111.27307 * 296.76117 * 17 16 15 28 28 C 1.47084 * 120.88264 * 185.08322 * 14 12 3 29 29 H 1.09005 * 109.47019 * 300.00342 * 1 2 3 30 30 H 1.09007 * 109.47137 * 60.00048 * 1 2 3 31 31 H 1.08993 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47477 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47305 * 119.99488 * 2 1 3 34 34 H 1.09001 * 109.47437 * 329.99926 * 6 5 3 35 35 H 1.09003 * 109.47208 * 60.00138 * 7 6 5 36 36 H 1.09001 * 109.46926 * 300.00310 * 7 6 5 37 37 H 1.08994 * 109.46795 * 300.00008 * 8 7 6 38 38 H 1.09000 * 109.46794 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.47413 * 59.99883 * 9 8 7 40 40 H 1.08999 * 109.46645 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.47274 * 180.02562 * 10 9 8 42 42 H 1.09001 * 109.47210 * 300.00285 * 10 9 8 43 43 H 1.09002 * 109.47285 * 179.97438 * 11 10 9 44 44 H 1.09001 * 109.47185 * 59.99860 * 11 10 9 45 45 H 1.08993 * 109.63228 * 248.52445 * 15 14 12 46 46 H 1.09001 * 109.62747 * 9.10657 * 15 14 12 47 47 H 1.09001 * 109.64642 * 294.08071 * 16 15 14 48 48 H 1.08998 * 109.42226 * 173.95499 * 16 15 14 49 49 H 1.09000 * 109.47248 * 54.30323 * 18 17 16 50 50 H 1.08997 * 109.47276 * 174.30551 * 18 17 16 51 51 H 0.97002 * 119.99743 * 180.02562 * 22 21 19 52 52 H 1.09007 * 109.49083 * 303.14292 * 27 17 16 53 53 H 1.09001 * 109.52046 * 183.07910 * 27 17 16 54 54 H 1.09004 * 109.62448 * 350.89063 * 28 14 12 55 55 H 1.08994 * 109.63389 * 111.47322 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6295 1.9730 0.8591 5 8 1.6275 2.0935 -1.2035 6 6 0.3605 2.7470 -1.1057 7 6 -0.3220 2.7438 -2.4751 8 6 -1.6784 3.4440 -2.3707 9 6 -1.4727 4.8874 -1.9068 10 6 -0.7904 4.8906 -0.5374 11 6 0.5660 4.1904 -0.6418 12 6 3.5447 1.4432 0.0810 13 8 4.2042 1.7527 -0.8887 14 7 4.1578 1.1001 1.2312 15 6 3.3829 0.6214 2.3860 16 6 4.0044 -0.6985 2.8697 17 7 5.4366 -0.4949 3.1248 18 6 6.0330 -1.6807 3.7541 19 6 5.4406 -1.8728 5.1264 20 1 4.6958 -1.1827 5.4944 21 6 5.8494 -2.9295 5.9121 22 7 6.7568 -3.7695 5.4641 23 14 5.1156 -3.1672 7.6134 24 1 3.9098 -4.0287 7.5163 25 1 6.1168 -3.8148 8.4983 26 1 4.7365 -1.8470 8.1778 27 6 6.1517 -0.1368 1.8927 28 6 5.6189 1.2003 1.3669 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 -0.2659 2.2195 -0.3864 35 1 -0.4681 1.7155 -2.8059 36 1 0.3044 3.2713 -3.1944 37 1 -2.3049 2.9168 -1.6513 38 1 -2.1643 3.4421 -3.3464 39 1 -0.8461 5.4146 -2.6262 40 1 -2.4391 5.3861 -1.8319 41 1 -0.6443 5.9189 -0.2066 42 1 -1.4170 4.3635 0.1821 43 1 1.0524 4.1931 0.3337 44 1 1.1926 4.7176 -1.3612 45 1 3.4210 1.3619 3.1849 46 1 2.3481 0.4529 2.0881 47 1 3.8764 -1.4654 2.1058 48 1 3.5124 -1.0151 3.7894 49 1 5.8262 -2.5592 3.1429 50 1 7.1109 -1.5432 3.8397 51 1 7.0441 -4.5131 6.0167 52 1 5.9939 -0.9116 1.1423 53 1 7.2174 -0.0462 2.1034 54 1 6.0631 1.4147 0.3949 55 1 5.8678 1.9954 2.0697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207160.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:16 Heat of formation + Delta-G solvation = -108.184427 kcal Electronic energy + Delta-G solvation = -31246.238391 eV Core-core repulsion = 27281.729476 eV Total energy + Delta-G solvation = -3964.508914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.66616 -40.21657 -38.95702 -37.57555 -36.09380 -34.63345 -34.02741 -32.16186 -31.72420 -30.86424 -30.10934 -28.37348 -26.87496 -24.71064 -23.97047 -23.57638 -23.14750 -22.88119 -22.08321 -20.81772 -19.95931 -18.65523 -18.48783 -17.81791 -17.12616 -16.70253 -16.61147 -16.33041 -16.02915 -15.81949 -15.47514 -15.39811 -15.26829 -14.95133 -14.88360 -14.75726 -14.24743 -14.04102 -13.94152 -13.59765 -13.51206 -13.29740 -13.11773 -13.06845 -13.03650 -12.77189 -12.67638 -12.57717 -12.44009 -12.35084 -12.13598 -12.07975 -11.98828 -11.81858 -11.68045 -11.46766 -11.44832 -11.27990 -11.04960 -10.75156 -10.61195 -10.31133 -9.81881 -9.08054 -8.19251 -6.29730 1.44224 1.44851 1.46007 1.57236 1.66069 2.41841 2.72086 3.12975 3.20889 3.34289 3.73284 3.75763 3.81246 3.88286 3.94268 3.99956 4.04925 4.15560 4.20008 4.24280 4.29288 4.30783 4.36849 4.40751 4.45541 4.50383 4.56881 4.58851 4.67165 4.68217 4.76051 4.80604 4.91653 4.93301 4.97909 5.01234 5.08590 5.11411 5.14481 5.19139 5.21582 5.23854 5.24631 5.30541 5.34965 5.39559 5.42105 5.52887 5.64586 6.02198 6.12709 6.25153 6.38470 6.54239 6.86227 7.04275 7.40379 8.92120 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.002399 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.454555 B =11669.045496 C =12283.060096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.109 0.891 5 O -0.376 6.376 6 C 0.075 3.925 7 C -0.115 4.115 8 C -0.111 4.111 9 C -0.123 4.123 10 C -0.113 4.113 11 C -0.144 4.144 12 C 0.511 3.489 13 O -0.573 6.573 14 N -0.607 5.607 15 C 0.109 3.891 16 C 0.050 3.950 17 N -0.537 5.537 18 C 0.208 3.792 19 C -0.519 4.519 20 H 0.072 0.928 21 C -0.001 4.001 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.260 1.260 27 C 0.044 3.956 28 C 0.127 3.873 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.016 0.984 48 H 0.091 0.909 49 H -0.041 1.041 50 H 0.004 0.996 51 H 0.263 0.737 52 H 0.013 0.987 53 H 0.082 0.918 54 H 0.085 0.915 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.647 15.189 -11.331 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.022 3.978 4 H 0.127 0.873 5 O -0.294 6.294 6 C 0.019 3.981 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.151 4.151 11 C -0.182 4.182 12 C 0.300 3.700 13 O -0.452 6.452 14 N -0.341 5.341 15 C -0.012 4.012 16 C -0.079 4.079 17 N -0.262 5.262 18 C 0.082 3.918 19 C -0.558 4.558 20 H 0.090 0.910 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.796 3.204 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.184 1.184 27 C -0.085 4.085 28 C 0.004 3.996 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.137 0.863 47 H 0.034 0.966 48 H 0.110 0.890 49 H -0.024 1.024 50 H 0.022 0.978 51 H 0.072 0.928 52 H 0.031 0.969 53 H 0.100 0.900 54 H 0.104 0.896 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.049 15.607 -11.655 27.953 hybrid contribution 0.684 -1.399 0.262 1.579 sum -19.365 14.208 -11.393 26.584 Atomic orbital electron populations 1.21944 0.92552 1.03518 1.03062 1.22178 0.99089 0.93933 1.03364 1.21939 0.89605 0.95904 0.90320 0.87326 1.88057 1.38123 1.70476 1.32782 1.22651 0.83954 0.92306 0.99230 1.21596 0.96782 1.01514 0.95398 1.21502 0.95236 0.95597 1.02547 1.21594 1.01060 0.96816 0.96574 1.21491 0.94783 1.00744 0.98035 1.22078 0.98765 0.96216 1.01095 1.21050 0.91083 0.76102 0.81780 1.90654 1.67780 1.49844 1.36899 1.48249 1.07972 1.64736 1.13186 1.22371 0.95803 0.95461 0.87614 1.22460 0.89416 0.95710 1.00329 1.62010 1.02867 1.38021 1.23278 1.19381 0.93942 0.84942 0.93542 1.21449 1.23320 1.10707 1.00288 0.90984 1.25958 0.95513 0.95516 1.02882 1.70101 1.32131 1.16236 1.39279 0.85351 0.77919 0.78702 0.78460 1.19706 1.21366 1.18445 1.22418 0.99260 0.96037 0.90788 1.21626 0.79468 0.96873 1.01607 0.90491 0.91621 0.91109 0.92375 0.89407 0.89173 0.91307 0.92699 0.90568 0.90569 0.92636 0.90380 0.91246 0.90636 0.92249 0.93006 0.88984 0.86321 0.96593 0.89038 1.02369 0.97806 0.92792 0.96896 0.89994 0.89643 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.53 71.98 0.61 -1.48 16 2 C -0.15 -2.95 5.22 30.59 0.16 -2.79 16 3 C 0.08 1.91 1.82 29.85 0.05 1.96 16 4 H 0.11 1.88 7.08 -2.39 -0.02 1.87 16 5 O -0.38 -9.49 9.10 -130.21 -1.18 -10.67 16 6 C 0.08 1.29 1.34 30.60 0.04 1.34 16 7 C -0.12 -1.78 5.42 30.60 0.17 -1.61 16 8 C -0.11 -1.14 5.92 30.60 0.18 -0.96 16 9 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 10 C -0.11 -1.28 5.92 30.59 0.18 -1.10 16 11 C -0.14 -2.38 5.53 30.60 0.17 -2.21 16 12 C 0.51 15.79 7.06 87.66 0.62 16.41 16 13 O -0.57 -22.63 15.99 15.74 0.25 -22.38 16 14 N -0.61 -17.77 3.00 -817.06 -2.45 -20.22 16 15 C 0.11 2.76 5.82 86.51 0.50 3.26 16 16 C 0.05 1.71 5.47 86.54 0.47 2.19 16 17 N -0.54 -22.11 4.62 -898.89 -4.15 -26.26 16 18 C 0.21 10.80 4.72 85.56 0.40 11.20 16 19 C -0.52 -27.97 8.41 25.60 0.22 -27.76 16 20 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 21 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 22 N -0.94 -55.51 13.29 21.45 0.28 -55.23 16 23 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 C 0.04 1.62 5.62 86.38 0.49 2.10 16 28 C 0.13 3.97 6.61 86.35 0.57 4.54 16 29 H 0.08 0.76 7.93 -2.38 -0.02 0.74 16 30 H 0.06 0.89 5.45 -2.38 -0.01 0.88 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.72 5.59 -2.39 -0.01 1.71 16 34 H 0.09 1.19 5.22 -2.39 -0.01 1.18 16 35 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.06 1.00 7.97 -2.39 -0.02 0.98 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.12 2.21 4.18 -2.39 -0.01 2.20 16 47 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.09 3.29 6.67 -2.39 -0.02 3.27 16 49 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 50 H 0.00 0.22 7.97 -2.39 -0.02 0.20 16 51 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 52 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 53 H 0.08 2.95 7.99 -2.39 -0.02 2.93 16 54 H 0.09 2.76 7.04 -2.39 -0.02 2.74 16 55 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -70.83 410.07 1.10 -69.73 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.85 Total: 16.12 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.48 Total: 4.44 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -6.32 Total: -101.71 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.93 Total: -33.05 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.83 1.10 -69.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207160.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.452 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds