Wall clock time and date at job start Tue Mar 31 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 C 1.53001 * 109.46726 * 120.00012 * 2 1 3 5 5 H 1.08998 * 109.47003 * 299.99384 * 4 2 1 6 6 C 1.52997 * 109.47261 * 59.99988 * 4 2 1 7 7 C 1.53005 * 109.46973 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46895 * 299.99696 * 7 6 4 9 9 H 1.08999 * 109.47149 * 300.00294 * 8 7 6 10 10 C 1.50702 * 109.46553 * 179.97438 * 8 7 6 11 11 O 1.21285 * 119.99870 * 239.99536 * 10 8 7 12 12 N 1.34767 * 119.99973 * 60.00503 * 10 8 7 13 13 C 1.46500 * 119.99946 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47311 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.78064 * 303.21674 * 14 13 12 16 16 C 1.54327 * 110.71769 * 66.45147 * 14 13 12 17 17 N 1.47031 * 107.26879 * 140.55849 * 16 14 13 18 18 C 1.36938 * 125.64895 * 181.03688 * 17 16 14 19 19 H 1.07998 * 119.99809 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99771 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99586 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47460 * 59.99975 * 22 20 18 24 24 H 1.48505 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47333 * 299.99702 * 22 20 18 26 26 C 1.47422 * 108.70136 * 1.05978 * 17 16 14 27 27 C 1.54908 * 104.83357 * 335.86884 * 26 17 16 28 28 H 1.09000 * 111.04072 * 155.09810 * 27 26 17 29 29 O 1.42897 * 111.00835 * 278.93632 * 27 26 17 30 30 C 1.53004 * 109.46931 * 60.00116 * 8 7 6 31 31 C 1.52994 * 109.47248 * 300.00016 * 30 8 7 32 32 H 1.08998 * 109.47396 * 300.00450 * 1 2 3 33 33 H 1.09002 * 109.47058 * 59.99977 * 1 2 3 34 34 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46808 * 240.00023 * 2 1 3 36 36 H 1.08995 * 109.47175 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47104 * 299.99995 * 3 2 1 38 38 H 1.08998 * 109.47283 * 59.99480 * 3 2 1 39 39 H 1.08995 * 109.47175 * 299.99517 * 6 4 2 40 40 H 1.08998 * 109.46868 * 59.99865 * 6 4 2 41 41 H 1.08994 * 109.46806 * 179.97438 * 7 6 4 42 42 H 1.08998 * 109.46978 * 59.99587 * 7 6 4 43 43 H 0.97001 * 120.00521 * 359.97438 * 12 10 8 44 44 H 1.08999 * 109.47403 * 59.99819 * 13 12 10 45 45 H 1.09005 * 109.47452 * 299.99946 * 13 12 10 46 46 H 1.08998 * 109.88371 * 259.97284 * 16 14 13 47 47 H 1.08994 * 109.88463 * 21.14580 * 16 14 13 48 48 H 0.97000 * 119.99734 * 179.97438 * 21 20 18 49 49 H 1.09000 * 110.36378 * 217.03375 * 26 17 16 50 50 H 1.09001 * 110.46274 * 94.75551 * 26 17 16 51 51 H 0.96698 * 114.00190 * 292.19858 * 29 27 26 52 52 H 1.08999 * 109.47058 * 60.00123 * 30 8 7 53 53 H 1.08996 * 109.46631 * 179.97438 * 30 8 7 54 54 H 1.09001 * 109.47187 * 180.02562 * 31 30 8 55 55 H 1.09008 * 109.46921 * 299.99505 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5299 -2.1637 1.2493 7 6 2.0404 -2.8851 2.4983 8 6 3.5704 -2.8852 2.4976 9 1 3.9334 -3.3989 1.6074 10 6 4.0731 -3.5952 3.7282 11 8 4.7708 -3.0056 4.5260 12 7 3.7476 -4.8854 3.9420 13 6 4.2368 -5.5758 5.1379 14 6 3.7272 -7.0185 5.1383 15 1 2.6390 -7.0442 5.0817 16 6 4.3534 -7.8190 3.9770 17 7 4.6548 -9.1647 4.4871 18 6 5.2386 -10.1767 3.7728 19 1 5.5192 -10.0180 2.7421 20 6 5.4706 -11.4061 4.3740 21 7 5.1291 -11.5994 5.6303 22 14 6.2676 -12.7864 3.3998 23 1 7.6108 -12.3542 2.9369 24 1 6.4037 -13.9871 4.2630 25 1 5.4214 -13.1157 2.2247 26 6 4.2239 -9.2441 5.8947 27 6 4.2298 -7.7779 6.3946 28 1 3.5431 -7.6468 7.2309 29 8 5.5502 -7.3630 6.7498 30 6 4.0804 -1.4427 2.4976 31 6 3.5699 -0.7213 1.2487 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 0.4399 -2.1637 1.2493 40 1 1.8933 -2.6775 0.3593 41 1 1.6766 -3.9126 2.4985 42 1 1.6774 -2.3714 3.3884 43 1 3.1894 -5.3570 3.3040 44 1 3.8742 -5.0617 6.0281 45 1 5.3268 -5.5759 5.1372 46 1 3.6471 -7.8859 3.1496 47 1 5.2715 -7.3342 3.6452 48 1 5.2909 -12.4587 6.0502 49 1 4.9260 -9.8448 6.4730 50 1 3.2204 -9.6641 5.9629 51 1 5.9068 -7.8104 7.5294 52 1 3.7175 -0.9290 3.3878 53 1 5.1704 -1.4428 2.4975 54 1 3.9337 0.3063 1.2484 55 1 3.9330 -1.2350 0.3584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958515711.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:13 Heat of formation + Delta-G solvation = -119.958356 kcal Electronic energy + Delta-G solvation = -30348.741249 eV Core-core repulsion = 26383.721779 eV Total energy + Delta-G solvation = -3965.019470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.33090 -40.04205 -39.28372 -36.34076 -36.08678 -35.79179 -33.95545 -31.92857 -31.51492 -30.51261 -29.31940 -27.93875 -27.25989 -25.57699 -24.26334 -23.23398 -22.34584 -21.66130 -21.16612 -20.58734 -20.50721 -19.13449 -18.38662 -17.80417 -17.03610 -16.81573 -16.56711 -16.12514 -15.82171 -15.58075 -15.34242 -15.08378 -14.96650 -14.77575 -14.49196 -14.37160 -14.15089 -14.09941 -13.86286 -13.62121 -13.25373 -13.17331 -13.03229 -12.99009 -12.70170 -12.61649 -12.47906 -12.36035 -12.20601 -12.03919 -11.98063 -11.95291 -11.85936 -11.82721 -11.62091 -11.53864 -11.24233 -11.10893 -10.81354 -10.71722 -10.67743 -10.55901 -10.05659 -8.85785 -7.78624 -5.21015 1.45982 1.48833 1.54947 1.66794 2.22569 2.48995 3.28198 3.35796 3.60357 3.61561 3.71357 3.78926 3.90297 3.96466 3.98842 4.04614 4.11590 4.17986 4.40175 4.43222 4.45079 4.47845 4.60151 4.61050 4.63946 4.66254 4.71594 4.74698 4.83849 4.88423 4.91076 4.93944 5.01831 5.07752 5.09398 5.15686 5.19177 5.21835 5.29087 5.30813 5.33643 5.35671 5.39422 5.42933 5.46003 5.49674 5.51872 5.62678 5.70843 5.77548 6.28896 6.58206 6.95506 7.10974 7.28179 7.78050 8.40914 9.23235 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.002088 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.751524 B =13409.893529 C =14119.921567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.080 4.080 5 H 0.063 0.937 6 C -0.110 4.110 7 C -0.106 4.106 8 C -0.099 4.099 9 H 0.111 0.889 10 C 0.510 3.490 11 O -0.589 6.589 12 N -0.718 5.718 13 C 0.155 3.845 14 C -0.090 4.090 15 H 0.114 0.886 16 C 0.143 3.857 17 N -0.620 5.620 18 C -0.238 4.238 19 H 0.077 0.923 20 C -0.067 4.067 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.127 3.873 27 C 0.091 3.909 28 H 0.089 0.911 29 O -0.570 6.570 30 C -0.096 4.096 31 C -0.109 4.109 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.412 0.588 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.012 0.988 48 H 0.247 0.753 49 H 0.079 0.921 50 H 0.002 0.998 51 H 0.388 0.612 52 H 0.053 0.947 53 H 0.051 0.949 54 H 0.071 0.929 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 22.844 -8.975 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.099 4.099 5 H 0.081 0.919 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.120 4.120 9 H 0.129 0.871 10 C 0.298 3.702 11 O -0.470 6.470 12 N -0.369 5.369 13 C 0.031 3.969 14 C -0.109 4.109 15 H 0.132 0.868 16 C 0.018 3.982 17 N -0.346 5.346 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.208 1.208 24 H -0.218 1.218 25 H -0.203 1.203 26 C 0.002 3.998 27 C 0.031 3.969 28 H 0.106 0.894 29 O -0.378 6.378 30 C -0.134 4.134 31 C -0.147 4.147 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.249 0.751 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.057 0.943 49 H 0.097 0.903 50 H 0.020 0.980 51 H 0.237 0.763 52 H 0.072 0.928 53 H 0.070 0.930 54 H 0.089 0.911 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.501 23.425 -8.913 27.174 hybrid contribution 0.578 -1.742 0.147 1.841 sum -9.923 21.683 -8.766 25.406 Atomic orbital electron populations 1.21900 0.95017 1.02128 1.01612 1.21115 0.95899 0.96050 0.97725 1.21906 1.01250 0.95997 1.01623 1.21203 0.94673 0.95914 0.98098 0.91858 1.21634 1.01185 0.94781 0.97153 1.21528 0.91185 1.02053 0.99600 1.21396 0.98462 0.97038 0.95085 0.87086 1.21358 0.79136 0.81602 0.88060 1.90670 1.40033 1.67176 1.49088 1.46042 1.53313 1.11971 1.25599 1.20855 0.98347 0.90119 0.87598 1.22444 1.00924 0.92855 0.94672 0.86771 1.21426 0.96330 0.85255 0.95195 1.44640 1.70856 1.09193 1.09944 1.19384 1.31456 0.90947 0.94878 0.90516 1.25577 1.02625 1.00063 0.97639 1.69984 1.54137 1.23422 1.12188 0.85143 0.78364 0.78314 0.77447 1.20758 1.21848 1.20310 1.22436 0.97458 0.93737 0.86185 1.23125 0.84246 0.93766 0.95806 0.89385 1.86383 1.31739 1.67113 1.52525 1.21288 0.99931 0.93234 0.98926 1.21634 0.95605 1.00557 0.96865 0.93025 0.92645 0.91968 0.91053 0.92392 0.92556 0.93049 0.90297 0.90931 0.90196 0.92222 0.75124 0.91578 0.93528 0.94792 0.96998 0.94321 0.90313 0.97978 0.76347 0.92824 0.93009 0.91058 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.84 71.98 0.64 -0.77 16 2 C -0.09 -0.91 2.51 -10.79 -0.03 -0.94 16 3 C -0.15 -1.53 8.84 71.98 0.64 -0.90 16 4 C -0.08 -0.95 1.78 -10.79 -0.02 -0.97 16 5 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 6 C -0.11 -1.22 4.85 30.59 0.15 -1.07 16 7 C -0.11 -1.50 5.10 30.60 0.16 -1.34 16 8 C -0.10 -1.84 2.53 -11.54 -0.03 -1.87 16 9 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.51 13.86 7.15 87.66 0.63 14.49 16 11 O -0.59 -21.41 15.98 -3.04 -0.05 -21.46 16 12 N -0.72 -18.16 5.29 -463.05 -2.45 -20.61 16 13 C 0.16 4.78 4.59 86.38 0.40 5.18 16 14 C -0.09 -2.89 2.95 -9.60 -0.03 -2.91 16 15 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 16 C 0.14 5.76 6.52 86.73 0.57 6.33 16 17 N -0.62 -31.58 3.39 -691.99 -2.35 -33.93 16 18 C -0.24 -13.33 10.27 84.03 0.86 -12.47 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 21 N -0.95 -55.37 10.09 21.65 0.22 -55.15 16 22 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.13 6.00 5.62 86.86 0.49 6.49 16 27 C 0.09 3.26 4.17 31.99 0.13 3.39 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 O -0.57 -21.11 12.22 -148.98 -1.82 -22.93 16 30 C -0.10 -1.86 4.49 30.59 0.14 -1.72 16 31 C -0.11 -1.50 4.85 30.59 0.15 -1.35 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.54 6.43 -2.39 -0.02 0.53 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.59 6.43 -2.39 -0.02 0.58 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.96 7.57 -2.39 -0.02 0.94 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.41 8.23 7.75 -92.71 -0.72 7.52 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.77 7.44 -2.38 -0.02 1.76 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.01 0.52 7.76 -2.39 -0.02 0.50 16 48 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.08 4.25 5.87 -2.39 -0.01 4.23 16 50 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.39 11.78 9.12 -74.06 -0.68 11.10 16 52 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 53 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 54 H 0.07 0.93 6.43 -2.39 -0.02 0.92 16 55 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -71.92 414.07 0.35 -71.57 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.53 Total: 28.65 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.30 Total: 6.27 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.58 Total: -109.68 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.87 Total: -44.39 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.92 0.35 -71.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958515711.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.386 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds