Wall clock time and date at job start Tue Mar 31 2020 23:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47163 * 2 1 4 4 H 1.08997 * 109.47030 * 56.47290 * 3 2 1 5 5 O 1.42895 * 109.47233 * 296.47123 * 3 2 1 6 6 C 1.42900 * 114.00190 * 111.07676 * 5 3 2 7 7 C 1.50703 * 109.46906 * 176.46749 * 3 2 1 8 8 O 1.21283 * 119.99571 * 107.45812 * 7 3 2 9 9 N 1.34766 * 120.00215 * 287.45496 * 7 3 2 10 10 C 1.46929 * 120.63033 * 184.56662 * 9 7 3 11 11 C 1.53198 * 108.77592 * 233.62998 * 10 9 7 12 12 C 1.53036 * 109.31370 * 305.36514 * 11 10 9 13 13 C 1.52995 * 109.46414 * 181.38311 * 12 11 10 14 14 H 1.09005 * 109.52271 * 299.92514 * 13 12 11 15 15 C 1.53031 * 109.50254 * 179.83623 * 13 12 11 16 16 C 1.53041 * 109.54204 * 178.68303 * 15 13 12 17 17 C 1.52765 * 109.38029 * 61.24036 * 16 15 13 18 18 N 1.46925 * 109.01106 * 305.58988 * 17 16 15 19 19 C 1.36933 * 120.63304 * 233.58713 * 18 17 16 20 20 H 1.07996 * 120.00354 * 152.33489 * 19 18 17 21 21 C 1.38815 * 119.99726 * 332.05542 * 19 18 17 22 22 N 1.31622 * 120.00006 * 345.55908 * 21 19 18 23 23 Si 1.86797 * 120.00136 * 165.56085 * 21 19 18 24 24 H 1.48507 * 109.46900 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47517 * 119.99724 * 23 21 19 26 26 H 1.48501 * 109.46919 * 240.00151 * 23 21 19 27 27 C 1.46932 * 118.73589 * 53.30758 * 18 17 16 28 28 C 1.53048 * 109.53711 * 61.36374 * 12 11 10 29 29 C 1.46924 * 120.63364 * 4.58841 * 9 7 3 30 30 H 1.08993 * 109.47402 * 184.02055 * 1 2 3 31 31 H 1.09007 * 109.46805 * 304.02058 * 1 2 3 32 32 H 1.08997 * 109.46960 * 64.01950 * 1 2 3 33 33 H 1.08998 * 109.47039 * 239.99835 * 2 1 3 34 34 H 1.09002 * 109.46890 * 119.99804 * 2 1 3 35 35 H 1.09001 * 109.47064 * 185.23741 * 6 5 3 36 36 H 1.09006 * 109.46991 * 305.23408 * 6 5 3 37 37 H 1.08994 * 109.47242 * 65.23228 * 6 5 3 38 38 H 1.08999 * 109.58621 * 113.84398 * 10 9 7 39 39 H 1.08996 * 109.58716 * 353.41286 * 10 9 7 40 40 H 1.08995 * 109.49857 * 185.41249 * 11 10 9 41 41 H 1.09004 * 109.49495 * 65.31381 * 11 10 9 42 42 H 1.08999 * 109.45770 * 301.35968 * 12 11 10 43 43 H 1.08996 * 109.46237 * 298.70882 * 15 13 12 44 44 H 1.08999 * 109.46148 * 58.66086 * 15 13 12 45 45 H 1.09000 * 109.49946 * 181.31825 * 16 15 13 46 46 H 1.08996 * 109.49845 * 301.38314 * 16 15 13 47 47 H 1.08999 * 109.51036 * 185.70689 * 17 16 15 48 48 H 1.09002 * 109.43344 * 65.42713 * 17 16 15 49 49 H 0.97000 * 119.99979 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58165 * 66.43371 * 27 18 17 51 51 H 1.09003 * 109.58418 * 186.85955 * 27 18 17 52 52 H 1.08989 * 109.49752 * 58.58694 * 28 12 11 53 53 H 1.09004 * 109.49478 * 178.68338 * 28 12 11 54 54 H 1.09001 * 109.58840 * 246.15490 * 29 9 7 55 55 H 1.09008 * 109.58542 * 6.58201 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6260 1.9742 0.8567 5 8 1.6327 2.0918 -1.2060 6 6 0.6522 3.1134 -1.0135 7 6 3.5446 1.4433 0.0875 8 8 4.2083 1.7382 -0.8838 9 7 4.1524 1.1166 1.2451 10 6 5.6129 1.2089 1.3758 11 6 6.1502 -0.1389 1.8673 12 6 5.4274 -0.5318 3.1577 13 6 5.9856 -1.8608 3.6704 14 1 5.8308 -2.6351 2.9188 15 6 5.2661 -2.2525 4.9630 16 6 5.8008 -3.5980 5.4589 17 6 7.2941 -3.4719 5.7554 18 7 7.9769 -2.9536 4.5622 19 6 9.0482 -3.6180 4.0275 20 1 9.2659 -3.5315 2.9732 21 6 9.8578 -4.3982 4.8416 22 7 9.7815 -4.2823 6.1505 23 14 11.0555 -5.6124 4.0797 24 1 10.9478 -5.5514 2.5998 25 1 12.4399 -5.2661 4.4904 26 1 10.7304 -6.9853 4.5430 27 6 7.4844 -1.7120 3.9499 28 6 3.9297 -0.6809 2.8803 29 6 3.3673 0.6608 2.4003 30 1 -0.3634 -1.0250 0.0720 31 1 -0.3633 0.5750 0.8518 32 1 -0.3633 0.4502 -0.9238 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.3280 3.4930 -1.9825 36 1 -0.2038 2.6996 -0.4804 37 1 1.0846 3.9267 -0.4308 38 1 5.8669 1.9877 2.0949 39 1 6.0522 1.4459 0.4068 40 1 7.2197 -0.0557 2.0603 41 1 5.9755 -0.8996 1.1064 42 1 5.5818 0.2414 3.9103 43 1 5.4417 -1.4900 5.7217 44 1 4.1961 -2.3350 4.7723 45 1 5.2715 -3.8875 6.3667 46 1 5.6472 -4.3560 4.6909 47 1 7.6984 -4.4512 6.0113 48 1 7.4416 -2.7844 6.5884 49 1 10.3470 -4.8277 6.7195 50 1 7.6478 -0.8782 4.6326 51 1 8.0143 -1.5306 3.0147 52 1 3.7759 -1.4364 2.1099 53 1 3.4187 -0.9835 3.7944 54 1 3.4382 1.3948 3.2029 55 1 2.3247 0.5361 2.1073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961337276.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:02 Heat of formation + Delta-G solvation = -92.873422 kcal Electronic energy + Delta-G solvation = -31332.065689 eV Core-core repulsion = 27368.220710 eV Total energy + Delta-G solvation = -3963.844979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.62738 -40.04620 -38.80154 -37.90724 -35.65175 -34.58705 -33.67044 -32.51963 -31.82379 -30.72314 -29.05607 -27.24707 -26.97214 -25.84751 -24.60133 -23.35487 -23.05384 -22.66895 -21.53286 -20.55971 -20.01757 -18.76948 -18.50111 -17.73300 -16.91297 -16.81956 -16.58876 -16.07203 -15.80749 -15.57957 -15.44399 -15.27678 -14.94163 -14.87575 -14.65163 -14.55505 -14.32473 -14.13958 -13.92658 -13.69355 -13.45172 -13.40883 -13.05631 -12.96724 -12.91137 -12.80532 -12.45345 -12.36202 -12.29672 -12.20150 -12.15791 -11.98500 -11.78380 -11.75062 -11.61021 -11.47512 -11.34042 -11.13034 -10.92598 -10.72018 -10.53361 -10.33272 -9.65636 -8.64347 -7.86279 -5.32628 1.43207 1.44926 1.49976 1.55319 1.80504 2.49587 2.88225 3.27148 3.40891 3.64043 3.76536 3.82352 3.85950 3.86779 3.98057 4.14756 4.24273 4.27226 4.31600 4.37230 4.43226 4.47423 4.50934 4.53328 4.57852 4.58618 4.64740 4.73394 4.80876 4.83555 4.86895 4.92321 4.93244 4.98878 5.03510 5.08430 5.11655 5.15307 5.16627 5.19807 5.24728 5.37592 5.40831 5.43567 5.44544 5.55768 5.60412 5.64431 5.72799 5.85198 6.06829 6.40243 6.40513 7.11882 7.16328 7.89545 8.39064 9.18769 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002400 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.152231 B =11665.620231 C =12165.796396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.079 3.921 4 H 0.119 0.881 5 O -0.391 6.391 6 C 0.020 3.980 7 C 0.497 3.503 8 O -0.581 6.581 9 N -0.604 5.604 10 C 0.115 3.885 11 C -0.125 4.125 12 C -0.069 4.069 13 C -0.084 4.084 14 H 0.050 0.950 15 C -0.096 4.096 16 C -0.134 4.134 17 C 0.172 3.828 18 N -0.613 5.613 19 C -0.257 4.257 20 H 0.061 0.939 21 C -0.054 4.054 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.150 3.850 28 C -0.126 4.126 29 C 0.096 3.904 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.051 0.949 48 H -0.007 1.007 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.044 0.956 52 H 0.060 0.940 53 H 0.103 0.897 54 H 0.093 0.907 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 13.057 -6.298 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.018 3.982 4 H 0.137 0.863 5 O -0.309 6.309 6 C -0.076 4.076 7 C 0.286 3.714 8 O -0.461 6.461 9 N -0.338 5.338 10 C -0.007 4.007 11 C -0.163 4.163 12 C -0.088 4.088 13 C -0.104 4.104 14 H 0.068 0.932 15 C -0.133 4.133 16 C -0.173 4.173 17 C 0.047 3.953 18 N -0.336 5.336 19 C -0.387 4.387 20 H 0.079 0.921 21 C -0.249 4.249 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.025 3.975 28 C -0.164 4.164 29 C -0.025 4.025 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.011 0.989 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.063 0.937 52 H 0.079 0.921 53 H 0.121 0.879 54 H 0.111 0.889 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.841 13.101 -6.894 28.063 hybrid contribution 1.588 -0.793 -0.084 1.777 sum -22.253 12.308 -6.978 26.370 Atomic orbital electron populations 1.21750 0.92720 1.03211 1.02682 1.22036 0.98740 0.93184 1.03552 1.22168 0.89226 0.96767 0.90072 0.86333 1.88006 1.60372 1.52847 1.29650 1.23164 0.90955 0.89706 1.03780 1.21511 0.91682 0.76130 0.82098 1.90672 1.67664 1.50182 1.37539 1.48246 1.07658 1.65236 1.12655 1.21559 0.79661 0.97716 1.01778 1.21921 1.00403 0.96363 0.97589 1.21047 0.95252 0.96426 0.96092 1.21476 0.95002 0.96822 0.97097 0.93174 1.21458 0.99698 0.95913 0.96245 1.21968 0.96775 0.98255 1.00313 1.20562 0.89980 0.97709 0.87062 1.44334 1.33132 1.24462 1.31719 1.19511 1.03651 1.23624 0.91962 0.92128 1.25775 0.99838 1.03499 0.95770 1.70175 1.42394 1.42248 1.03405 0.85242 0.78426 0.78812 0.78212 1.19411 1.21838 1.21535 1.21112 0.93817 0.87227 0.95359 1.22022 0.94811 0.96875 1.02701 1.22263 0.96146 0.96447 0.87655 0.91259 0.90533 0.92753 0.92829 0.88318 0.88670 0.91210 0.93554 0.89718 0.91417 0.91177 0.93231 0.90159 0.92515 0.89554 0.91389 0.93775 0.93094 0.98932 0.94182 0.97119 0.93716 0.92110 0.87902 0.88863 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.09 71.98 0.65 -0.63 16 2 C -0.14 -1.88 5.21 30.60 0.16 -1.72 16 3 C 0.08 1.32 1.82 29.85 0.05 1.37 16 4 H 0.12 1.14 6.96 -2.39 -0.02 1.12 16 5 O -0.39 -8.19 9.48 -130.25 -1.23 -9.42 16 6 C 0.02 0.23 10.43 113.37 1.18 1.41 16 7 C 0.50 12.22 7.04 87.66 0.62 12.84 16 8 O -0.58 -20.51 15.96 15.69 0.25 -20.26 16 9 N -0.60 -11.99 2.97 -818.89 -2.43 -14.43 16 10 C 0.12 2.61 6.44 86.36 0.56 3.16 16 11 C -0.12 -3.05 5.05 30.67 0.15 -2.89 16 12 C -0.07 -1.51 1.74 -10.77 -0.02 -1.53 16 13 C -0.08 -2.54 1.92 -10.72 -0.02 -2.56 16 14 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 15 C -0.10 -2.70 4.86 30.62 0.15 -2.55 16 16 C -0.13 -4.84 6.07 30.53 0.19 -4.66 16 17 C 0.17 8.37 5.27 86.22 0.45 8.82 16 18 N -0.61 -31.14 3.00 -699.90 -2.10 -33.24 16 19 C -0.26 -14.47 9.60 84.03 0.81 -13.67 16 20 H 0.06 3.38 7.87 -2.91 -0.02 3.36 16 21 C -0.05 -3.07 4.99 84.86 0.42 -2.65 16 22 N -0.94 -56.16 11.02 21.65 0.24 -55.93 16 23 Si 0.96 45.93 29.58 68.60 2.03 47.96 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.15 6.08 5.27 86.36 0.46 6.54 16 28 C -0.13 -1.92 5.02 30.68 0.15 -1.76 16 29 C 0.10 1.15 5.57 86.36 0.48 1.63 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.05 0.57 7.45 -2.39 -0.02 0.55 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.05 5.71 -2.39 -0.01 1.04 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.46 7.29 -2.38 -0.02 0.44 16 37 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.86 7.00 -2.39 -0.02 1.84 16 40 H 0.07 1.88 6.49 -2.39 -0.02 1.87 16 41 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.80 6.33 -2.39 -0.02 1.79 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.05 2.84 5.95 -2.39 -0.01 2.83 16 48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 50 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.04 1.84 6.51 -2.39 -0.02 1.83 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.10 1.19 6.33 -2.38 -0.02 1.18 16 54 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 55 H 0.11 0.79 4.25 -2.38 -0.01 0.78 16 Total: -1.00 -76.84 405.45 4.04 -72.79 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.85 Total: 11.38 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.45 Total: 1.15 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.30 Total: -103.59 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.98 Total: -29.69 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.84 4.04 -72.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961337276.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.081 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds