Wall clock time and date at job start Tue Mar 31 2020 23:58:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53002 * 109.47391 * 2 1
4 4 H 1.08999 * 109.46950 * 55.73173 * 3 2 1
5 5 O 1.42903 * 109.46718 * 295.73163 * 3 2 1
6 6 C 1.42907 * 113.99369 * 149.99983 * 5 3 2
7 7 C 1.50693 * 109.47109 * 175.73116 * 3 2 1
8 8 O 1.21284 * 120.00024 * 112.70266 * 7 3 2
9 9 N 1.34774 * 120.00337 * 292.70219 * 7 3 2
10 10 C 1.46928 * 120.62905 * 355.38923 * 9 7 3
11 11 C 1.53187 * 108.78027 * 233.58947 * 10 9 7
12 12 C 1.53045 * 109.30974 * 305.36682 * 11 10 9
13 13 C 1.53004 * 109.45777 * 181.38405 * 12 11 10
14 14 H 1.09000 * 109.49990 * 300.03613 * 13 12 11
15 15 C 1.53040 * 109.52362 * 60.11846 * 13 12 11
16 16 C 1.53039 * 109.53914 * 181.33163 * 15 13 12
17 17 C 1.53200 * 109.31243 * 298.63794 * 16 15 13
18 18 N 1.47196 * 108.85402 * 54.64959 * 17 16 15
19 19 C 1.36945 * 120.81567 * 126.33934 * 18 17 16
20 20 H 1.07990 * 120.00006 * 210.55303 * 19 18 17
21 21 C 1.38808 * 119.99637 * 30.54927 * 19 18 17
22 22 N 1.31618 * 120.00347 * 10.61558 * 21 19 18
23 23 Si 1.86804 * 119.99959 * 190.60910 * 21 19 18
24 24 H 1.48498 * 109.47227 * 90.00251 * 23 21 19
25 25 H 1.48495 * 109.47229 * 210.00459 * 23 21 19
26 26 H 1.48499 * 109.46841 * 330.00628 * 23 21 19
27 27 C 1.46928 * 118.55887 * 306.47800 * 18 17 16
28 28 C 1.53032 * 109.52954 * 61.37232 * 12 11 10
29 29 C 1.46924 * 120.63334 * 175.37309 * 9 7 3
30 30 H 1.09005 * 109.47463 * 59.99803 * 1 2 3
31 31 H 1.09000 * 109.47522 * 179.97438 * 1 2 3
32 32 H 1.09006 * 109.47497 * 300.00324 * 1 2 3
33 33 H 1.09000 * 109.46999 * 240.00168 * 2 1 3
34 34 H 1.08998 * 109.47082 * 120.00364 * 2 1 3
35 35 H 1.09002 * 109.46826 * 180.02562 * 6 5 3
36 36 H 1.08995 * 109.46945 * 299.99300 * 6 5 3
37 37 H 1.08992 * 109.47280 * 60.00117 * 6 5 3
38 38 H 1.09003 * 109.58224 * 113.79770 * 10 9 7
39 39 H 1.08998 * 109.58528 * 353.38364 * 10 9 7
40 40 H 1.08996 * 109.49797 * 185.41709 * 11 10 9
41 41 H 1.08996 * 109.49755 * 65.31675 * 11 10 9
42 42 H 1.08998 * 109.46174 * 301.35597 * 12 11 10
43 43 H 1.09000 * 109.46370 * 301.35422 * 15 13 12
44 44 H 1.08998 * 109.46277 * 61.32697 * 15 13 12
45 45 H 1.08999 * 109.49947 * 58.58612 * 16 15 13
46 46 H 1.09002 * 109.50215 * 178.68288 * 16 15 13
47 47 H 1.09000 * 109.58260 * 174.42230 * 17 16 15
48 48 H 1.08996 * 109.58327 * 294.69740 * 17 16 15
49 49 H 0.96996 * 120.00365 * 179.97438 * 22 21 19
50 50 H 1.09000 * 109.58712 * 293.68639 * 27 18 17
51 51 H 1.08996 * 109.58805 * 173.40165 * 27 18 17
52 52 H 1.09003 * 109.49832 * 58.57776 * 28 12 11
53 53 H 1.09003 * 109.50314 * 178.67457 * 28 12 11
54 54 H 1.08995 * 109.58632 * 246.19824 * 29 9 7
55 55 H 1.09003 * 109.58964 * 6.48413 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6156 1.9779 0.8493
5 8 1.6473 2.0865 -1.2137
6 6 1.4428 3.4949 -1.0844
7 6 3.5432 1.4437 0.1058
8 8 4.2165 1.8254 -0.8280
9 7 4.1395 1.0207 1.2380
10 6 3.3384 0.6508 2.4128
11 6 3.8436 1.4422 3.6232
12 6 5.3471 1.2087 3.7888
13 6 5.8488 1.9701 5.0174
14 1 5.6583 3.0355 4.8881
15 6 5.1172 1.4680 6.2643
16 6 5.5948 2.2523 7.4886
17 6 7.0968 2.0219 7.6836
18 7 7.7969 2.3666 6.4355
19 6 8.8372 3.2571 6.4376
20 1 9.0231 3.8724 5.5699
21 6 9.6527 3.3689 7.5553
22 7 9.5636 2.4847 8.5262
23 14 10.8769 4.7743 7.6815
24 1 10.2308 5.9356 8.3442
25 1 12.0504 4.3383 8.4802
26 1 11.3226 5.1662 6.3203
27 6 7.3536 1.7365 5.1844
28 6 6.0827 1.7088 2.5435
29 6 5.6030 0.9203 1.3208
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3634 0.5139 0.8900
33 1 1.8932 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 1.1467 3.9090 -2.0483
36 1 0.6574 3.6823 -0.3523
37 1 2.3677 3.9676 -0.7542
38 1 3.4429 -0.4171 2.6047
39 1 2.2908 0.8906 2.2308
40 1 3.3225 1.1073 4.5200
41 1 3.6554 2.5044 3.4677
42 1 5.5369 0.1433 3.9193
43 1 4.0440 1.6106 6.1378
44 1 5.3283 0.4083 6.4072
45 1 5.4067 3.3150 7.3360
46 1 5.0565 1.9103 8.3726
47 1 7.4615 2.6546 8.4928
48 1 7.2771 0.9752 7.9286
49 1 10.1337 2.5626 9.3070
50 1 7.5550 0.6659 5.2230
51 1 7.8876 2.1786 4.3434
52 1 5.8731 2.7686 2.3983
53 1 7.1554 1.5638 2.6718
54 1 5.8922 -0.1255 1.4238
55 1 6.0496 1.3356 0.4174
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000961337280.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:58:06
Heat of formation + Delta-G solvation = -96.683005 kcal
Electronic energy + Delta-G solvation = -31290.089653 eV
Core-core repulsion = 27326.079478 eV
Total energy + Delta-G solvation = -3964.010175 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.38 seconds
Orbital eigenvalues (eV)
-41.63796 -40.05965 -38.70463 -37.82719 -35.68304 -34.68797 -33.65866 -32.53479
-31.84299 -30.68124 -28.79260 -27.27061 -27.16315 -25.86372 -24.60305 -23.45709
-23.05797 -22.55441 -21.42017 -20.57845 -20.13667 -18.77752 -18.49739 -17.79162
-17.00719 -16.85339 -16.39326 -16.09095 -15.66867 -15.61534 -15.51459 -15.14492
-14.95140 -14.91593 -14.66640 -14.51414 -14.40866 -14.14489 -13.99684 -13.70938
-13.43867 -13.35785 -13.04293 -12.97075 -12.91588 -12.79131 -12.49303 -12.42105
-12.23827 -12.16469 -12.00410 -11.98561 -11.75800 -11.70932 -11.69075 -11.58514
-11.41026 -11.34278 -10.95803 -10.72910 -10.55102 -10.27066 -9.66084 -8.60869
-7.86426 -5.36759 1.43934 1.44323 1.49381 1.53538 1.88841 2.48689
2.76305 3.27597 3.38817 3.63418 3.75632 3.80842 3.87408 3.91110
3.96499 4.13688 4.23733 4.29467 4.35258 4.37134 4.41621 4.46848
4.48261 4.51339 4.56738 4.58008 4.64099 4.75936 4.79340 4.81360
4.88740 4.91325 4.92550 4.98485 5.02700 5.11076 5.11632 5.14700
5.17204 5.19644 5.24111 5.37133 5.43091 5.43863 5.46467 5.55275
5.59527 5.63317 5.71926 5.84792 5.99564 6.38978 6.41375 7.10631
7.16248 7.88094 8.39666 9.18290
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.020288 B = 0.002412 C = 0.002286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1379.798971 B =11606.044649 C =12244.605336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.117 4.117
3 C 0.076 3.924
4 H 0.112 0.888
5 O -0.380 6.380
6 C 0.025 3.975
7 C 0.483 3.517
8 O -0.583 6.583
9 N -0.604 5.604
10 C 0.100 3.900
11 C -0.126 4.126
12 C -0.069 4.069
13 C -0.084 4.084
14 H 0.049 0.951
15 C -0.096 4.096
16 C -0.134 4.134
17 C 0.173 3.827
18 N -0.613 5.613
19 C -0.260 4.260
20 H 0.060 0.940
21 C -0.051 4.051
22 N -0.936 5.936
23 Si 0.966 3.034
24 H -0.284 1.284
25 H -0.293 1.293
26 H -0.271 1.271
27 C 0.150 3.850
28 C -0.124 4.124
29 C 0.115 3.885
30 H 0.051 0.949
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.059 0.941
34 H 0.104 0.896
35 H 0.099 0.901
36 H 0.069 0.931
37 H 0.026 0.974
38 H 0.095 0.905
39 H 0.109 0.891
40 H 0.102 0.898
41 H 0.058 0.942
42 H 0.080 0.920
43 H 0.086 0.914
44 H 0.056 0.944
45 H 0.043 0.957
46 H 0.067 0.933
47 H 0.049 0.951
48 H -0.006 1.006
49 H 0.249 0.751
50 H 0.010 0.990
51 H 0.044 0.956
52 H 0.048 0.952
53 H 0.069 0.931
54 H 0.084 0.916
55 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.793 -5.841 -13.153 26.956
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.154 4.154
3 C 0.015 3.985
4 H 0.129 0.871
5 O -0.297 6.297
6 C -0.071 4.071
7 C 0.272 3.728
8 O -0.463 6.463
9 N -0.338 5.338
10 C -0.021 4.021
11 C -0.164 4.164
12 C -0.089 4.089
13 C -0.104 4.104
14 H 0.068 0.932
15 C -0.133 4.133
16 C -0.173 4.173
17 C 0.048 3.952
18 N -0.337 5.337
19 C -0.390 4.390
20 H 0.078 0.922
21 C -0.246 4.246
22 N -0.582 5.582
23 Si 0.794 3.206
24 H -0.211 1.211
25 H -0.219 1.219
26 H -0.196 1.196
27 C 0.025 3.975
28 C -0.162 4.162
29 C -0.008 4.008
30 H 0.070 0.930
31 H 0.090 0.910
32 H 0.090 0.910
33 H 0.078 0.922
34 H 0.122 0.878
35 H 0.117 0.883
36 H 0.087 0.913
37 H 0.045 0.955
38 H 0.113 0.887
39 H 0.127 0.873
40 H 0.120 0.880
41 H 0.077 0.923
42 H 0.099 0.901
43 H 0.104 0.896
44 H 0.075 0.925
45 H 0.062 0.938
46 H 0.086 0.914
47 H 0.067 0.933
48 H 0.012 0.988
49 H 0.059 0.941
50 H 0.028 0.972
51 H 0.062 0.938
52 H 0.067 0.933
53 H 0.088 0.912
54 H 0.102 0.898
55 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -22.366 -5.740 -13.696 26.848
hybrid contribution 1.769 1.168 0.546 2.189
sum -20.598 -4.572 -13.150 24.862
Atomic orbital electron populations
1.21703 0.92887 1.02979 1.02656 1.21713 0.98461 0.91280 1.03978
1.22328 0.88517 0.97990 0.89680 0.87091 1.87954 1.87542 1.21984
1.32266 1.22991 0.99750 0.80265 1.04095 1.22078 0.92534 0.76311
0.81874 1.90672 1.67039 1.48742 1.39844 1.48314 1.07294 1.64921
1.13241 1.22209 0.95735 1.00817 0.83330 1.22020 0.94905 1.00658
0.98805 1.21052 0.95384 1.00092 0.92324 1.21479 0.95146 0.98939
0.94841 0.93247 1.21458 0.99808 0.98913 0.93137 1.22040 0.96827
0.99593 0.98845 1.20676 0.89581 0.96015 0.88955 1.44356 1.35906
1.49750 1.03664 1.19462 1.05208 1.13041 1.01332 0.92242 1.25861
0.99736 1.00506 0.98512 1.70137 1.41978 1.36277 1.09822 0.85284
0.78442 0.79100 0.77736 1.21119 1.21907 1.19594 1.21099 0.94010
0.94418 0.87945 1.21911 1.00545 0.99310 0.94429 1.21547 0.79913
1.00961 0.98383 0.92993 0.91030 0.91015 0.92203 0.87771 0.88285
0.91289 0.95548 0.88651 0.87254 0.87961 0.92312 0.90149 0.89603
0.92499 0.93794 0.91401 0.93255 0.98807 0.94139 0.97195 0.93788
0.93282 0.91242 0.89825 0.91463
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 9.80 71.98 0.71 -0.53 16
2 C -0.12 -1.39 5.28 30.59 0.16 -1.23 16
3 C 0.08 1.27 1.68 29.85 0.05 1.32 16
4 H 0.11 1.23 6.73 -2.39 -0.02 1.22 16
5 O -0.38 -8.03 9.40 -130.04 -1.22 -9.25 16
6 C 0.03 0.40 10.81 113.37 1.23 1.63 16
7 C 0.48 11.53 7.02 87.66 0.62 12.15 16
8 O -0.58 -19.88 15.93 15.89 0.25 -19.63 16
9 N -0.60 -11.77 2.97 -818.92 -2.43 -14.20 16
10 C 0.10 1.18 4.94 86.36 0.43 1.60 16
11 C -0.13 -1.91 5.05 30.67 0.15 -1.76 16
12 C -0.07 -1.52 1.74 -10.77 -0.02 -1.54 16
13 C -0.08 -2.54 1.92 -10.71 -0.02 -2.56 16
14 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
15 C -0.10 -2.70 4.86 30.62 0.15 -2.55 16
16 C -0.13 -4.83 6.08 30.67 0.19 -4.64 16
17 C 0.17 8.40 5.28 86.31 0.46 8.86 16
18 N -0.61 -31.13 3.00 -698.40 -2.10 -33.23 16
19 C -0.26 -14.62 9.60 84.03 0.81 -13.81 16
20 H 0.06 3.30 7.85 -2.92 -0.02 3.28 16
21 C -0.05 -2.90 5.06 84.86 0.43 -2.47 16
22 N -0.94 -56.07 10.99 21.65 0.24 -55.83 16
23 Si 0.97 45.74 29.57 68.60 2.03 47.77 16
24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16
25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
27 C 0.15 6.11 5.27 86.36 0.45 6.56 16
28 C -0.12 -3.01 5.05 30.67 0.15 -2.86 16
29 C 0.11 2.57 6.44 86.36 0.56 3.12 16
30 H 0.05 0.59 7.80 -2.38 -0.02 0.57 16
31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
32 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16
33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.10 0.81 6.05 -2.39 -0.01 0.79 16
35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
36 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16
37 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16
38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
39 H 0.11 0.73 5.07 -2.39 -0.01 0.72 16
40 H 0.10 1.20 6.34 -2.39 -0.02 1.18 16
41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
43 H 0.09 1.80 6.34 -2.39 -0.02 1.78 16
44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
47 H 0.05 2.75 6.05 -2.39 -0.01 2.73 16
48 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
49 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16
50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16
51 H 0.04 1.81 6.51 -2.39 -0.02 1.80 16
52 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
53 H 0.07 1.86 6.49 -2.39 -0.02 1.85 16
54 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
55 H 0.07 1.83 7.00 -2.39 -0.02 1.81 16
Total: -1.00 -75.41 407.94 4.10 -71.31
By element:
Atomic # 1 Polarization: 10.92 SS G_CDS: 0.84 Total: 11.77 kcal
Atomic # 6 Polarization: -5.19 SS G_CDS: 6.49 Total: 1.30 kcal
Atomic # 7 Polarization: -98.97 SS G_CDS: -4.29 Total: -103.26 kcal
Atomic # 8 Polarization: -27.92 SS G_CDS: -0.97 Total: -28.89 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal
Total: -75.41 4.10 -71.31 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000961337280.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.375 kcal
(2) G-P(sol) polarization free energy of solvation -75.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.38 seconds