Wall clock time and date at job start Wed Apr 1 2020 00:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.47024 * 2 1 4 4 H 1.08997 * 109.46924 * 181.98128 * 3 2 1 5 5 O 1.42899 * 109.46646 * 61.98299 * 3 2 1 6 6 C 1.42900 * 113.99529 * 149.25244 * 5 3 2 7 7 C 1.53005 * 109.47075 * 270.66656 * 6 5 3 8 8 C 1.53000 * 109.46837 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47106 * 60.00539 * 8 7 6 10 10 C 1.52996 * 109.47247 * 299.99403 * 9 8 7 11 11 C 1.53002 * 109.46918 * 150.67262 * 6 5 3 12 12 C 1.50701 * 109.47114 * 301.98435 * 3 2 1 13 13 O 1.21275 * 119.99952 * 112.54153 * 12 3 2 14 14 N 1.34778 * 120.00011 * 292.53607 * 12 3 2 15 15 C 1.47425 * 125.64614 * 354.67765 * 14 12 3 16 16 C 1.54915 * 104.83307 * 155.91572 * 15 14 12 17 17 C 1.55153 * 101.57988 * 37.00398 * 16 15 14 18 18 H 1.09003 * 110.86991 * 82.93659 * 17 16 15 19 19 N 1.46495 * 110.72041 * 206.13440 * 17 16 15 20 20 C 1.46503 * 120.00009 * 53.52986 * 19 17 16 21 21 C 1.36933 * 120.00236 * 233.52300 * 19 17 16 22 22 H 1.08002 * 120.00343 * 24.40925 * 21 19 17 23 23 C 1.38814 * 120.00541 * 204.40280 * 21 19 17 24 24 N 1.31622 * 119.99724 * 15.10791 * 23 21 19 25 25 Si 1.86797 * 120.00511 * 195.10521 * 23 21 19 26 26 H 1.48503 * 109.46904 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47211 * 120.00158 * 25 23 21 28 28 H 1.48502 * 109.47360 * 240.00203 * 25 23 21 29 29 C 1.47017 * 125.65054 * 174.72238 * 14 12 3 30 30 H 1.09009 * 109.47053 * 305.46671 * 1 2 3 31 31 H 1.08999 * 109.47538 * 65.46697 * 1 2 3 32 32 H 1.08998 * 109.47068 * 185.47294 * 1 2 3 33 33 H 1.09005 * 109.46770 * 240.00608 * 2 1 3 34 34 H 1.08997 * 109.47662 * 119.99957 * 2 1 3 35 35 H 1.08997 * 109.47618 * 30.66974 * 6 5 3 36 36 H 1.08997 * 109.47157 * 300.00601 * 7 6 5 37 37 H 1.08997 * 109.46758 * 60.00195 * 7 6 5 38 38 H 1.08999 * 109.47141 * 299.99765 * 8 7 6 39 39 H 1.09001 * 109.46514 * 180.02562 * 8 7 6 40 40 H 1.09005 * 109.47128 * 179.97438 * 9 8 7 41 41 H 1.08999 * 109.47752 * 59.99601 * 9 8 7 42 42 H 1.09002 * 109.47451 * 300.00213 * 10 9 8 43 43 H 1.08999 * 109.47683 * 180.02562 * 10 9 8 44 44 H 1.09001 * 109.47291 * 299.99526 * 11 6 5 45 45 H 1.08999 * 109.47698 * 59.99647 * 11 6 5 46 46 H 1.08998 * 110.37201 * 37.07593 * 15 14 12 47 47 H 1.08997 * 110.45766 * 274.79854 * 15 14 12 48 48 H 1.09005 * 110.99947 * 278.93408 * 16 15 14 49 49 H 1.09002 * 111.03879 * 155.09685 * 16 15 14 50 50 H 1.08998 * 109.47233 * 93.70163 * 20 19 17 51 51 H 1.09007 * 109.46859 * 213.70316 * 20 19 17 52 52 H 1.09005 * 109.46597 * 333.69569 * 20 19 17 53 53 H 0.97000 * 120.00380 * 180.02562 * 24 23 21 54 54 H 1.09005 * 109.88068 * 61.60320 * 29 14 12 55 55 H 1.09000 * 109.88560 * 300.43869 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 -0.0355 5 8 1.6020 2.1025 1.1894 6 6 2.4976 3.1133 1.6565 7 6 3.5188 2.4890 2.6097 8 6 4.4773 3.5714 3.1103 9 6 3.6852 4.6523 3.8484 10 6 2.6641 5.2767 2.8954 11 6 1.7059 4.1947 2.3945 12 6 1.4978 2.1671 -1.2051 13 8 0.6975 3.0670 -1.0624 14 7 1.9025 1.8149 -2.4416 15 6 2.9461 0.8215 -2.7536 16 6 2.6146 0.3348 -4.1865 17 6 2.1172 1.6445 -4.8530 18 1 2.9567 2.2453 -5.2029 19 7 1.1989 1.3487 -5.9555 20 6 0.0318 0.4931 -5.7272 21 6 1.4314 1.8721 -7.1993 22 1 2.4332 2.1538 -7.4881 23 6 0.3794 2.0403 -8.0893 24 7 -0.8628 1.9850 -7.6578 25 14 0.7268 2.3454 -9.8992 26 1 2.1943 2.3617 -10.1256 27 1 0.1132 1.2633 -10.7102 28 1 0.1489 3.6532 -10.3005 29 6 1.3770 2.3585 -3.7024 30 1 -0.3633 0.5963 0.8371 31 1 -0.3634 0.4267 -0.9349 32 1 -0.3633 -1.0230 0.0980 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.0173 3.5587 0.8082 36 1 2.9991 2.0437 3.4580 37 1 4.0828 1.7186 2.0839 38 1 4.9970 4.0170 2.2621 39 1 5.2050 3.1265 3.7890 40 1 4.3681 5.4233 4.2055 41 1 3.1655 4.2067 4.6966 42 1 3.1837 5.7224 2.0472 43 1 2.1000 6.0471 3.4211 44 1 0.9784 4.6396 1.7156 45 1 1.1862 3.7495 3.2429 46 1 2.9007 -0.0102 -2.0505 47 1 3.9325 1.2846 -2.7290 48 1 1.8273 -0.4190 -4.1706 49 1 3.5057 -0.0444 -4.6869 50 1 -0.8328 1.1134 -5.4912 51 1 -0.1730 -0.0892 -6.6256 52 1 0.2332 -0.1815 -4.8950 53 1 -1.5980 2.1022 -8.2797 54 1 1.5644 3.4312 -3.7503 55 1 0.3068 2.1635 -3.7727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971537966.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:21 Heat of formation + Delta-G solvation = -91.340076 kcal Electronic energy + Delta-G solvation = -31443.512369 eV Core-core repulsion = 27479.733880 eV Total energy + Delta-G solvation = -3963.778488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.54405 -40.06641 -38.88784 -37.42561 -36.57610 -34.61921 -33.35535 -31.72115 -31.26817 -30.50891 -29.77063 -28.11499 -27.74843 -25.28810 -24.13041 -23.54530 -23.26514 -22.77013 -20.91448 -20.76227 -20.32639 -18.96203 -18.20148 -17.95066 -17.55112 -16.95709 -16.34181 -16.24605 -15.98698 -15.48999 -15.21006 -15.09096 -15.05710 -14.94360 -14.57078 -14.35504 -14.32243 -13.92619 -13.84440 -13.72711 -13.52282 -13.32202 -13.18209 -13.13164 -12.80568 -12.65980 -12.53582 -12.41687 -12.34493 -12.18569 -12.09644 -12.06749 -12.03843 -11.83334 -11.80018 -11.73902 -11.44298 -11.34376 -11.27253 -10.91659 -10.65895 -10.22598 -9.65367 -8.81992 -7.86122 -5.37134 1.45953 1.47217 1.54727 1.58058 1.86597 2.49284 2.60818 3.26064 3.43228 3.57046 3.70439 3.75730 3.79768 3.82969 3.93726 3.99698 4.07207 4.20396 4.25090 4.27369 4.28451 4.33831 4.38021 4.46352 4.48536 4.54901 4.56475 4.59831 4.68836 4.76380 4.82331 4.88958 4.90812 4.99957 5.02791 5.06026 5.12192 5.13629 5.16689 5.19747 5.22089 5.23316 5.29908 5.30938 5.37965 5.38280 5.43159 5.49797 5.63619 5.65880 6.13059 6.30041 6.57228 7.09774 7.14366 7.81456 8.27085 9.17073 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.002479 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.273514 B =11290.277395 C =11679.909455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.114 0.886 5 O -0.365 6.365 6 C 0.086 3.914 7 C -0.132 4.132 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.495 3.505 13 O -0.585 6.585 14 N -0.611 5.611 15 C 0.095 3.905 16 C -0.138 4.138 17 C 0.166 3.834 18 H 0.082 0.918 19 N -0.600 5.600 20 C 0.177 3.823 21 C -0.265 4.265 22 H 0.079 0.921 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.971 3.029 26 H -0.260 1.260 27 H -0.291 1.291 28 H -0.297 1.297 29 C 0.099 3.901 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.104 0.896 50 H -0.009 1.009 51 H 0.019 0.981 52 H 0.037 0.963 53 H 0.248 0.752 54 H 0.035 0.965 55 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.921 -4.369 23.483 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.025 3.975 4 H 0.131 0.869 5 O -0.283 6.283 6 C 0.028 3.972 7 C -0.170 4.170 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.152 4.152 11 C -0.153 4.153 12 C 0.285 3.715 13 O -0.465 6.465 14 N -0.346 5.346 15 C -0.026 4.026 16 C -0.178 4.178 17 C 0.057 3.943 18 H 0.100 0.900 19 N -0.321 5.321 20 C 0.032 3.968 21 C -0.396 4.396 22 H 0.096 0.904 23 C -0.250 4.250 24 N -0.585 5.585 25 Si 0.799 3.201 26 H -0.184 1.184 27 H -0.218 1.218 28 H -0.224 1.224 29 C -0.027 4.027 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.128 0.872 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.123 0.877 50 H 0.010 0.990 51 H 0.037 0.963 52 H 0.055 0.945 53 H 0.057 0.943 54 H 0.053 0.947 55 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 14.163 -3.907 23.641 27.835 hybrid contribution -0.975 0.974 -1.704 2.191 sum 13.188 -2.933 21.937 25.764 Atomic orbital electron populations 1.21665 0.96409 1.02264 1.00260 1.21783 0.96243 0.91293 1.05564 1.22184 1.00034 0.93279 0.82050 0.86880 1.88003 1.48587 1.52348 1.39336 1.22313 0.90642 0.88336 0.95877 1.22017 0.96732 0.98811 0.99456 1.21516 0.97573 0.95833 1.00451 1.21570 0.97648 0.98454 0.97944 1.21499 0.97182 0.97043 0.99508 1.21540 0.98239 0.95775 0.99710 1.21941 0.81509 0.83412 0.84655 1.90671 1.36736 1.32889 1.86194 1.48671 1.39404 1.42094 1.04414 1.22795 0.90928 0.91732 0.97154 1.23210 1.02558 0.97577 0.94416 1.21585 0.91899 0.95141 0.85672 0.90013 1.44118 1.27508 1.54444 1.05993 1.20459 0.88235 0.91509 0.96551 1.19639 0.93119 1.36611 0.90187 0.90362 1.25906 0.95151 1.00744 1.03160 1.70271 0.98543 1.55370 1.34314 0.85150 0.78247 0.76534 0.80165 1.18398 1.21781 1.22437 1.22471 0.98031 0.97294 0.84894 0.93182 0.96284 0.90391 0.88096 0.87094 0.93808 0.90819 0.90540 0.92080 0.89833 0.90581 0.91347 0.92512 0.90839 0.94133 0.91051 0.87211 0.88645 0.91127 0.87747 0.99021 0.96253 0.94485 0.94323 0.94691 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.46 71.98 0.68 -2.96 16 2 C -0.11 -2.03 5.75 30.60 0.18 -1.86 16 3 C 0.09 1.98 1.95 29.85 0.06 2.04 16 4 H 0.11 1.85 7.44 -2.39 -0.02 1.83 16 5 O -0.37 -9.53 8.50 -130.05 -1.10 -10.63 16 6 C 0.09 1.87 2.40 30.60 0.07 1.94 16 7 C -0.13 -1.91 5.51 30.60 0.17 -1.75 16 8 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 9 C -0.12 -1.46 5.92 30.59 0.18 -1.27 16 10 C -0.11 -1.92 5.92 30.58 0.18 -1.74 16 11 C -0.11 -2.56 5.57 30.58 0.17 -2.39 16 12 C 0.50 16.60 5.90 87.66 0.52 17.12 16 13 O -0.59 -26.07 16.85 15.92 0.27 -25.80 16 14 N -0.61 -19.36 3.33 -811.80 -2.70 -22.06 16 15 C 0.10 2.01 6.54 86.86 0.57 2.58 16 16 C -0.14 -3.74 6.59 31.99 0.21 -3.53 16 17 C 0.17 6.36 3.45 46.18 0.16 6.52 16 18 H 0.08 3.06 7.93 -2.39 -0.02 3.04 16 19 N -0.60 -29.35 2.92 -696.15 -2.03 -31.38 16 20 C 0.18 8.81 7.86 127.77 1.00 9.81 16 21 C -0.27 -14.27 9.58 84.03 0.80 -13.47 16 22 H 0.08 4.00 7.86 -2.91 -0.02 3.97 16 23 C -0.05 -3.04 5.04 84.86 0.43 -2.61 16 24 N -0.94 -56.78 10.93 21.65 0.24 -56.54 16 25 Si 0.97 44.91 29.58 68.60 2.03 46.94 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 C 0.10 4.05 6.51 86.73 0.56 4.61 16 30 H 0.05 1.36 7.58 -2.38 -0.02 1.35 16 31 H 0.02 0.58 7.37 -2.39 -0.02 0.56 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.50 5.43 -2.38 -0.01 1.48 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.06 7.81 -2.39 -0.02 1.04 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.90 7.92 -2.39 -0.02 0.88 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.11 1.58 5.07 -2.39 -0.01 1.57 16 47 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.07 2.06 6.04 -2.38 -0.01 2.04 16 49 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 50 H -0.01 -0.49 7.28 -2.39 -0.02 -0.51 16 51 H 0.02 1.01 7.40 -2.38 -0.02 0.99 16 52 H 0.04 1.55 6.01 -2.38 -0.01 1.54 16 53 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 54 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 55 H 0.03 1.46 7.10 -2.39 -0.02 1.45 16 Total: -1.00 -75.71 413.86 3.66 -72.05 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.84 Total: 15.56 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.13 Total: 11.87 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.50 Total: -109.98 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.84 Total: -36.43 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -75.71 3.66 -72.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971537966.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.293 kcal (2) G-P(sol) polarization free energy of solvation -75.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds