Wall clock time and date at job start Tue Mar 31 2020 22:09:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46925 * 2 1
4 4 H 1.08996 * 109.47993 * 305.01951 * 3 2 1
5 5 C 1.53095 * 109.47760 * 184.99838 * 3 2 1
6 6 C 1.53174 * 109.16451 * 182.40978 * 5 3 2
7 7 H 1.09008 * 109.54045 * 297.02640 * 6 5 3
8 8 C 1.52994 * 109.54648 * 176.84913 * 6 5 3
9 9 C 1.50699 * 109.47309 * 174.99932 * 8 6 5
10 10 O 1.21279 * 119.99911 * 359.97438 * 9 8 6
11 11 N 1.34778 * 120.00128 * 180.02562 * 9 8 6
12 12 C 1.46922 * 120.63109 * 180.02562 * 11 9 8
13 13 C 1.53196 * 108.77321 * 233.62650 * 12 11 9
14 14 C 1.53038 * 109.31150 * 305.36040 * 13 12 11
15 15 N 1.46501 * 109.45655 * 181.38402 * 14 13 12
16 16 C 1.46493 * 120.00380 * 300.00249 * 15 14 13
17 17 C 1.36939 * 119.99625 * 120.00697 * 15 14 13
18 18 H 1.07998 * 120.00133 * 339.42907 * 17 15 14
19 19 C 1.38813 * 120.00029 * 159.43245 * 17 15 14
20 20 N 1.31617 * 119.99775 * 347.89338 * 19 17 15
21 21 Si 1.86802 * 120.00093 * 167.88864 * 19 17 15
22 22 H 1.48496 * 109.47225 * 270.00046 * 21 19 17
23 23 H 1.48495 * 109.46899 * 30.00289 * 21 19 17
24 24 H 1.48506 * 109.46813 * 150.00108 * 21 19 17
25 25 C 1.53046 * 109.53457 * 61.37047 * 14 13 12
26 26 C 1.46926 * 120.62897 * 0.02562 * 11 9 8
27 27 C 1.53173 * 109.03745 * 56.97843 * 6 5 3
28 28 C 1.53092 * 109.16583 * 303.01954 * 27 6 5
29 29 O 1.42898 * 109.48225 * 65.05720 * 3 2 1
30 30 H 1.08997 * 109.47597 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47671 * 299.99938 * 1 2 3
32 32 H 1.08999 * 109.47406 * 59.99654 * 1 2 3
33 33 H 1.08996 * 109.47019 * 239.99727 * 2 1 3
34 34 H 1.09000 * 109.46867 * 119.99805 * 2 1 3
35 35 H 1.08996 * 109.52329 * 62.50085 * 5 3 2
36 36 H 1.09001 * 109.52347 * 302.31735 * 5 3 2
37 37 H 1.09004 * 109.47098 * 54.99588 * 8 6 5
38 38 H 1.09001 * 109.47037 * 294.99659 * 8 6 5
39 39 H 1.09007 * 109.58755 * 113.84245 * 12 11 9
40 40 H 1.08999 * 109.59143 * 353.41365 * 12 11 9
41 41 H 1.09003 * 109.49670 * 185.41289 * 13 12 11
42 42 H 1.08995 * 109.52576 * 65.33443 * 13 12 11
43 43 H 1.08994 * 109.46507 * 301.36173 * 14 13 12
44 44 H 1.09000 * 109.47591 * 264.88376 * 16 15 14
45 45 H 1.09002 * 109.47462 * 24.88665 * 16 15 14
46 46 H 1.09000 * 109.47327 * 144.88418 * 16 15 14
47 47 H 0.97008 * 120.00289 * 180.02562 * 20 19 17
48 48 H 1.09005 * 109.49615 * 58.58232 * 25 14 13
49 49 H 1.09003 * 109.49483 * 178.67884 * 25 14 13
50 50 H 1.09000 * 109.59025 * 246.16018 * 26 11 9
51 51 H 1.08997 * 109.58853 * 6.58510 * 26 11 9
52 52 H 1.09001 * 109.52440 * 62.92804 * 27 6 5
53 53 H 1.09001 * 109.52622 * 183.11491 * 27 6 5
54 54 H 1.08992 * 109.48439 * 297.62995 * 28 27 6
55 55 H 1.09003 * 109.48485 * 177.58596 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6051 1.9817 -0.8415
5 6 3.5657 1.4445 -0.1258
6 6 4.0734 2.8884 -0.0645
7 1 3.6804 3.4494 -0.9125
8 6 5.6026 2.8957 -0.1104
9 6 6.0965 4.3181 -0.1739
10 8 5.3034 5.2356 -0.1821
11 7 7.4195 4.5705 -0.2226
12 6 7.9163 5.9518 -0.2843
13 6 8.8567 6.0844 -1.4864
14 6 9.9565 5.0248 -1.3879
15 7 10.8766 5.1699 -2.5186
16 6 10.3787 5.0371 -3.8899
17 6 12.2022 5.4296 -2.2936
18 1 12.5175 5.8504 -1.3502
19 6 13.1407 5.1522 -3.2780
20 7 12.8029 4.4277 -4.3237
21 14 14.8829 5.8070 -3.1188
22 1 14.9702 7.1430 -3.7611
23 1 15.2380 5.9245 -1.6817
24 1 15.8254 4.8739 -3.7870
25 6 9.3274 3.6299 -1.4183
26 6 8.3924 3.4695 -0.2151
27 6 3.5969 3.5305 1.2420
28 6 2.0699 3.4480 1.3150
29 8 1.6631 2.0812 1.2215
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3634 0.5139 -0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 3.8534 0.9974 -1.0772
36 1 3.9995 0.8708 0.6933
37 1 5.9422 2.3534 -0.9929
38 1 5.9953 2.4144 0.7853
39 1 8.4589 6.1862 0.6317
40 1 7.0768 6.6373 -0.3997
41 1 9.3070 7.0770 -1.4882
42 1 8.2928 5.9390 -2.4077
43 1 10.5043 5.1556 -0.4547
44 1 10.5320 4.0146 -4.2348
45 1 9.3149 5.2734 -3.9148
46 1 10.9188 5.7248 -4.5408
47 1 13.4588 4.2335 -5.0116
48 1 8.7587 3.5073 -2.3401
49 1 10.1129 2.8755 -1.3718
50 1 8.9737 3.5018 0.7064
51 1 7.8670 2.5171 -0.2849
52 1 4.0313 2.9990 2.0887
53 1 3.9068 4.5752 1.2688
54 1 1.6355 4.0136 0.4908
55 1 1.7281 3.8649 2.2623
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000985740733.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:09:00
Heat of formation + Delta-G solvation = -97.145325 kcal
Electronic energy + Delta-G solvation = -30678.219902 eV
Core-core repulsion = 26714.189679 eV
Total energy + Delta-G solvation = -3964.030223 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-41.46025 -40.34543 -38.94599 -36.72326 -35.63261 -34.84085 -33.95122 -32.26015
-31.50155 -30.71764 -29.66920 -28.04920 -26.44379 -25.23573 -24.47507 -24.01242
-23.56085 -22.03435 -21.29301 -20.77905 -19.62322 -18.75968 -18.13094 -17.36107
-16.98612 -16.94854 -16.76362 -16.56301 -15.74655 -15.55426 -15.44228 -15.18006
-15.04657 -14.87130 -14.59553 -14.51409 -14.14048 -14.09439 -13.79736 -13.77584
-13.47841 -13.14983 -13.07560 -12.78644 -12.76239 -12.65205 -12.62041 -12.42752
-12.35242 -12.17001 -12.05210 -12.03432 -11.95584 -11.81097 -11.71172 -11.60588
-11.41562 -11.23832 -11.11917 -10.68971 -10.60783 -10.29167 -9.61065 -8.78594
-7.80533 -5.26778 1.46646 1.48318 1.56313 1.67084 2.06236 2.51275
2.89228 3.32552 3.46726 3.62702 3.68202 3.79802 3.88648 4.00645
4.04370 4.14194 4.20571 4.24967 4.27756 4.34258 4.39962 4.42258
4.45780 4.53267 4.56903 4.59241 4.69145 4.70370 4.77874 4.81103
4.83785 4.87360 4.91346 4.93718 4.98346 5.01951 5.05766 5.11777
5.14378 5.19363 5.24483 5.26676 5.31233 5.40986 5.45552 5.48292
5.50288 5.61184 5.68061 5.73580 6.33698 6.35956 6.48807 7.16816
7.22088 7.90158 8.33710 9.22585
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.026557 B = 0.002042 C = 0.001961
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.093450 B =13706.099536 C =14276.413983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.114 4.114
3 C 0.085 3.915
4 H 0.051 0.949
5 C -0.139 4.139
6 C -0.071 4.071
7 H 0.059 0.941
8 C -0.129 4.129
9 C 0.510 3.490
10 O -0.580 6.580
11 N -0.610 5.610
12 C 0.123 3.877
13 C -0.133 4.133
14 C 0.173 3.827
15 N -0.613 5.613
16 C 0.185 3.815
17 C -0.257 4.257
18 H 0.073 0.927
19 C -0.057 4.057
20 N -0.941 5.941
21 Si 0.967 3.033
22 H -0.291 1.291
23 H -0.267 1.267
24 H -0.297 1.297
25 C -0.136 4.136
26 C 0.117 3.883
27 C -0.149 4.149
28 C 0.064 3.936
29 O -0.393 6.393
30 H 0.064 0.936
31 H 0.048 0.952
32 H 0.052 0.948
33 H 0.091 0.909
34 H 0.069 0.931
35 H 0.088 0.912
36 H 0.080 0.920
37 H 0.111 0.889
38 H 0.116 0.884
39 H 0.079 0.921
40 H 0.079 0.921
41 H 0.063 0.937
42 H 0.045 0.955
43 H 0.062 0.938
44 H 0.003 0.997
45 H 0.020 0.980
46 H 0.012 0.988
47 H 0.246 0.754
48 H 0.047 0.953
49 H 0.063 0.937
50 H 0.085 0.915
51 H 0.112 0.888
52 H 0.070 0.930
53 H 0.072 0.928
54 H 0.043 0.957
55 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.046 -8.514 11.690 25.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.152 4.152
3 C 0.027 3.973
4 H 0.069 0.931
5 C -0.177 4.177
6 C -0.090 4.090
7 H 0.077 0.923
8 C -0.169 4.169
9 C 0.301 3.699
10 O -0.461 6.461
11 N -0.342 5.342
12 C -0.001 4.001
13 C -0.173 4.173
14 C 0.066 3.934
15 N -0.335 5.335
16 C 0.040 3.960
17 C -0.387 4.387
18 H 0.091 0.909
19 C -0.252 4.252
20 N -0.588 5.588
21 Si 0.796 3.204
22 H -0.218 1.218
23 H -0.191 1.191
24 H -0.223 1.223
25 C -0.176 4.176
26 C -0.006 4.006
27 C -0.187 4.187
28 C -0.013 4.013
29 O -0.313 6.313
30 H 0.083 0.917
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.109 0.891
34 H 0.088 0.912
35 H 0.107 0.893
36 H 0.099 0.901
37 H 0.129 0.871
38 H 0.134 0.866
39 H 0.097 0.903
40 H 0.097 0.903
41 H 0.082 0.918
42 H 0.064 0.936
43 H 0.081 0.919
44 H 0.021 0.979
45 H 0.038 0.962
46 H 0.030 0.970
47 H 0.055 0.945
48 H 0.066 0.934
49 H 0.081 0.919
50 H 0.103 0.897
51 H 0.130 0.870
52 H 0.088 0.912
53 H 0.090 0.910
54 H 0.062 0.938
55 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -21.440 -8.175 11.703 25.758
hybrid contribution 1.532 0.835 -0.858 1.944
sum -19.907 -7.340 10.845 23.829
Atomic orbital electron populations
1.21708 0.95408 1.01954 1.01611 1.21572 0.96613 0.93546 1.03427
1.22262 0.93932 0.94541 0.86516 0.93080 1.22259 0.95728 0.95692
1.04015 1.20900 0.93409 0.96512 0.98143 0.92264 1.21803 0.96635
0.92300 1.06136 1.21244 0.81296 0.92667 0.74722 1.90620 1.54992
1.48336 1.52133 1.48295 1.05996 1.07742 1.72191 1.21471 0.97301
0.83277 0.98027 1.22271 0.97040 1.00196 0.97763 1.20518 0.89574
0.92928 0.90380 1.44202 1.04817 1.83202 1.01290 1.20393 0.92542
0.97771 0.85263 1.19596 0.83843 1.33858 1.01377 0.90890 1.25730
1.01520 0.99667 0.98259 1.70245 1.34499 1.41507 1.12557 0.85259
0.80167 0.77087 0.77898 1.21784 1.19137 1.22343 1.22312 0.98441
0.98729 0.98121 1.21893 0.90393 0.89933 0.98343 1.22263 0.96559
1.02225 0.97631 1.22558 0.93947 0.82611 1.02172 1.87885 1.78987
1.25119 1.39294 0.91743 0.93314 0.92933 0.89079 0.91179 0.89346
0.90132 0.87130 0.86575 0.90260 0.90286 0.91788 0.93577 0.91935
0.97869 0.96176 0.96965 0.94473 0.93407 0.91873 0.89674 0.87034
0.91164 0.90987 0.93831 0.88209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.89 9.81 71.98 0.71 -1.18 16
2 C -0.11 -1.42 5.64 30.59 0.17 -1.25 16
3 C 0.08 1.33 2.64 30.63 0.08 1.41 16
4 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
5 C -0.14 -1.92 4.70 30.68 0.14 -1.78 16
6 C -0.07 -1.26 1.91 -10.68 -0.02 -1.28 16
7 H 0.06 1.30 7.95 -2.38 -0.02 1.28 16
8 C -0.13 -2.17 3.53 29.85 0.11 -2.06 16
9 C 0.51 12.68 7.44 87.66 0.65 13.33 16
10 O -0.58 -18.31 13.42 -3.03 -0.04 -18.35 16
11 N -0.61 -15.11 2.97 -818.85 -2.43 -17.55 16
12 C 0.12 3.35 6.43 86.36 0.56 3.91 16
13 C -0.13 -4.39 5.32 30.67 0.16 -4.23 16
14 C 0.17 6.43 2.55 45.02 0.11 6.55 16
15 N -0.61 -29.69 2.82 -702.64 -1.98 -31.67 16
16 C 0.19 9.20 8.02 127.77 1.02 10.23 16
17 C -0.26 -13.72 9.63 84.03 0.81 -12.91 16
18 H 0.07 3.76 7.80 -2.91 -0.02 3.74 16
19 C -0.06 -3.17 5.13 84.86 0.44 -2.73 16
20 N -0.94 -55.25 10.52 21.65 0.23 -55.02 16
21 Si 0.97 44.67 29.57 68.60 2.03 46.70 16
22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16
23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16
25 C -0.14 -4.24 5.34 30.68 0.16 -4.08 16
26 C 0.12 2.52 6.34 86.37 0.55 3.07 16
27 C -0.15 -2.86 5.13 30.68 0.16 -2.70 16
28 C 0.06 1.17 6.84 72.01 0.49 1.66 16
29 O -0.39 -7.65 9.94 -148.98 -1.48 -9.14 16
30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16
32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
36 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16
37 H 0.11 1.56 7.69 -2.38 -0.02 1.54 16
38 H 0.12 1.45 7.94 -2.39 -0.02 1.43 16
39 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16
40 H 0.08 2.31 7.00 -2.39 -0.02 2.29 16
41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
42 H 0.05 1.65 6.72 -2.39 -0.02 1.63 16
43 H 0.06 2.32 7.85 -2.39 -0.02 2.30 16
44 H 0.00 0.16 7.41 -2.39 -0.02 0.15 16
45 H 0.02 0.87 6.46 -2.39 -0.02 0.86 16
46 H 0.01 0.64 7.15 -2.39 -0.02 0.63 16
47 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16
48 H 0.05 1.60 7.72 -2.38 -0.02 1.59 16
49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
50 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16
51 H 0.11 1.71 5.93 -2.39 -0.01 1.70 16
52 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
53 H 0.07 1.71 6.07 -2.39 -0.01 1.70 16
54 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16
55 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
Total: -1.00 -67.14 410.79 3.46 -63.68
By element:
Atomic # 1 Polarization: 14.54 SS G_CDS: 0.83 Total: 15.37 kcal
Atomic # 6 Polarization: -0.34 SS G_CDS: 6.30 Total: 5.96 kcal
Atomic # 7 Polarization: -100.05 SS G_CDS: -4.18 Total: -104.24 kcal
Atomic # 8 Polarization: -25.96 SS G_CDS: -1.52 Total: -27.48 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -67.14 3.46 -63.68 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985740733.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.461 kcal
(2) G-P(sol) polarization free energy of solvation -67.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds